Dpy30 (dpy-30 histone methyltransferase complex regulatory subunit) - Rat Genome Database

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Gene: Dpy30 (dpy-30 histone methyltransferase complex regulatory subunit) Rattus norvegicus
Analyze
Symbol: Dpy30
Name: dpy-30 histone methyltransferase complex regulatory subunit
RGD ID: 708575
Description: Predicted to enable protein homodimerization activity. Predicted to be involved in endosomal transport and transcription initiation-coupled chromatin remodeling. Predicted to be located in nucleoplasm and trans-Golgi network. Predicted to be part of MLL1 complex; MLL3/4 complex; and Set1C/COMPASS complex. Orthologous to human DPY30 (dpy-30 histone methyltransferase complex regulatory subunit); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Aip1; dpy-30 homolog; dpy-30 homolog (C. elegans); dpy-30-like protein; dpy-30L; protein rAIP1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8626,872,812 - 26,893,580 (+)NCBIGRCr8
mRatBN7.2621,120,947 - 21,141,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl621,120,947 - 21,141,432 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx621,451,510 - 21,472,232 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0621,767,352 - 21,788,073 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0621,247,803 - 21,268,525 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0622,296,128 - 22,316,894 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl622,296,128 - 22,316,894 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0632,183,006 - 32,203,027 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4621,084,031 - 21,104,731 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1621,086,983 - 21,107,684 (+)NCBI
Celera620,678,371 - 20,699,049 (+)NCBICelera
Cytogenetic Map6q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis. Shilatifard A Annu Rev Biochem. 2012;81:65-95. doi: 10.1146/annurev-biochem-051710-134100.
6. A role of histone H3 lysine 4 methyltransferase components in endosomal trafficking. Xu Z, etal., J Cell Biol. 2009 Aug 10;186(3):343-53. doi: 10.1083/jcb.200902146. Epub 2009 Aug 3.
Additional References at PubMed
PMID:12477932   PMID:16189514   PMID:17500065   PMID:18838538   PMID:19556245   PMID:25416956  


Genomics

Comparative Map Data
Dpy30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8626,872,812 - 26,893,580 (+)NCBIGRCr8
mRatBN7.2621,120,947 - 21,141,720 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl621,120,947 - 21,141,432 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx621,451,510 - 21,472,232 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0621,767,352 - 21,788,073 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0621,247,803 - 21,268,525 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0622,296,128 - 22,316,894 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl622,296,128 - 22,316,894 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0632,183,006 - 32,203,027 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4621,084,031 - 21,104,731 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1621,086,983 - 21,107,684 (+)NCBI
Celera620,678,371 - 20,699,049 (+)NCBICelera
Cytogenetic Map6q13NCBI
DPY30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38232,011,649 - 32,039,835 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl231,867,809 - 32,039,805 (-)EnsemblGRCh38hg38GRCh38
GRCh37232,236,718 - 32,264,904 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36232,102,476 - 32,118,348 (-)NCBINCBI36Build 36hg18NCBI36
Celera232,093,842 - 32,109,716 (-)NCBICelera
Cytogenetic Map2p22.3NCBI
HuRef231,993,445 - 32,003,627 (-)NCBIHuRef
CHM1_1232,179,142 - 32,195,020 (-)NCBICHM1_1
T2T-CHM13v2.0232,060,057 - 32,088,234 (-)NCBIT2T-CHM13v2.0
Dpy30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391774,606,469 - 74,630,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1774,606,469 - 74,630,939 (-)EnsemblGRCm39 Ensembl
GRCm381774,299,474 - 74,323,944 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1774,299,474 - 74,323,944 (-)EnsemblGRCm38mm10GRCm38
MGSCv371774,698,814 - 74,723,284 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361774,204,464 - 74,228,926 (-)NCBIMGSCv36mm8
MGSCv361773,487,231 - 73,504,044 (-)NCBIMGSCv36mm8
Celera1778,594,600 - 78,618,725 (-)NCBICelera
Cytogenetic Map17E2NCBI
cM Map1745.64NCBI
Dpy30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955441437,564 - 450,906 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955441440,047 - 450,906 (-)NCBIChiLan1.0ChiLan1.0
DPY30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21294,449,923 - 94,478,056 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A94,454,658 - 94,470,062 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A32,044,604 - 32,060,204 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A32,099,483 - 32,125,277 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A32,111,566 - 32,125,242 (-)Ensemblpanpan1.1panPan2
DPY30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11725,368,121 - 25,380,882 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1725,368,142 - 25,378,356 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1725,160,450 - 25,173,237 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01725,930,711 - 25,943,464 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1725,930,732 - 25,940,960 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11725,230,468 - 25,243,243 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01725,302,419 - 25,315,180 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01725,401,553 - 25,414,318 (-)NCBIUU_Cfam_GSD_1.0
Dpy30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629269,449,161 - 69,461,527 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364931,377,682 - 1,391,102 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364931,378,104 - 1,390,414 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPY30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3107,520,642 - 107,533,496 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13107,520,641 - 107,533,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23114,427,338 - 114,440,304 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DPY30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11475,455,246 - 75,471,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604536,590,854 - 36,617,394 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpy30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473813,694,135 - 13,706,364 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473813,694,135 - 13,706,465 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dpy30
152 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000039132
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6141223769Rat
1549905Stresp10Stress response QTL 106.830.0066stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)6127574569Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)6796416721301982Rat
8693645Alc31Alcohol consumption QTL 313.70.038drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61753252124011952Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)6134235784Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6141223769Rat
1578758Tcas9Tongue tumor susceptibility QTL 93.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)6137618905Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6141223769Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6139036266Rat
738024Sach5Saccharine consumption QTL 53.90.00039consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)6143394190Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6141223769Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6141223769Rat
738023Alc17Alcohol consumption QTL 173.10.003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)6127574569Rat
1354616Despr12Despair related QTL 120.0012locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)6127574569Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6142487980Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6142487980Rat
7411584Foco4Food consumption QTL 44.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6142838846Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2300176Bmd51Bone mineral density QTL 5111.70.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)6127574569Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449734434305Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6142487980Rat
1359023Bp272Blood pressure QTL 2722.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)61653614027261739Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
2300190Bmd52Bone mineral density QTL 5211.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)6127574569Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)6796416721301982Rat

Markers in Region
RH129555  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2621,141,416 - 21,141,596 (+)MAPPERmRatBN7.2
Rnor_6.0622,316,591 - 22,316,770NCBIRnor6.0
Rnor_5.0632,202,724 - 32,202,903UniSTSRnor5.0
RGSC_v3.4621,104,428 - 21,104,607UniSTSRGSC3.4
Celera620,698,746 - 20,698,925UniSTS
Cytogenetic Map6q13UniSTS
RH143741  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2621,126,034 - 21,126,208 (+)MAPPERmRatBN7.2
Rnor_6.0622,301,215 - 22,301,388NCBIRnor6.0
Rnor_5.0632,188,092 - 32,188,265UniSTSRnor5.0
RGSC_v3.4621,089,118 - 21,089,291UniSTSRGSC3.4
Celera620,683,367 - 20,683,540UniSTS
Cytogenetic Map6q13UniSTS
RH126914  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2621,141,395 - 21,141,644 (+)MAPPERmRatBN7.2
Rnor_6.0622,316,570 - 22,316,818NCBIRnor6.0
Rnor_5.0632,202,703 - 32,202,951UniSTSRnor5.0
RGSC_v3.4621,104,407 - 21,104,655UniSTSRGSC3.4
Celera620,698,725 - 20,698,973UniSTS
Cytogenetic Map6q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000039132   ⟹   ENSRNOP00000035649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl622,302,069 - 22,316,894 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087805   ⟹   ENSRNOP00000070382
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl621,120,947 - 21,141,432 (+)Ensembl
Rnor_6.0 Ensembl622,296,128 - 22,316,894 (+)Ensembl
RefSeq Acc Id: NM_001170545   ⟹   NP_001164016
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8626,878,753 - 26,893,580 (+)NCBI
mRatBN7.2621,126,889 - 21,141,720 (+)NCBI
Rnor_6.0622,302,069 - 22,316,894 (+)NCBI
Rnor_5.0632,183,006 - 32,203,027 (+)NCBI
Celera620,684,221 - 20,699,049 (+)NCBI
Sequence:
RefSeq Acc Id: NM_173117   ⟹   NP_775140
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8626,872,812 - 26,893,580 (+)NCBI
mRatBN7.2621,120,947 - 21,141,720 (+)NCBI
Rnor_6.0622,296,128 - 22,316,894 (+)NCBI
Rnor_5.0632,183,006 - 32,203,027 (+)NCBI
RGSC_v3.4621,084,031 - 21,104,731 (+)RGD
Celera620,678,371 - 20,699,049 (+)RGD
Sequence:
RefSeq Acc Id: NP_775140   ⟸   NM_173117
- UniProtKB: Q8K3E7 (UniProtKB/Swiss-Prot),   A6H9Y8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164016   ⟸   NM_001170545
- UniProtKB: Q8K3E7 (UniProtKB/Swiss-Prot),   A6H9Y8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070382   ⟸   ENSRNOT00000087805
Ensembl Acc Id: ENSRNOP00000035649   ⟸   ENSRNOT00000039132

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K3E7-F1-model_v2 AlphaFold Q8K3E7 1-99 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694415
Promoter ID:EPDNEW_R4939
Type:initiation region
Name:Dpy30_2
Description:dpy-30 histone methyltransferase complex regulatory subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4940  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0622,296,040 - 22,296,100EPDNEW
RGD ID:13694416
Promoter ID:EPDNEW_R4940
Type:initiation region
Name:Dpy30_1
Description:dpy-30 histone methyltransferase complex regulatory subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R4939  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0622,302,059 - 22,302,119EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708575 AgrOrtholog
BioCyc Gene G2FUF-38437 BioCyc
Ensembl Genes ENSRNOG00000027126 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087805.2 UniProtKB/TrEMBL
Gene3D-CATH cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Dpy-30_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DPY30_SDC1_DD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sdc1/DPY30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:286897 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 286897 ENTREZGENE
PANTHER DPY30 DOMAIN-CONTAINING 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DPY30-RELATED UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam Dpy-30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dpy30 PhenoGen
RatGTEx ENSRNOG00000027126 RatGTEx
UniProt A0A0G2JXS1_RAT UniProtKB/TrEMBL
  A6H9Y8 ENTREZGENE, UniProtKB/TrEMBL
  DPY30_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-24 Dpy30  dpy-30 histone methyltransferase complex regulatory subunit  Dpy30  dpy-30 homolog (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Dpy30  dpy-30 homolog (C. elegans)  Aip1  AIP1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 Aip1        Symbol and Name status set to provisional 70820 PROVISIONAL