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Gene: Scaf8 (SR-related CTD-associated factor 8) Rattus norvegicus

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Symbol:

Scaf8

Name:

SR-related CTD-associated factor 8

RGD ID:

708362

Description:

Enables RNA polymerase binding activity and protein domain specific binding activity. Involved in mRNA processing and transcription by RNA polymerase II. Located in nuclear matrix. Orthologous to human SCAF8 (SR-related CTD associated factor 8); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CTD-binding SR-like protein rA8; LOC245926; putative RNA-binding protein 16; Rbm16; RNA binding motif protein 16; RNA-binding motif protein 16; SR-like CTD-associated factor 8; SR-related and CTD-associated factor 8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCAF8 (SR-related CTD associated factor 8)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Scaf8 (SR-related CTD-associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scaf8 (SR-related CTD associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCAF8 (SR-related CTD associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCAF8 (SR-related CTD associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scaf8 (SR-related CTD associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SCAF8 (SR-related CTD associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCAF8 (SR-related CTD associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scaf8 (SR-related CTD associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Scaf8 (SR-related CTD associated factor 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ENO3 (enolase 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SCAF8 (SR-related CTD associated factor 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SCAF8 (SR-related CTD associated factor 8)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Scaf8 (SR-related CTD-associated factor 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	scaf8 (SR-related CTD-associated factor 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4266	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nrd-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	scaf8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	scaf8	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	46,132,972 - 46,321,162 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	46,132,873 - 46,261,174 (+)	Ensembl				GRCr8
mRatBN7.2	1	43,727,686 - 43,855,889 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	43,727,794 - 43,804,977 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	44,268,763 - 44,345,933 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	50,255,999 - 50,333,169 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	44,344,267 - 44,421,443 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	44,017,801 - 44,120,619 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	44,019,059 - 44,120,615 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	45,348,383 - 45,451,210 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	38,098,441 - 38,173,634 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	39,365,962 - 39,443,473 (+)	NCBI		Celera
RGSC_v3.1	1	38,101,385 - 38,176,578 (+)	NCBI
Cytogenetic Map	1	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (EXP)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dicrotophos (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

ivermectin (ISO)

leflunomide (ISO)

methapyrilene (EXP)

methimazole (EXP)

ochratoxin A (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA,IMP)

negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled (IEA,ISO,ISS)

positive regulation of DNA-templated transcription, elongation (IEA,ISO,ISS)

termination of RNA polymerase II transcription (IBA)

transcription by RNA polymerase II (IMP)

Cellular Component

cytoplasm (IBA)

mRNA cleavage factor complex (IBA)

nuclear matrix (IDA,IEA)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

Molecular Function

mRNA binding (IBA)

nucleic acid binding (IEA)

protein binding (ISO)

protein domain specific binding (IMP)

RNA binding (IEA,ISO,ISS)

RNA polymerase binding (IPI)

RNA polymerase core enzyme binding (IEA,ISO)

RNA polymerase II C-terminal domain phosphoserine binding (IEA,ISO,ISS)

RNA polymerase II complex binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	A nuclear matrix protein interacts with the phosphorylated C-terminal domain of RNA polymerase II.	Patturajan M, etal., Mol Cell Biol. 1998 Apr;18(4):2406-15.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins.	Yuryev A, etal., Proc Natl Acad Sci U S A 1996 Jul 9;93(14):6975-80.

Additional References at PubMed

PMID:18550522	PMID:31104839

Genomics

Comparative Map Data

Scaf8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	46,132,972 - 46,321,162 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	46,132,873 - 46,261,174 (+)	Ensembl				GRCr8
mRatBN7.2	1	43,727,686 - 43,855,889 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	43,727,794 - 43,804,977 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	44,268,763 - 44,345,933 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	50,255,999 - 50,333,169 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	44,344,267 - 44,421,443 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	44,017,801 - 44,120,619 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	44,019,059 - 44,120,615 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	45,348,383 - 45,451,210 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	38,098,441 - 38,173,634 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	39,365,962 - 39,443,473 (+)	NCBI		Celera
RGSC_v3.1	1	38,101,385 - 38,176,578 (+)	NCBI
Cytogenetic Map	1	q11	NCBI

SCAF8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	154,733,378 - 154,834,244 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	154,733,378 - 154,842,212 (+)	Ensembl			hg38	GRCh38
GRCh37	6	155,054,512 - 155,155,378 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	155,096,204 - 155,196,886 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	155,146,624 - 155,247,304	NCBI
Celera	6	155,788,784 - 155,889,386 (+)	NCBI		Celera
Cytogenetic Map	6	q25.2	NCBI
HuRef	6	152,617,284 - 152,717,924 (+)	NCBI		HuRef
CHM1_1	6	155,317,340 - 155,417,990 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	155,935,375 - 156,036,235 (+)	NCBI		T2T-CHM13v2.0

Scaf8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	3,165,247 - 3,249,134 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	3,165,247 - 3,249,134 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	3,114,972 - 3,198,859 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	3,114,972 - 3,198,859 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	3,114,972 - 3,198,859 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	3,069,614 - 3,155,341 (+)	NCBI		MGSCv36	mm8
Celera	17	3,684,798 - 3,738,527 (+)	NCBI		Celera
Cytogenetic Map	17	A1	NCBI
cM Map	17	1.96	NCBI

Scaf8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	7,282,264 - 7,333,560 (-)	Ensembl
ChiLan1.0	NW_004955439	7,282,264 - 7,361,855 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCAF8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	174,754,445 - 175,013,932 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	172,646,004 - 172,902,437 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	152,548,019 - 152,776,596 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	158,514,265 - 158,768,718 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	158,514,265 - 158,614,407 (+)	Ensembl			panPan2	panpan1.1

SCAF8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	44,562,589 - 44,777,864 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	44,562,567 - 44,683,903 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	45,392,943 - 45,614,868 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	44,739,807 - 44,961,881 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	44,739,839 - 44,821,101 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	44,607,055 - 44,828,954 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	44,479,298 - 44,700,580 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	45,034,853 - 45,256,810 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Scaf8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	139,802,085 - 139,979,881 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	7,059,081 - 7,231,870 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	7,059,075 - 7,289,656 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCAF8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	12,040,485 - 12,122,337 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	11,888,108 - 12,122,435 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	13,973,896 - 14,165,698 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCAF8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	82,270,422 - 82,448,887 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	82,271,029 - 82,370,850 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	54,668,476 - 54,894,702 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scaf8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624785	3,465,821 - 3,559,757 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624785	3,349,809 - 3,559,895 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Scaf8
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	195,511,355 - 195,640,186 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Scaf8
1704 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	487
Count of miRNA genes:	249
Interacting mature miRNAs:	291
Transcripts:	ENSRNOT00000065733
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	43457837	87558729	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	7746118	52746118	Rat
1357397	Bw41	Body weight QTL 41	4.19	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	29409279	74409279	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	46302615	91302615	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	43457837	87558729	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	46302615	91302615	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	42122968	87122968	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	6941022	51941022	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	6909353	51909353	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
631494	Bp95	Blood pressure QTL 95	40	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	17315378	51816258	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	6909353	51909353	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	46302615	91302615	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	7e-07	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	6909353	51909353	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	43457837	87558729	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	46302615	91302615	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	20508326	65508326	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	11684464	56684464	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	30708375	87558729	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	34565726	79565726	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	7746121	52746121	Rat
1558642	Prcr2	Prostate cancer resistance QTL 2	4.3		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	1	10379492	55379492	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	46302615	91302615	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	46302615	91302615	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	43509952	88509952	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	42122968	87122968	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	12820494	57820494	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	46302615	91302615	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	43509952	88509952	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	20656420	65656420	Rat

Markers in Region

BF400103

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	43,811,657 - 43,811,829 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	44,125,923 - 44,126,094	NCBI	Rnor6.0
Rnor_6.0	1	44,102,359 - 44,102,530	NCBI	Rnor6.0
Rnor_5.0	1	45,456,512 - 45,456,683	UniSTS	Rnor5.0
Rnor_5.0	1	45,432,644 - 45,432,815	UniSTS	Rnor5.0
RGSC_v3.4	1	38,180,500 - 38,180,671	UniSTS	RGSC3.4
Celera	1	39,450,153 - 39,450,324	UniSTS
RH 3.4 Map	1	438.88	UniSTS
Cytogenetic Map	1	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001428710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001428712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_139094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098309	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010062883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010062884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010062888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010062890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010062896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010062898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U49055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065733 ⟹ ENSRNOP00000062541

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	46,132,948 - 46,210,260 (+)	Ensembl
mRatBN7.2 Ensembl	1	43,727,794 - 43,804,977 (+)	Ensembl
Rnor_6.0 Ensembl	1	44,019,059 - 44,120,615 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083425 ⟹ ENSRNOP00000073484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	46,132,980 - 46,261,174 (+)	Ensembl
mRatBN7.2 Ensembl	1	43,727,984 - 43,804,977 (+)	Ensembl
Rnor_6.0 Ensembl	1	44,019,207 - 44,119,980 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109313 ⟹ ENSRNOP00000078015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	46,132,873 - 46,210,258 (+)	Ensembl
mRatBN7.2 Ensembl	1	43,727,794 - 43,804,977 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118656 ⟹ ENSRNOP00000087677

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	46,158,433 - 46,261,174 (+)	Ensembl
mRatBN7.2 Ensembl	1	43,753,147 - 43,804,977 (+)	Ensembl

RefSeq Acc Id:

NM_139094 ⟹ NP_620794

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,133,080 - 46,210,259 (+)	NCBI
mRatBN7.2	1	43,727,794 - 43,804,978 (+)	NCBI
Rnor_6.0	1	44,019,059 - 44,120,616 (+)	NCBI
Rnor_5.0	1	45,348,383 - 45,451,210 (+)	NCBI
RGSC_v3.4	1	38,098,441 - 38,173,634 (+)	RGD
Celera	1	39,365,962 - 39,443,473 (+)	RGD

Sequence:

show sequence

CCCGTGGGAGGAAGAGGAAGGAGGAGAAGGGGGTGGAGAGTGGAGGGGGCCGAAGCTTGAGTGT
GGAGTCCGCTTCCGAGCGGGGCGGAGAAACAGAGAAGGCGCCGCGCCAGCCCCTCCCCCACCAC
CGACCCGCCCCGACGGCCTCGGTCCTGCTCGCTGCGCCCGCCCCGCGACCATGCCGGGACCTCA
CGGGCGCTGAGGAGCGTCTCCAGCTAGCCGTGCTCCGCGGCCTTCTGGGCCCGTCGCCCGCCCT
TCCGCACGCAACGCGCCCAGCCGCCGCCTCTTCCTTCGCCGGGCCCCGGGCCTCTGCGCAGACA
ACATGGAGGCCGTGAAGACCTTCAACAGCGAGTTGTATTCGCTGAATGACTATAAGCCACCCAT
TTCTAAAGCAAAAATGACCCAGATTACAAAGGCAGCCATCAAAGCTATTAAGTTCTATAAACAT
GTGGTACAGAGCGTTGAGAAATTCATTCAGAAATGTAAACCAGAATACAAGGTACCCGGACTGT
ATGTTATTGACTCCATTGTGCGACAATCCCGGCATCAGGTTGGTCAAGAAAAGGATGTGTGTGC
ACCCAGATTTAGTAATAACATCATTAGCACTTTCCAGAATTTATATCGGTGCCCGGGGGATGAC
AAGAGTAAAATAGTGAGAGTATTAAACTTATGGCAGAAGAATAATGTTTTTAAGAGCGAGATTA
TCCAGCCTCTCCTGGATATGGCGGCAGGGATTCCTCCCCCAGTTGTCACCCCGGTTTTGGCCAG
CACCACTGTAGCCATGAGCAACACTCCAGGAACACCTGTGACACCTGTTACTCCAGCCAATGTG
GTTCAAGGCCTACCTGATCCATGGGTATCGCAGATAACAAACACAGACACACTGGCAGCTGTTG
CCCAGATCCTACAAAGTCCTCAAGGTCAACAGCTTCAGCAACTAATACAGACCTTACAGATACA
ACAGCAGAAGCCCCAGCCCTCTATCCTTCAGGCTTTGGATGCTGGCCTTGTGGTTCAGTTGCAG
GCACTCACTGCACAGCTTACAGCTGCAGCTGCTGCAGCCAACACACTTACTCCCTTGGACCAGG
GAGTCTCTTTCAACAAGAAGTTGATGGATAGATTTGATTTTGGGGAAGATTCTGAGCATAGTGA
AGAATCCAAAAAGGAAATTCCTACTCCTCAACTCTCTCACGTTTCTGAGTCTGTGAACAACTCC
ATCTTCCATCAGATAGCAGAACAGCTGCAGCAGCAGAACCTGGAGCAGTTGCGGCAGCAGCTCC
TGGAGCAGCAGCAGCCTCAGAAGGTAACTCCTCAGGACAGCCAGGAGGGAGCATTTGGCTCTGA
GCACTCAGCTTCACCCTCACAAGGGAGTAGCCAACAGCATTTTCTGGAACCTGAAGCAAATTTA
GATGATTCCATAGACATTCAGCAACAGGATATGGATATTGATGAAGGGCAAGATGTTGTTGAAG
AGGAGATCTTTGAACCAGAAGCTAAGAAAGTAGCTGTTCGCTCAAGATCAAGAACTCATTCACG
ATCTCGATCAAGGTCACCAAGAAAACGGAGGTCCAGGTCACGCTCTGGGTCCCGAAAGCGAAAG
CATAGGAAGAGGTCTCGCTCCCGCTCCAGAGAGAGAAAGAGAAAATCCTCACGTTCCTATTCAA
GTGAACGCAGAGCCAGGGAAAGGGAGAAAGAACGCCAAAAAAAGGGCTTGCCTCCTGTCAGATC
GAAAACGCTAAGTGTATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTACACAG
CAAGATTTAACCAACCTTTTTGAGGAGTTTGGGCAAATCGAATCCATTAATATGATTCCACCCA
GGGGCTGTGCATATGTCTGTATGGTTCATCGACAAGATTCATTTCGGGCTCTCCAGAAACTGAG
TTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAGATTGCCTGGGCTTTGAACAAAGGTGTA
AAGACAGAATACAAACAGTTCTGGGACGTGGATCTTGGAGTCACATATATACCCTGGGAAAAAG
TTAAAGTAGATGACTTGGATGGCTTTGCAGAGGGAGGCATGATTGATCAGGAAACTGTAAATGC
TGAATGGGAAACTGTGAAAACCTCAGAACCCGTTAAAGAGACTGTCCAGACGACACAGAGTCCA
GCTGCAGTTGAGAAGGAGACAGTGGTCACAACGCAGTCAGAGGTTTTCCCTCCTCCTGTCACCA
TGCTGCAGATTCCTGTAGCACCAACCGTTCCTGCAGTTAGCTTAGTTCCACCAGCGTTTCCTGT
GTCGATGCCTGTCCCCCCTCCTGGATTCAGCCCCATCCCTCCACCTCCTTTTCTACGAGCAAGT
TTTAACCCTTCACAACCACCTCCTGGTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTACCTC
CCCCTGCAATCCCACCCGTAGTACCAACATCTTTAGTGCAACCACCATTGTCTATGACCCCAGA
AACTGTGAAAGATGTTGGATTTGGCAGCCTTGTTTTACCAGGTGGTTCTGTTGCTGGCAATCTT
GCTCCTTCAACTCTACCAGCTGGAAATGTTTTTAATCCTCCCAGTAAAGCAGAGCCTGAAGAAA
AAGTACCTCACCTTACAGAACACCAGATTCCTTCTGGTGAGAATACCAGACCAGTGATTCCAAG
TGATATTCCAAGCAGTGCTCCAATGTTAGCACAGCCGCCTGGGGCCTCAAACACCTCTGGGATC
CTGTGCGTGCAGAGACCAAACGTATCAAGCAATTCTGAAATTCTGGGGGTTCGTCCAGCCAATG
TTTCCAACAGTGCTGCGATTATGGGAGCCCAGCCACCAAATATGCTCAATAACTCTGGAATTTT
GGGCATACAGCCACCAAATGTGTCCAGTGGCTCTGGACTTCTTGGGGTACTGCCTCCAAACTTG
CCTAACAACTCTGGACTTGTAGGACTACAGCCACCAAATGTTACAAATCCTGCTGGACTTTTGG
GAACACAGCCACCAATTGGACCTCAAAACTTACCCCCTTTAACCATCCCTGCTCAAAGGATGCC
TGCGTTGCCAATGTTAGACATTCGTCCGGGACTGATAGCACAGGCTCCTGGGCCAAGATTCCCT
TTACTACAGCCTGGAATTCCACCACAACGGGGTATCCCTCCCCCATCGGTACTTGACGCAGCTC
TTCATCCACCACCCCGTGGACCTTTTCCTCCAGGGGATCTTTTTAGTCAGCCAGAAAGACCTTT
TCTGGCTCCTGGAAGACCAAATATAGACAGTGTTCCTAACCCAGATAAAAGAATACCACTTGGG
AATGACAATATCCAGCAGGAAGGGGATAGAGATTACCGCTTTCCTCCTATAGAAACCAGGGAGG
GCATTAATAGACCTCCTCCAGTGGATGTTAGGGATGTGGTTGGACGACCTATAGATCCCAGAGA
AGGCCCTGGTAGGCCTCCGTTAGATGGTAGGGATCATTTTGGAAGACCTCCAGTGGACATGAGA
GAGACTCTTGTGAGGCCAGGTCTAGACCACCTTGGCCGAAGAGACCACTTTGGCTTTCCCCCAG
AAAAGCCTTGGGGGCCTAGAGATTTCGATGAGAGAGAGCACCGAGTTCTGCCTGTCTTTGGTGG
TCCAAAGGGCTTACATGAAGAAAGAGGCAGATTTCGGGCTGGAAATTATCGATTTGATCCTAGA
AGTGGTCCTTGGAACAGAGGATTTGGACAAGAAGTTCACAGAGATTTTGATGACCGCAGAAGAC
CCTGGGAGAGGCAGAGGGATAGGGATGACAGAGATTTTGATTTCTGCAGAGAAATTAATGGGAA
TCGTCTTGGACGAGATAGAATTCAAAACACTTGGGTTCCCCCTCCTCATGCTCGGGTTTTTGAT
TATTTCGAAGGGGCCACTTCTCAACGGAAAGGTGAGAATGTGCCTCAAGTTAATGGTGGAAATA
CAGAGAGACATGCTCCGCCACCGCCTTTGCCAGTGCAGAAGGACCCTGAACTCTATGAGAAGCT
GGCGTCTTCAGGAGACGCAGACAAGGAGGAGAGCGGCACAGCTGCTGGTGTAGAGAGTGAAGCG
GTGGTAGAAAGCACAGAGACTGAGGGGACATAACATCGCTCAGTAGGTAAAAGAAACCTTTTGT
ACAGTTGTCATCTCTGTAAGAGGTTAATGGCTGACTGCACCACAGTTGTTCACGTTTATCTACC
AGAACTAAGTTAATCTGATGTACGTGTTCACCTTTCTCTTAAAATAATTGTACAACTGACTTGT
ATAGACATTGTTCTTAATATGAACATGGTAGGTAAACATTTTTTTATTTTTCTGATAAAGTATA
AATGTTGCCCCAGATTCTTTTAACGTCAAGGAGATGCTAACAGCTTGTCGAGACTTCCTATGGA
AGAGAAGGTTTTAGACACAGTCATTGGGATGGGTATGGCAATGACATATTTCAGAACAGCAAGG
TGTGGCACATCTCCATATCTCTAGGCTGCTGCAGGGTTTTAAGGTGACAGACAAAGCTGTGATA
TTTTATGCAAGGACTGGCTCTAGATTCTTGAGGAGCATAATACAGAGATTTTAAAAAGTGATTT
TGTAAAAATCTCCACTATGGTCTCTGTTACTCCAAAGTAAGTGTGTGTGATTTGTTCCTCATAC
TGCAGTAAGTAAAAAAGAAAAGAAGCAAACAACATAAACATTCAAATACGTTTTAATGTTGGGT
GAATTTTGTTTTTAGATGCCAATAAAACTTATTTGTTTGAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006227858 ⟹ XP_006227920

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,972 - 46,210,262 (+)	NCBI
mRatBN7.2	1	43,727,686 - 43,804,981 (+)	NCBI
Rnor_6.0	1	44,017,801 - 44,120,619 (+)	NCBI
Rnor_5.0	1	45,348,383 - 45,451,210 (+)	NCBI

Sequence:

show sequence

TTTAAAGGGCAATGGAAAAGTATTGCTGGGGGTTTAAGCAAGGGGTGTGTCTAAAGTAGATCAT
TTTGGCTACTGTCCTAGAGACAGCAGGATCATCAGGGTTAGGCCTGTGAGCGCTGGAGGAGGTG
GAGATGACTTGGTTTTGAGATAGCAGGTGAAAAAAAAAATGTAAGCTTCCCATCCTAATTTTTA
CCCTCGAAACAGCCAGCACCAGGAGCAAAGCTGTGAATGAAGCGGACTTAAAGATTGTTTCACA
GGGCTCTGGACTTAGCTCTTAGGAAATACTTTAATCTAAAGCAACCCATTTTTCTCTCCCTTTT
CGTTTTGCATGAATTTGGGGAGGAGCGATGGCAAATGACTTTCAACAAGGGTGGTAGTATGTGT
GGGTGCGTTCACTGAGAACAATCGTTCCCCGATCCCGGTTTAACTTCAAGCAAGCACTAAGCGG
CTTCACCAGTAGTAGCACGTCTCGATCCTAAAATCCGCAATCATCCTCTGCTCCGATAACTTGG
GGCCAAATTCCTTGGGAATAACCCGCTTCCTAAAAAACAAACAAACAAACAAACAAACAACCCA
AACAACAACAAAACGGGTTGCATTTCCGCGTCCAAACGGGGGCGTTATGGGTTCCTTCCCGCCT
CCGGGATGCCCAGGCCCGGCTCGCACTCTCGCATTTCCCAGACGGCGGTTGCCCGCGTCCCGAG
CCAGCTTTTGTGTGCAGCGTTTGCTCCCCGCCACTAGGACTCCAAGGCACACGGTGGCGACGAG
GAATCTAAGTCAATACTCGCTAAAGTTCTCAAAGGCACTTCAACCCCGCCTCCACGGCAGGCGC
CATCCCACCGGGAAGCAGCAACGGAGACACCGTAGTTTCCGCCATTCCGTCTTTCCCCTGCACT
TTGGGTTTTTCTCAGAGCAACGCTCACCGGCGGGACCAGCCACCGAGAGTCCCTCTGTCCGCGC
CGCAGCGCTCACTCCCGCAGCCGGGGACGCGGGCAGCACAGAGCCCGGGTCCCCCTCTCCCGCC
GCAGCGACTCCGGCCTCTCTGGCCTGTACCGTCTCGATGGTATGGCGCGGCCGCAGGCCTCGCG
CGGCCTGGTCGCCAGGGGGCGCGCTGGCCGGCGCCGCCGACTCTGAGTGCGCGGCTCGACCGCG
TCCGCCATATTGGATGCCGCAGCCGCCGCGGTCAGCGCTTCCTCCTGTGTCTTCGCTGCGCGTT
GCAGGTTCCCGCGGCCTAGGCGGCAGGGAGGTGACACAGGAGCCCGTGGGAGGAAGAGGAAGGA
GGAGAAGGGGGTGGAGAGTGGCTCCAGCTAGCCGTGCTCCGCGGCCTCCTGGGCCCGTCGCCCG
CCCTTCCGCACGCAACGCGCCCAGCCGCCGCCTCTTCCTTCGCCGGGCCCCGGGCCTCTGCGCA
GACAACATGGAGGCCGTGAAGACCTTCAACAGCGAGTTGTATTCGCTGAATGACTATAAGCCAC
CCATTTCTAAAGCAAAAATGACCCAGATTACAAAGGCAGCCATCAAAGCTATTAAGTTCTATAA
ACATGTGGTACAGAGCGTTGAGAAATTCATTCAGAAATGTAAACCAGAATACAAGGTACCCGGA
CTGTATGTTATTGACTCCATTGTGCGACAATCCCGGCATCAGTTTGGTCAAGAAAAGGATGTGT
TTGCACCCAGATTTAGTAATAACATCATTAGCACTTTCCAGAATTTATATCGGTGCCCGGGGGA
TGACAAGAGTAAAATAGTGAGAGTATTAAACTTATGGCAGAAGAATAATGTTTTTAAGAGCGAG
ATTATCCAGCCTCTCCTGGATATGGCGGCAGGGATTCCTCCCCCAGTTGTCACCCCGGTTTTGG
CCAGCACCACTGCAGCCATGAGCAACACTCCAGGAACACCTGTGACACCTGTTACTCCAGCCAA
TGTGGTTCAAGGCCTACCTGATCCATGGGTATCGCAGATAACAAACACAGACACACTGGCAGCT
GTTGCCCAGATCCTACAAAGTCCTCAAGGTCAACAGCTTCAGCAACTAATACAGACCTTACAGA
TACAACAGCAGAAGCCCCAGCCCTCTATCCTTCAGGCTTTGGATGCTGGCCTTGTGGTTCAGTT
GCAGGCACTCACTGCACAGCTTACAGCTGCAGCTGCTGCAGCCAACACACTTACTCCCTTGGAC
CAGGGAGTCTCTTTCACCAGGAAGTTGATGGATAGATTTGATTTTGGGGAAGATTCTGAGCATA
GTGAAGAATCCAAAAAGGAAATTCCTACTCCTCAACTCTCTCACGTTTCTGAGTCTGTGAACAA
CTCCATCTTCCATCAGATAGCAGAACAGCTGCAGCAGCAGAACCTGGAGCAGTTGCGGCAGCAG
CTCCTGGAGCAGCAGCAGCCTCAGAAGGTAACTCCTCAGGACAGCCAGGAGGGAGCATTTGGCT
CTGAGCACTCAGCTTCACCCTCACAAGGGAGTAGCCAACAGCATTTTCTGGAACCTGAAGCAAA
TTTAGATGATTCCATAGACATTCAGCAACAGGATATGGATATTGATGAAGGGCAAGATGTTGTT
GAAGAGGAGATCTTTGAACCAGAAGCTAAGAAAGTAGCTGTTCGCTCAAGATCAAGAACTCATT
CACGATCTCGATCAAGGTCACCAAGAAAACGGAGGTCCAGGTCACGCTCTGGGTCCCGAAAGCG
AAAGCATAGGAAGAGGTCTCGCTCCCGCTCCAGAGAGAGAAAGAGAAAATCCTCACGTTCCTAT
TCAAGTGAACGCAGAGCCAGGGAAAGGGAGAAAGAACGCCAAAAAAAGGGCTTGCCTCCTGTCA
GATCGAAAACGCTAAGTGTATGCAGCACTACTCTCTGGGTTGGCCAAGTGGACAAGAAGGCTAC
ACAGCAAGATTTAACCAACCTTTTTGAGGAGTTTGGGCAAATCGAATCCATTAATATGATTCCA
CCCAGGGGCTGTGCATATGTCTGTATGGTTCATCGACAAGATTCATTTCGGGCTCTCCAGAAAC
TGAGTTCAGGATCCTATAAAATTGGTTCCAAGGTCATTAAGATTGCCTGGGCTTTGAACAAAGG
TGTAAAGACAGAATACAAACAGTTCTGGGACGTGGATCTTGGAGTCACATATATACCCTGGGAA
AAAGTTAAAGTAGATGACTTGGATGGCTTTGCAGAGGGAGGCATGATTGATCAGGAAACTGTAA
ATGCTGAATGGGAAACTGTGAAAACCTCAGAACCCGTTAAAGAGACTGTCCAGACGACACAGAG
TCCAGCTGCAGTTGAGAAGGAGACAGTGGTCACAACGCAGTCAGAGGTTTTCCCTCCTCCTGTC
ACCATGCTGCAGATTCCTGTAGCACCAACCGTTCCTGCAGTTAGCTTAGTTCCACCAGCGTTTC
CTGTGTCGATGCCTGTCCCCCCTCCTGGATTCAGCCCCATCCCTCCACCTCCTTTTCTACGAGC
AAGTTTTAACCCTTCACAACCACCTCCTGGTTTTATGCCACCTCCAGTTCCCCCACCTGTGGTA
CCTCCCCCTGCAATCCCACCCGTAGTACCAACATCTTTAGTGCAACCACCATTGTCTATGACCC
CAGAAACTGTGAAAGATGTTGGATTTGGCAGCCTTGTTTTACCAGGTGGTTCTGTTGCTGGCAA
TCTTGCTCCTTCAACTCTACCAGCTGGAAATGTTTTTAATCCTCCCAGTAAAGCAGAGCCTGAA
GAAAAAGTACCTCACCTTACAGAACACCAGATTCCTTCTGGTGAGAATACCAGACCAGTGATTC
CAAGTGATATTCCAAGCAGTGCTCCAATGTTAGCACAGCCGCCTGGGGCCTCAAACACCTCTGG
GATCCTGTGCGTGCAGAGACCAAACGTATCAAGCAATTCTGAAATTCTGGGGGTTCGTCCAGCC
AATGTTTCCAACAGTGCTGCGATTATGGGAGCCCAGCCACCAAATATGCTCAATAACTCTGGAA
TTTTGGGCATACAGCCACCAAATGTGTCCAGTGGCTCTGGACTTCTTGGGGTACTGCCTCCAAA
CTTGCCTAACAACTCTGGACTTGTAGGACTACAGCCACCAAATGTTACAAATCCTGCTGGACTT
TTGGGAACACAGCCACCAATTGGACCTCAAAACTTACCCCCTTTAACCATCCCTGCTCAAAGGA
TGCCTGCGTTGCCAATGTTAGACATTCGTCCGGGACTGATAGCACAGGCTCCTGGGCCAAGATT
CCCTTTACTACAGCCTGGAATTCCACCACAACGGGGTATCCCTCCCCCATCGGTACTTGACGCA
GCTCTTCATCCACCACCCCGTGGACCTTTTCCTCCAGGGGATCTTTTTAGTCAGCCAGAAAGAC
CTTTTCTGGCTCCTGGAAGACCAAATATAGACAGTGTTCCTAACCCAGATAAAAGAATACCACT
TGGGAATGACAATATCCAGCAGGAAGGGGATAGAGATTACCGCTTTCCTCCTATAGAAACCAGG
GAGGGCATTAATAGACCTCCTCCAGTGGATGTTAGGGATGTGGTTGGACGACCTATAGATCCCA
GAGAAGGCCCTGGAAGGCCTCCGTTAGATGGTAGGGATCATTTTGGAAGACCTCCAGTGGACAT
GAGAGAGACTCTTGTGAGGCCAGGTCTAGACCACCTTGGCCGAAGAGACCACTTTGGCTTTCCC
CCAGAAAAGCCTTGGGGGCCTAGAGATTTCGATGAGAGAGAGCACCGAGTTCTGCCTGTCTTTG
GTGGTCCAAAGGGCTTACATGAAGAAAGAGGCAGATTTCGGGCTGGAAATTATCGATTTGATCC
TAGAAGTGGTCCTTGGAACAGAGGATTTGGACAAGAAGTTCACAGAGATTTTGATGACCGCAGA
AGACCCTGGGAGAGGCAGAGGGATAGGGATGACAGAGATTTTGATTTCTGCAGAGAAATTAATG
GGAATCGTCTTGGACGAGATAGAATTCAAAACACTTGGGTTCCCCCTCCTCATGCTCGGGTTTT
TGATTATTTCGAAGGGGCCACTTCTCAACGGAAAGGTGAGAATGTGCCTCAAGTTAATGGTGAA
AATACAGAGAGACATGCTCCGCCACCGCCTTTGCCAGTGCAGAAGGACCCTGAACTCTATGAGA
AGCTGGCGTCTTCAGGAGACGCAGACAAGGAGGAGAGCGGCACAGCTGCTGGTGTAGAGAGTGA
AGCGGTGGTAGAAAGCACAGAGACTGAGGGGACATAACATCGCTCAGTAGGTAAAAGAAACCTT
TTGTACAGTTGTCATCTCTGTAAGAGGTTAATGGCTGACTGCACCACAGTTGTTCACGTTTATC
TACCAGAACTAAGTTAATCTGATGTTCGTGTTCACCTTTCTCTTAAAATAATTGTACAACTGAC
TTGTATAGACATTGTTCTTAATATGAACATGGTAGGTAAACATTTTTTTATTTTTCTGATAAAG
TATAAATGTTGCCCCAGATTCTTTTAACGTCAAGGAGATGCTAACAGCTTGTCGAGACTTCCTA
TGGAAGAGAAGGTTTTAGACACAGTCATTGGGATGGGTATGGCAATGACATATTTCAGAACAGC
AAGGTGTGGCACATCTCCATATCTCTAGGCTGCTGCAGGGTTTTAAGGTGACAGACAAAGCTGT
GATATTTTATGCAAGGACTGGCTCTAGATTCTTGAGGAGCATAATACAGAGATTTTAAAAAGTG
ATTTTGTAAAAATCTCCACTATGGTCTCTGTTACTCCAAAGTAAGTGTGTGTGATTTGTTCCTC
ATACTGCAGTAAGTAAAAAAGAAAAGAAGCAAACAACATAAACATTCAAATACGTTTTAATGTT
GGGTGAATTTTGTTTTTAGATGCCAATAAAACTTATTTGTTTGATAA

hide sequence

RefSeq Acc Id:

XM_039098275 ⟹ XP_038954203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,976 - 46,261,166 (+)	NCBI
mRatBN7.2	1	43,727,784 - 43,855,889 (+)	NCBI

RefSeq Acc Id:

XM_039098309 ⟹ XP_038954237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,983 - 46,210,262 (+)	NCBI
mRatBN7.2	1	43,727,784 - 43,804,981 (+)	NCBI

RefSeq Acc Id:

XM_039098351 ⟹ XP_038954279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,983 - 46,210,262 (+)	NCBI
mRatBN7.2	1	43,727,784 - 43,804,981 (+)	NCBI

RefSeq Acc Id:

XM_039098360 ⟹ XP_038954288

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,159,293 - 46,210,262 (+)	NCBI
mRatBN7.2	1	43,754,010 - 43,804,981 (+)	NCBI

RefSeq Acc Id:

XM_063280810 ⟹ XP_063136880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,984 - 46,292,359 (+)	NCBI

RefSeq Acc Id:

XM_063280821 ⟹ XP_063136891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,983 - 46,238,437 (+)	NCBI

RefSeq Acc Id:

XM_063280830 ⟹ XP_063136900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,133,070 - 46,261,166 (+)	NCBI

RefSeq Acc Id:

XM_063280834 ⟹ XP_063136904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,133,069 - 46,210,262 (+)	NCBI

RefSeq Acc Id:

XM_063280845 ⟹ XP_063136915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,983 - 46,261,166 (+)	NCBI

RefSeq Acc Id:

XM_063280850 ⟹ XP_063136920

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,133,067 - 46,210,262 (+)	NCBI

RefSeq Acc Id:

XR_010062883

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,984 - 46,321,162 (+)	NCBI

RefSeq Acc Id:

XR_010062884

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,984 - 46,321,162 (+)	NCBI

RefSeq Acc Id:

XR_010062888

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,984 - 46,321,162 (+)	NCBI

RefSeq Acc Id:

XR_010062890

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,983 - 46,321,162 (+)	NCBI

RefSeq Acc Id:

XR_010062896

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,983 - 46,321,162 (+)	NCBI

RefSeq Acc Id:

XR_010062898

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	46,132,983 - 46,261,166 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001415639	(Get FASTA)	NCBI Sequence Viewer
	NP_001415641	(Get FASTA)	NCBI Sequence Viewer
	NP_620794	(Get FASTA)	NCBI Sequence Viewer
	XP_006227920	(Get FASTA)	NCBI Sequence Viewer
	XP_038954203	(Get FASTA)	NCBI Sequence Viewer
	XP_038954237	(Get FASTA)	NCBI Sequence Viewer
	XP_038954279	(Get FASTA)	NCBI Sequence Viewer
	XP_038954288	(Get FASTA)	NCBI Sequence Viewer
	XP_063136880	(Get FASTA)	NCBI Sequence Viewer
	XP_063136891	(Get FASTA)	NCBI Sequence Viewer
	XP_063136900	(Get FASTA)	NCBI Sequence Viewer
	XP_063136904	(Get FASTA)	NCBI Sequence Viewer
	XP_063136915	(Get FASTA)	NCBI Sequence Viewer
	XP_063136920	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52656	(Get FASTA)	NCBI Sequence Viewer
	EDL92828	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062541
	ENSRNOP00000073484
	ENSRNOP00000078015
GenBank Protein	Q63623	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_620794 ⟸ NM_139094

- UniProtKB:

Q63623 (UniProtKB/Swiss-Prot), F1LPT8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLY
VIDSIVRQSRHQVGQEKDVCAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEII
QPLLDMAAGIPPPVVTPVLASTTVAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVA
QILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLTPLDQG
VSFNKKLMDRFDFGEDSEHSEESKKEIPTPQLSHVSESVNNSIFHQIAEQLQQQNLEQLRQQLL
EQQQPQKVTPQDSQEGAFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDIDEGQDVVEE
EIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSS
ERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPR
GCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKV
KVDDLDGFAEGGMIDQETVNAEWETVKTSEPVKETVQTTQSPAAVEKETVVTTQSEVFPPPVTM
LQIPVAPTVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPP
PAIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVAGNLAPSTLPAGNVFNPPSKAEPEEK
VPHLTEHQIPSGENTRPVIPSDIPSSAPMLAQPPGASNTSGILCVQRPNVSSNSEILGVRPANV
SNSAAIMGAQPPNMLNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNVTNPAGLLG
TQPPIGPQNLPPLTIPAQRMPALPMLDIRPGLIAQAPGPRFPLLQPGIPPQRGIPPPSVLDAAL
HPPPRGPFPPGDLFSQPERPFLAPGRPNIDSVPNPDKRIPLGNDNIQQEGDRDYRFPPIETREG
INRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDMRETLVRPGLDHLGRRDHFGFPPE
KPWGPRDFDEREHRVLPVFGGPKGLHEERGRFRAGNYRFDPRSGPWNRGFGQEVHRDFDDRRRP
WERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKGENVPQVNGGNT
ERHAPPPPLPVQKDPELYEKLASSGDADKEESGTAAGVESEAVVESTETEGT

hide sequence

RefSeq Acc Id:	XP_006227920 ⟸ XM_006227858
- Peptide Label:	isoform X8
- UniProtKB:	Q63623 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGSFPPPGCPGPARTLAFPRRRLPASRASFCVQRLLPATRTPRHTVATRNLSQYSLKFSKALQP RLHGRRHPTGKQQRRHRSFRHSVFPLHFGFFSEQRSPAGPATESPSVRAAALTPAAGDAGSTEP GSPSPAAATPASLACTVSMVWRGRRPRAAWSPGGALAGAADSECAARPRPPYWMPQPPRSALPP VSSLRVAGSRGLGGREVTQEPVGGRGRRRRGWRVAPASRAPRPPGPVARPSARNAPSRRLFLRR APGLCADNMEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKP EYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN NVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVSQITN TDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAAN TLTPLDQGVSFTRKLMDRFDFGEDSEHSEESKKEIPTPQLSHVSESVNNSIFHQIAEQLQQQNL EQLRQQLLEQQQPQKVTPQDSQEGAFGSEHSASPSQGSSQQHFLEPEANLDDSIDIQQQDMDID EGQDVVEEEIFEPEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKR KSSRSYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIE SINMIPPRGCAYVCMVHRQDSFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGV TYIPWEKVKVDDLDGFAEGGMIDQETVNAEWETVKTSEPVKETVQTTQSPAAVEKETVVTTQSE VFPPPVTMLQIPVAPTVPAVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPP VPPPVVPPPAIPPVVPTSLVQPPLSMTPETVKDVGFGSLVLPGGSVAGNLAPSTLPAGNVFNPP SKAEPEEKVPHLTEHQIPSGENTRPVIPSDIPSSAPMLAQPPGASNTSGILCVQRPNVSSNSEI LGVRPANVSNSAAIMGAQPPNMLNNSGILGIQPPNVSSGSGLLGVLPPNLPNNSGLVGLQPPNV TNPAGLLGTQPPIGPQNLPPLTIPAQRMPALPMLDIRPGLIAQAPGPRFPLLQPGIPPQRGIPP PSVLDAALHPPPRGPFPPGDLFSQPERPFLAPGRPNIDSVPNPDKRIPLGNDNIQQEGDRDYRF PPIETREGINRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDMRETLVRPGLDHLGRR DHFGFPPEKPWGPRDFDEREHRVLPVFGGPKGLHEERGRFRAGNYRFDPRSGPWNRGFGQEVHR DFDDRRRPWERQRDRDDRDFDFCREINGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKGENV PQVNGENTERHAPPPPLPVQKDPELYEKLASSGDADKEESGTAAGVESEAVVESTETEGT hide sequence

Ensembl Acc Id:

ENSRNOP00000062541 ⟸ ENSRNOT00000065733

Ensembl Acc Id:

ENSRNOP00000073484 ⟸ ENSRNOT00000083425

RefSeq Acc Id:	XP_038954203 ⟸ XM_039098275
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038954279 ⟸ XM_039098351
- Peptide Label:	isoform X5
- UniProtKB:	Q63623 (UniProtKB/Swiss-Prot), A0A8I5XWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038954237 ⟸ XM_039098309
- Peptide Label:	isoform X2
- UniProtKB:	Q63623 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038954288 ⟸ XM_039098360
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6A4L7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078015 ⟸ ENSRNOT00000109313

Ensembl Acc Id:

ENSRNOP00000087677 ⟸ ENSRNOT00000118656

RefSeq Acc Id:	XP_063136915 ⟸ XM_063280845
- Peptide Label:	isoform X5
- UniProtKB:	Q63623 (UniProtKB/Swiss-Prot), A0A8I5XWQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136891 ⟸ XM_063280821
- Peptide Label:	isoform X1
- UniProtKB:	Q63623 (UniProtKB/Swiss-Prot), F1LPT8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136880 ⟸ XM_063280810
- Peptide Label:	isoform X1
- UniProtKB:	Q63623 (UniProtKB/Swiss-Prot), F1LPT8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136920 ⟸ XM_063280850
- Peptide Label:	isoform X6
- UniProtKB:	Q63623 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063136904 ⟸ XM_063280834
- Peptide Label:	isoform X4
- UniProtKB:	Q63623 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063136900 ⟸ XM_063280830
- Peptide Label:	isoform X3

Protein Domains

CID RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63623-F1-model_v2	AlphaFold	Q63623	1-1268	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689597

Promoter ID:

EPDNEW_R122

Type:

multiple initiation site

Name:

Scaf8_1

Description:

SR-related CTD-associated factor 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R123

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	44,018,959 - 44,019,019	EPDNEW

RGD ID:

13689603

Promoter ID:

EPDNEW_R123

Type:

initiation region

Name:

Scaf8_2

Description:

SR-related CTD-associated factor 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R122

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	44,019,237 - 44,019,297	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708362	AgrOrtholog
BioCyc Gene	G2FUF-61668	BioCyc
Ensembl Genes	ENSRNOG00000016919	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000065733	ENTREZGENE
	ENSRNOT00000083425	ENTREZGENE
	ENSRNOT00000109313	ENTREZGENE
Gene3D-CATH	1.25.40.90	UniProtKB/Swiss-Prot
	3.30.70.330	UniProtKB/Swiss-Prot
InterPro	CID_dom	UniProtKB/Swiss-Prot
	ENTH_VHS	UniProtKB/Swiss-Prot
	Nucleotide-bd_a/b_plait_sf	UniProtKB/Swiss-Prot
	RBD_domain_sf	UniProtKB/Swiss-Prot
	RRM_dom	UniProtKB/Swiss-Prot
	SCAF8_RRM	UniProtKB/Swiss-Prot
	SR-CTD_assoc_factor	UniProtKB/Swiss-Prot
KEGG Report	rno:245926	UniProtKB/Swiss-Prot
NCBI Gene	245926	ENTREZGENE
PANTHER	RNA PROCESSING PROTEIN LD23810P	UniProtKB/Swiss-Prot
	SR-RELATED CTD ASSOCIATED FACTOR 8	UniProtKB/Swiss-Prot
Pfam	CTD_bind	UniProtKB/Swiss-Prot
	RRM_1	UniProtKB/Swiss-Prot
PhenoGen	Scaf8	PhenoGen
PROSITE	CID	UniProtKB/Swiss-Prot
	RRM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000016919	RatGTEx
SMART	RPR	UniProtKB/Swiss-Prot
	RRM	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48464	UniProtKB/Swiss-Prot
	SSF54928	UniProtKB/Swiss-Prot
UniProt	A0A0G2K5M7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5XWQ5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A4L7	ENTREZGENE, UniProtKB/TrEMBL
	F1LPT8	ENTREZGENE, UniProtKB/TrEMBL
	Q63623	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Scaf8	SR-related CTD-associated factor 8	Rbm16	RNA binding motif protein 16	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Rbm16	RNA binding motif protein 16	LOC245926		Symbol updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar