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Gene: Synj2bp (synaptojanin 2 binding protein) Rattus norvegicus

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Symbol:

Synj2bp

Name:

synaptojanin 2 binding protein

RGD ID:

69400

Description:

Predicted to enable type II activin receptor binding activity. Involved in intracellular distribution of mitochondria. Located in mitochondrial outer membrane. Orthologous to human SYNJ2BP (synaptojanin 2 binding protein); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

mitochondrial outer membrane protein 25; NPW16; Omp25; outer membrane protein; synaptojanin-2-binding protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYNJ2BP (synaptojanin 2 binding protein)	HGNC	Ensembl, HomoloGene, Inparanoid, OrthoDB, Panther
Mus musculus (house mouse):	Synj2bp (synaptojanin 2 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Synj2bp (synaptojanin 2 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYNJ2BP (synaptojanin 2 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYNJ2BP (synaptojanin 2 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101967553 (synaptojanin-2-binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYNJ2BP (synaptojanin 2 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SYNJ2BP (synaptojanin 2 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Synj2bp (synaptojanin 2 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Synj2bp (synaptojanin 2 binding protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	COX16 (cytochrome c oxidase assembly factor COX16)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	SYNJ2BP (synaptojanin 2 binding protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Synj2bp (synaptojanin 2 binding protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	S2bpcox16 (synaptojanin 2 binding protein Cox16 readthrough)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	synj2bp (synaptojanin 2 binding protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mics-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Caenorhabditis elegans (roundworm):	mics-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	synj2bp	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	synj2bp	Alliance	DIOPT (OMA\|OrthoFinder)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	106,920,970 - 106,958,653 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	106,920,970 - 106,966,543 (-)	Ensembl				GRCr8
mRatBN7.2	6	101,189,714 - 101,227,400 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	101,189,714 - 101,227,406 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	101,344,901 - 101,382,579 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	101,644,086 - 101,681,768 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	101,016,608 - 101,054,310 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	105,224,166 - 105,261,549 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	105,224,166 - 105,261,549 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	113,370,333 - 113,407,716 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	105,352,102 - 105,389,779 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	99,029,620 - 99,067,302 (-)	NCBI		Celera
RGSC_v3.1	6	105,356,721 - 105,393,256 (-)	NCBI
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (EXP,ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

amiodarone (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

clofibrate (EXP)

coumestrol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glafenine (EXP)

L-ethionine (EXP)

methylmercury chloride (ISO)

nefazodone (EXP)

nimesulide (EXP)

omeprazole (EXP)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (EXP,ISO)

propiconazole (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

temozolomide (ISO)

tetraphene (ISO)

thalidomide (ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular distribution of mitochondria (IDA)

negative regulation of activin receptor signaling pathway (ISO)

negative regulation of angiogenesis (ISO,ISS)

negative regulation of endothelial cell migration (ISO,ISS)

negative regulation of endothelial cell proliferation (ISO,ISS)

negative regulation of ERK1 and ERK2 cascade (ISO,ISS)

negative regulation of sprouting angiogenesis (ISO,ISS)

positive regulation of activin receptor signaling pathway (ISO)

positive regulation of protein localization to cell surface (ISO)

positive regulation of receptor internalization (ISO)

protein targeting (ISO)

regulation of endocytosis (ISO)

regulation of Notch signaling pathway (ISO,ISS)

regulation of receptor internalization (ISO)

Rho protein signal transduction (ISO)

Cellular Component

cell surface (ISO)

membrane (IEA)

mitochondrial outer membrane (IDA,IEA,ISO)

mitochondrion (ISO)

Molecular Function

protein binding (IPI,ISO)

type II activin receptor binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The Abl/Arg substrate ArgBP2/nArgBP2 coordinates the function of multiple regulatory mechanisms converging on the actin cytoskeleton.	Cestra G, etal., Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1731-6. Epub 2005 Jan 19.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Recruitment of an alternatively spliced form of synaptojanin 2 to mitochondria by the interaction with the PDZ domain of a mitochondrial outer membrane protein.	Nemoto Y and De Camilli P, EMBO J 1999 Jun 1;18(11):2991-3006.
6.	Identification and characterization of a synaptojanin 2 splice isoform predominantly expressed in nerve terminals.	Nemoto Y, etal., J Biol Chem 2001 Nov 2;276(44):41133-42.
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11882656	PMID:12477932	PMID:16648306	PMID:18845145	PMID:22871113	PMID:24025447

Genomics

Comparative Map Data

Synj2bp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	106,920,970 - 106,958,653 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	106,920,970 - 106,966,543 (-)	Ensembl				GRCr8
mRatBN7.2	6	101,189,714 - 101,227,400 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	101,189,714 - 101,227,406 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	101,344,901 - 101,382,579 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	101,644,086 - 101,681,768 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	101,016,608 - 101,054,310 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	105,224,166 - 105,261,549 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	105,224,166 - 105,261,549 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	113,370,333 - 113,407,716 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	105,352,102 - 105,389,779 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	99,029,620 - 99,067,302 (-)	NCBI		Celera
RGSC_v3.1	6	105,356,721 - 105,393,256 (-)	NCBI
Cytogenetic Map	6	q24	NCBI

SYNJ2BP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	70,366,499 - 70,417,090 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	70,366,499 - 70,417,097 (-)	Ensembl			hg38	GRCh38
GRCh37	14	70,833,216 - 70,883,807 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	69,902,966 - 69,953,560 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	69,908,626 - 69,953,515	NCBI
Celera	14	50,897,314 - 50,948,137 (-)	NCBI		Celera
Cytogenetic Map	14	q24.2	NCBI
HuRef	14	51,001,739 - 51,052,566 (-)	NCBI		HuRef
CHM1_1	14	70,771,326 - 70,821,956 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	64,572,381 - 64,623,200 (-)	NCBI		T2T-CHM13v2.0

Synj2bp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	81,538,968 - 81,579,685 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	81,544,715 - 81,579,685 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	81,492,194 - 81,532,911 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	81,497,941 - 81,532,911 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	82,593,181 - 82,633,894 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	82,416,789 - 82,451,755 (-)	NCBI		MGSCv36	mm8
Celera	12	82,957,743 - 82,999,110 (-)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	37.73	NCBI

Synj2bp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	80,766 - 121,980 (+)	Ensembl
ChiLan1.0	NW_004955466	80,766 - 127,383 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYNJ2BP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	71,489,316 - 71,539,862 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	70,705,829 - 70,756,314 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	50,958,861 - 51,009,395 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	69,829,082 - 69,879,537 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	69,835,548 - 69,879,537 (-)	Ensembl			panPan2	panpan1.1

SYNJ2BP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	44,044,526 - 44,079,002 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	44,044,526 - 44,079,002 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	43,727,903 - 43,762,384 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	44,267,979 - 44,302,474 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	44,263,840 - 44,302,537 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	43,882,482 - 43,916,952 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	43,955,881 - 43,990,355 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	44,316,315 - 44,350,794 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101967553
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	60,681,189 - 60,745,379 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	13,482,975 - 13,510,693 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0 Ensembl	NW_004936495	13,444,726 - 13,471,914 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	13,446,325 - 13,510,495 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNJ2BP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	93,906,182 - 93,974,444 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	93,906,182 - 93,974,336 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	100,228,872 - 100,248,552 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYNJ2BP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	47,612,405 - 47,658,378 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	47,612,975 - 47,629,109 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	35,827,634 - 35,873,728 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Synj2bp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	30,726,177 - 30,775,873 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	30,726,204 - 30,775,166 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Synj2bp
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	95,691,676 - 95,725,912 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Synj2bp
238 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	52
Count of miRNA genes:	49
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000009122
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	86494122	112380234	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	99708426	112483760	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	71278722	116278722	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	64367996	109367996	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	46050607	116278722	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	20859430	113082285	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	86867923	110125012	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	78204640	123204640	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	76937178	121937178	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat

Markers in Region

D6Wox35

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	101,194,395 - 101,194,642 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	105,228,848 - 105,229,094	NCBI	Rnor6.0
Rnor_5.0	6	113,375,015 - 113,375,261	UniSTS	Rnor5.0
RGSC_v3.4	6	105,356,784 - 105,357,030	UniSTS	RGSC3.4
Celera	6	99,034,302 - 99,034,548	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH142239

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	101,194,939 - 101,195,096 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	105,229,392 - 105,229,548	NCBI	Rnor6.0
Rnor_5.0	6	113,375,559 - 113,375,715	UniSTS	Rnor5.0
RGSC_v3.4	6	105,357,328 - 105,357,484	UniSTS	RGSC3.4
Celera	6	99,034,846 - 99,035,002	UniSTS
RH 3.4 Map	6	729.9	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH128763

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	101,191,697 - 101,191,888 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	105,226,150 - 105,226,340	NCBI	Rnor6.0
Rnor_5.0	6	113,372,317 - 113,372,507	UniSTS	Rnor5.0
RGSC_v3.4	6	105,354,086 - 105,354,276	UniSTS	RGSC3.4
Celera	6	99,031,604 - 99,031,794	UniSTS
RH 3.4 Map	6	729.49	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH129534

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	101,192,605 - 101,192,804 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	105,227,058 - 105,227,256	NCBI	Rnor6.0
Rnor_5.0	6	113,373,225 - 113,373,423	UniSTS	Rnor5.0
RGSC_v3.4	6	105,354,994 - 105,355,192	UniSTS	RGSC3.4
Celera	6	99,032,512 - 99,032,710	UniSTS
RH 3.4 Map	6	729.9	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH129934

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	101,194,768 - 101,194,919 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	105,229,221 - 105,229,371	NCBI	Rnor6.0
Rnor_5.0	6	113,375,388 - 113,375,538	UniSTS	Rnor5.0
RGSC_v3.4	6	105,357,157 - 105,357,307	UniSTS	RGSC3.4
Celera	6	99,034,675 - 99,034,825	UniSTS
RH 3.4 Map	6	730.7	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF260258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC126067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000009122 ⟹ ENSRNOP00000009119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	106,920,970 - 106,958,653 (-)	Ensembl
mRatBN7.2 Ensembl	6	101,189,714 - 101,227,400 (-)	Ensembl
Rnor_6.0 Ensembl	6	105,224,166 - 105,261,549 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115470 ⟹ ENSRNOP00000094045

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	106,927,957 - 106,958,768 (-)	Ensembl
mRatBN7.2 Ensembl	6	101,194,724 - 101,227,406 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138579 ⟹ ENSRNOP00000110478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	106,920,970 - 106,966,543 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161344 ⟹ ENSRNOP00000104761

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	106,920,970 - 106,958,684 (-)	Ensembl

RefSeq Acc Id:

NM_022599 ⟹ NP_072121

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	106,920,970 - 106,958,653 (-)	NCBI
mRatBN7.2	6	101,189,714 - 101,227,400 (-)	NCBI
Rnor_6.0	6	105,224,166 - 105,261,549 (-)	NCBI
Rnor_5.0	6	113,370,333 - 113,407,716 (-)	NCBI
RGSC_v3.4	6	105,352,102 - 105,389,779 (-)	RGD
Celera	6	99,029,620 - 99,067,302 (-)	RGD

Sequence:

show sequence

GGGGAGGCGGCACGGAGCTTGATTCACCTTCACCTGCGCCGGGCACCCGCTGACCCCGGGTTTC
CGCCCGGAGAGCAGTCAGATATGAACGGACGGGTGGATTATTTAGTCTCCGAGGAAGAGATCAA
CCTGACCAGAGGACCCTCGGGGCTGGGCTTCAACATCGTCGGTGGGACAGATCAACAGTATGTC
TCCAATGACAGTGGCATCTACGTCAGCCGCATCAAAGAGGATGGGGCTGCGGCCCGGGATGGGC
GGCTCCAGGAGGGTGATAAGATCCTCTCGGTAAATGGCCAAGACCTGAAGAACCTGTTGCACCA
AGATGCCGTAGACCTCTTCCGTAATGCAGGATATGCCGTGTCCCTGAGAGTGCAGCACAGGTTA
CCAGTGCAGAATGGACCTATAGTTCATCGAGGCGACGGAGAGCCGAGTGGAGTTCCTGTAGCTG
TGGTGCTGCTGCCAGTGTTTGCCCTTACCCTGGTAGCAGTTTGGGCCTTCGTGAGATACCGAAA
GCAGCTCTGAGATGCCTGTTGTCTTCCAGTGTGTCCGATGAGCTAACTATCTCTCTCACTCACC
ATCTCGACATCCTCCCCTAGTCTTCCTTCCCACATAGCCAACACATGATTTAAAGTGACTGCTT
ATCACCCGAAACCTTGCTGTTCAAAATCTCCAAGACTTCACATTCTAATGGAAGAGTAAAGAGA
TTATTTGAAGAAAGCTGGGGGTGGGGAGAGCCTTGCTTAGAATAAATGAGAAGTTACATATTTT
ACTAGAACTGCCAATAAAAATTCAGCTATCAGCCAAAGAGGAGAAGCTTGCTCTTCCTGTCTCC
ATGGACGACACCTTTTGCTTAGCTGGTGTGCTTTGAAGGCTAGCTGTGCTATGTGAAAGGAGGA
GCTGATTTTTTAAATACTTTTTCTTGGGAAGTATTTGTGGCCTTTAATTTGTAACTATATACTT
AGATGCCTATATTGGACATAGGCGAATGAATTTTTTTCTTTTCTTAGAAAAGAAAATACATATA
TACACTAACACACACACACACACACACACACACAGCATAAAACTGATGCCTTATGGAGAGTTAA
AGAGGTGAGAAAACTACTGGTTCTTGGATTTCTAGTGGACAAGTTTTGGGAACTAGGGGGTCAT
ATTCCTTTATATATAATCAAAACTCATATTAAAGAATGAGTTCTGGATTGTAAAGAGAACTTAC
TTTTTCCACTTGTCTGTAAGTCTTTGTCCACAAGTTAAAAACATACACAGTCCTAAGGGCTGAT
CATAACTGAAACACTTCAAAAATTATTGGCAGAGAAGGTATAACGGGGATGGAAAAGTTAGCTT
TAAAAGAGAATGCTCAGTCAGTGGCATTAGGAAAATAATGACTGAAGCAATTAGTTGAAAACTG
TAGAACAACTAGTGTTCCAGGGTAGCTACAGTGATGTGGGAAATTGTGGCAAAGCAGTTCTTCT
CAAGTCAATTTGTTTAAAAGACTTTGGGGTGTAAAGATGAGTCCTGACAGTCTCTGAATGACCT
TAGTGACTGTTGTACTATGTGAAAGGATCCATTGGCATGGAGATGAGAAGTAGGAGGGCCAAAT
AAACCATCAAGACAACTGAAAAAAGATCATACCTCAGGGTGGCACTTGAACCCTCAAAGTGCTC
ACCAACTTTCAGTTTCTAGTATCAGGCAAAGCCTAAGGGAAGGGACTGCTTTCCTGGCAGGGTG
GACCCCAAATCAGCCTGCTTCTGATAGAGTTACGATGAGAAGGCCCAAATTGATGTAGGCTTTC
TTTTTGTGTATTTTTCCCAAAGCTATAAGCACTAGTTTTGGTTTTAATAAGGTAATGGACCATT
TTTTCAGAAAAAGGGGAAGGAATAAGGTTTGTTTGTTTATAGAGGGTGCAAGGAAGTTTAGTGA
GCATTTCTGAGGAAAGCCTGAGCACACAGAGTAGATTAACTATGCCAGAGAATAGCCAGGGATA
TTGGGGGGTGGGGGGTAGTGGAGCTGTCCTGTTTATGTAGCATCAAAGTTGGTTTTAGAGTACT
GAGGATAGTTGAACCAAGCCTAATTTTTTTTTTCACTTTAACAAAATAATTTCCGTCTTTTCAA
TAAATTGGCCAGACTATTTTGACCTAAGATTATAAAGAGTTTTCCTGACAACCTAGCAGTCACT
TAACAGATGTCGATTGCACATTAGTTTTGTCAAGACACCTTTATAACAAAGGGAAATGCACACA
CTTCATCCAAAAGGACATTGTGGTTACAGTTAGGAAGAAAACACTTAAGATGGAATTATCCATG
TAAGTGTAAGTTGTTTATATTACAGACAACAAAAGAAAATAGCTCCCAAGCTTTGAGCACTGAA
GATCTCAGAGGAAGGACTCCTTAGGTGCCAATCGTCTAGCAAGCATGCATACATAGGGGACAAG
TTAAGAGTCTTACCGGGTTGAGTAAGAAAAGGAAACTATTGCCATGCGAGACAGAGCACGATGC
AGCAATGTGGAGGATGAGCAGACAGCTAGCATGTTGTAAGGAGCTCAGAACGGGAGAGCCTTCC
TGCAGTGGCATCGGGGGAGAATGCAAAGGAAAGTCTTGAACAGTCCAGTGAGCCTTTGCCTCTG
GATAAACTGTTGATACAGGGAGACATTTGCTTTAAACAGTCTTCACATAACCAAGCCATTCAGT
ACTTCTTGAAACTGACTTCATAACAGGAGTCATTGTAAGTTCCACAGAAAGCAAGACGTATGTA
TTTCAGTTCTTGTCTTGACCAGCAGCACTCCGGAGGCCCAGTGTCCGGTGCCCTCCTTGTATCT
GAAGCAGGGGTAACAGCTCTGCTGTGGGCCTGTTTCCCTCTAGTATTTACCTCAAGGCTTGGAA
ATGTATTTTGAAAGACCTTCAGTCAAACGAAGTAAAGCAAATGTCAAGAAGGATAAACCACTGT
TGTGTGTTGATGTGTGGTGTATTGTGATATAAATAAAAAATATCGTTGAAGTTTTACTTTGTAA
AGATTCTGGTAACACTTGGGTCTCCTTGGGAAAGAAACAACACTTGACCAAAGCATTTAAGTTT
TAGGCAAATTCCATAATATTTCACTCTTAGTTATAAAATTATCATACATGAGATGTTGAGGATC
TATATAGATTATTCAGATTTTATATTCCTTATAGATTGACTCAAATATTCCTTAAAAGATTATA
TATGATGCTCCTATGGCATAAATTGTAATGTTTAATGTTTTGAAAATTGGTTATAGGTATTTTT
TAAGTTCCCATAAAGTGTTTCTTGTATTTGTCATTGTGAATTATATGTAATTCTAATAGATATT
GTTTGCTTTAGTCATTTTTGTCTCCTTTTCCTATAGTTTCCTGTGTGAGTGATTCCATGTAATT
AATTGGACTGTCTAGCCACAGGCAACAAATAGAAGTAGTATTTGTAATTGCAGCCTGTGCCAGG
GACTGTGTTAGACTGATTAGTAACACTATGAATCACCCGAGATCTTAAGTATTGCTATAAAGAG
AAGACTGAAGATGAGAGAGTAAAGTATTTTCCTGGGATTATATAGTTGGTAAAAAAGAATCATG
ATTTAAACTCTGGACTTTGGATAAAAGTATCAGTAATTTTCCTCATTGCTAGCAGTCCTCATGC
AAGGTCTCTGGACTAAAGCGATGTATTACCTGCAAATGCTTGAGTTTCATCCCATACTTATGGC
GTGAGGTGAGTGTGGCAGCCAGCATCTCTGTCCTCCTAGGTAACTGGTTAGTGCTGAACCTCGA
GATTCACCACTGTCAGGAGCTGTCTCTGCTTAGAATCACCTGGACAGCTGGCTGTCAACCCACG
TTAAGTAAGAACATGTGGGACTAGAATTCAGTCAACAATAAAAGCTTTCATCAGGTGGCTAAAA
TGTGCAGACTCTGTTTGTACTGGCATGTTGGCCATCACTCACAGATGCAACTCTAGCCAGAATC
AAGAATGGGGCAGATCCAGAGCCCAGCTCGCTGAGCTTCTGCCCCAGATTTCAGAGGCAGAGTA
AGAAGTGGAACAGTGTTTTCCTCCCAGGTGCTCAGGACAGGCTGGTCAACTTCCAGTCACATAT
GCCATTTAGTAAGTGCTTCGGCCTGTGCAGCCATTAGTAACCAAATCATGGGATAGTGAATCTA
AAATACTCTTGGATAAAATTTGTATTAGAATTAAAAAAAAATGAGGGTCAGAAAGGTGAACTAA
CTCCAACTTAGATGCCCCTCCCCTTTATTTTGGTCTCAAATCTGTTTTAATGTGTCCACAACAT
TAATCAAAAACTGTATTTTTTTTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAG
GCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCAAAACTGTATTTTAAAAATCAGTTCAC
TTTCATCTTTTTTTCCTTGGGTTTTCAGTAAAGACCAGAAGGACTGACAGACAGCTAGAGAGGT
TGTGTAGACATCCAGATGGGGAGAGTGCATTGGACAATCTGAGAAATCTATTCAGGTGCTGCCT
AATTCCATTAGCTTTAAGTTAGATACAAGCTGTTTGTAGTATTTTGGGTTTTATTGTGCAAATA
AACAATAGAGGCCTTTAGTCCCAGCGTTAGGATGCAGAGGCAGAAGAAGGCAGATCTCTGAGAA
GGAAGCCAGAAATGGATCTCTGTCTCCCCCTCCCTTCTCTCCCCTCCCCTCCCTCCCTCTGTGT
GTGAGTATAATCAATAAGGATTTTATCCTACCTACTTTCAATGGAACGTATCTTTTTGCAGATA
CTGTTTTTTTTCTTCATTGATAACTATCAACACTAGTAGAGAAAATACAAAGATAAAATTTAGT
CACTGAGCTGAAATAGCTTAGCATCTGAGAGTGGGTGATCTTTAATGTATCTTTTGAACATCAC
TGAAGAAGTAAAGTGTTTGAGTTCTTAAGCTCTCTCAAAGTAGATTCAGGGTTGACTGTTATCC
TAGGCTAATCCTTCTTTGCTGTTCCTTTTAACTGCAGAACTTTTATTGAGACCAACCCTCACCT
CACAGTGCAGTTATGATTTTTTTAATAAAAGACAATCTTTTAAAGAATTTTGCCCAGTGGGCAT
GAGATTCTGAACTGCCATTAACTCTTGTGTTGATAACTGTATAGAGAATACACAGCACTCGACT
ACCTGATGCACTTAATACAAAGTTTGTCAGAAAGCATTGCTGATGAAAAGTCTAGCATTCTGAA
ATGCCAGTGCCTCTAACTAAATTCCCCTCATCGTTCCCTCATTACACGGGAGAAAGGGAGGGGA
AGAGGACTAGTAAAGGCTTTCAGTGCAGTTTTGTTACTTGTCAGCAGAGTGATTTGCAAAAGAA
CTTCGTAATGTATTGACTAGTCACAGGAAAATGGGATGATCCTCTTCAGTGTTGGCAGGTTTGC
ACGTGAAGACACGGCACTGAGTCCAGTTTTAACGCTGTGTTTCTAATCCTGCTTGAACATGAGT
TTGTTATTACTGGATTCTTGTACACCTTCGAGGCTTTTCAGTTCTTGGAACATTATTTTCGTGA
AGTACCTTATGTTGTTTCCTTTCTGCTCTGATTCTTATGTCCCCTTGCATCCCTGTATGTAAAC
AGTCACTGTTTCACAGGTTAGATGCCTGAGAGCTACTTGGAAATCAAGTAAAAATCAATCACAT
TTGCTAGGAATTATCATCACCAATGCATCAGTGATCCTGTTTCAAGCTCACTGATACCAGTGTG
TCCAGATTTGCCTCTTGAACTATGACATTCAATAAAGACCTGTTGAACTTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_072121	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF70306	(Get FASTA)	NCBI Sequence Viewer
	AAI26068	(Get FASTA)	NCBI Sequence Viewer
	EDL81421	(Get FASTA)	NCBI Sequence Viewer
	EDL81422	(Get FASTA)	NCBI Sequence Viewer
	EDL81423	(Get FASTA)	NCBI Sequence Viewer
	EDL81424	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009119
	ENSRNOP00000009119.5
GenBank Protein	Q9WVJ4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_072121 ⟸ NM_022599
- UniProtKB:	A0JN00 (UniProtKB/Swiss-Prot), Q9WVJ4 (UniProtKB/Swiss-Prot), A6JDM8 (UniProtKB/TrEMBL), A0A8I6AL95 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNGRVDYLVSEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKEDGAAARDGRLQEGDK ILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLPVQNGPIVHRGDGEPSGVPVAVVLLPVF ALTLVAVWAFVRYRKQL hide sequence

Ensembl Acc Id:

ENSRNOP00000009119 ⟸ ENSRNOT00000009122

Ensembl Acc Id:

ENSRNOP00000094045 ⟸ ENSRNOT00000115470

Ensembl Acc Id:

ENSRNOP00000104761 ⟸ ENSRNOT00000161344

Ensembl Acc Id:

ENSRNOP00000110478 ⟸ ENSRNOT00000138579

Protein Domains

PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9WVJ4-F1-model_v2	AlphaFold	Q9WVJ4	1-145	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694706

Promoter ID:

EPDNEW_R5231

Type:

initiation region

Name:

Synj2bp_1

Description:

synaptojanin 2 binding protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	105,261,563 - 105,261,623	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:69400	AgrOrtholog
BIND	144351
BioCyc Gene	G2FUF-36891	BioCyc
Ensembl Genes	ENSRNOG00000006399	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000009122	ENTREZGENE
	ENSRNOT00000009122.7	UniProtKB/Swiss-Prot
Gene3D-CATH	2.30.42.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7323715	IMAGE-MGC_LOAD
InterPro	PDZ	UniProtKB/Swiss-Prot
	PDZ_sf	UniProtKB/Swiss-Prot
	Synaptic_Scaffolding_LAP-MAGUK	UniProtKB/Swiss-Prot
KEGG Report	rno:64531	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156495	IMAGE-MGC_LOAD
NCBI Gene	64531	ENTREZGENE
PANTHER	DISCS LARGE	UniProtKB/Swiss-Prot
	DISKS LARGE 1 TUMOR SUPPRESSOR PROTEIN	UniProtKB/Swiss-Prot
Pfam	PDZ	UniProtKB/Swiss-Prot
PhenoGen	Synj2bp	PhenoGen
PROSITE	PDZ	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000006399	RatGTEx
SMART	PDZ	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50156	UniProtKB/Swiss-Prot
UniProt	A0A8I6AL95	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LIS4_RAT	UniProtKB/TrEMBL
	A0ABK0LXZ9_RAT	UniProtKB/TrEMBL
	A0JN00	ENTREZGENE
	A6JDM7_RAT	UniProtKB/TrEMBL
	A6JDM8	ENTREZGENE, UniProtKB/TrEMBL
	A6JDM9_RAT	UniProtKB/TrEMBL
	A6JDN0_RAT	UniProtKB/TrEMBL
	Q9WVJ4	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A0JN00	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Synj2bp	synaptojanin 2 binding protein			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_mutations_overexpression	overexpression causes perinuclear clustering of mitochondria	69391

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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