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Gene: Pde1c (phosphodiesterase 1C) Rattus norvegicus

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Symbol:

Pde1c

Name:

phosphodiesterase 1C

RGD ID:

68332

Description:

Enables cAMP binding activity; calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity; and calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity. Involved in negative regulation of insulin secretion involved in cellular response to glucose stimulus. Acts upstream of or within response to calcium ion. Located in neuronal cell body. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 74. Orthologous to human PDE1C (phosphodiesterase 1C); PARTICIPATES IN protein kinase A (PKA) signaling pathway; calcium/calcium-mediated signaling pathway; purine metabolic pathway; INTERACTS WITH alpha-Zearalanol; ammonium chloride; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

3',5'-cyclic-AMP phosphodiesterase; 3',5'-cyclic-GMP phosphodiesterase; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C; cam-PDE 1C; cyclic nucleotide phosphodiesterase 1 C; dual specificity Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C; phosphodiesterase 1C calmodulin-dependent (70kD)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDE1C (phosphodiesterase 1C)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDE1C (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDE1C (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDE1C (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDE1C (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pde1c (phosphodiesterase 1C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	HAS3 (hyaluronan synthase 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	PDE1C (phosphodiesterase 1C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pde1c (phosphodiesterase 1C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pde1cb (phosphodiesterase 1C, calmodulin-dependent b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pde1cb (phosphodiesterase 1C, calmodulin-dependent b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	pde1ca (phosphodiesterase 1C, calmodulin-dependent a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PDE2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PDE2	Alliance	DIOPT (Ensembl Compara\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pde1c	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pde1c	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pde-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pde1c	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pde1c	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	86,629,074 - 87,108,147 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	86,626,282 - 87,193,259 (-)	Ensembl				GRCr8
mRatBN7.2	4	85,300,858 - 85,777,948 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	85,300,858 - 85,863,219 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	90,536,092 - 91,012,558 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	86,311,496 - 86,787,976 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	84,708,405 - 85,182,236 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	86,359,762 - 86,925,044 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	86,359,820 - 86,630,543 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	151,012,195 - 151,485,775 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	84,936,642 - 85,448,339 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	80,156,679 - 80,622,825 (-)	NCBI		Celera
RGSC_v3.1	4	85,180,112 - 85,587,782 (-)	NCBI
Cytogenetic Map	4	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant nonsyndromic deafness (ISO)

autosomal dominant nonsyndromic deafness 74 (ISO)

prostate cancer (ISO)

substance-related disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cantharidin (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP,ISO)

cisplatin (ISO)

clothianidin (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dextran sulfate (ISO)

diazinon (EXP)

Didecyldimethylammonium (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

folic acid (ISO)

fosinopril (EXP)

genistein (ISO)

glycidol (EXP)

levonorgestrel (ISO)

lipopolysaccharide (ISO)

Mesaconitine (EXP)

methapyrilene (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

Moniliformin (ISO)

nickel atom (ISO)

okadaic acid (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (EXP)

progesterone (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

temozolomide (ISO)

testosterone (EXP)

testosterone enanthate (EXP)

testosterone undecanoate (ISO)

thiram (ISO)

titanium dioxide (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cAMP/PKA signal transduction (IBA)

negative regulation of insulin secretion involved in cellular response to glucose stimulus (IMP)

response to calcium ion (IDA)

sensory perception of smell (IEA,ISO)

signal transduction (IEA)

Cellular Component

cilium (ISO)

lysosome (IEA,ISO,ISS)

neuronal cell body (IBA,IDA)

Molecular Function

3',5'-cyclic-AMP phosphodiesterase activity (IEA,ISO)

3',5'-cyclic-GMP phosphodiesterase activity (IEA,ISO)

3',5'-cyclic-nucleotide phosphodiesterase activity (IEA)

calmodulin binding (IEA)

calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity (IBA,IDA)

calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity (IBA,IDA,IEA,ISO)

cAMP binding (IDA)

hydrolase activity (IEA)

metal ion binding (IEA)

phosphoric diester hydrolase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

calcium/calcium-mediated signaling pathway (IEA)

protein kinase A (PKA) signaling pathway (ISO)

purine metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Biochemistry and physiology of cyclic nucleotide phosphodiesterases: essential components in cyclic nucleotide signaling.	Conti M and Beavo J, Annu Rev Biochem. 2007;76:481-511.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Gene expression and protein localization of calmodulin-dependent phosphodiesterase in adult rat retina.	Santone R, etal., J Neurosci Res. 2006 Oct;84(5):1020-6.
10.	Phosphodiesterase 3 and 4 comprise the major cAMP metabolizing enzymes responsible for insulin secretion in INS-1 (832/13) cells and rat islets.	Waddleton D, etal., Biochem Pharmacol. 2008 Oct 1;76(7):884-93. Epub 2008 Jul 26.
11.	Molecular cloning and characterization of a calmodulin-dependent phosphodiesterase enriched in olfactory sensory neurons.	Yan C, etal., Proc Natl Acad Sci U S A 1995 Oct 10;92(21):9677-81.

Additional References at PubMed

PMID:19305400	PMID:21148428	PMID:25608528	PMID:35538034

Genomics

Comparative Map Data

Pde1c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	86,629,074 - 87,108,147 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	86,626,282 - 87,193,259 (-)	Ensembl				GRCr8
mRatBN7.2	4	85,300,858 - 85,777,948 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	85,300,858 - 85,863,219 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	90,536,092 - 91,012,558 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	86,311,496 - 86,787,976 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	84,708,405 - 85,182,236 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	86,359,762 - 86,925,044 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	86,359,820 - 86,630,543 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	151,012,195 - 151,485,775 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	84,936,642 - 85,448,339 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	80,156,679 - 80,622,825 (-)	NCBI		Celera
RGSC_v3.1	4	85,180,112 - 85,587,782 (-)	NCBI
Cytogenetic Map	4	q24	NCBI

PDE1C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	31,616,777 - 32,428,224 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	31,751,179 - 32,428,131 (-)	Ensembl			hg38	GRCh38
GRCh37	7	31,790,793 - 32,467,836 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	31,795,772 - 32,077,516 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	31,602,486 - 31,884,231	NCBI
Celera	7	31,779,557 - 32,325,238 (-)	NCBI		Celera
Cytogenetic Map	7	p14.3	NCBI
HuRef	7	31,673,350 - 32,219,567 (-)	NCBI		HuRef
CHM1_1	7	31,792,207 - 32,337,961 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	31,754,475 - 32,567,499 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	31,840,922 - 32,386,609 (-)	NCBI

Pde1c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	56,046,783 - 56,629,590 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	56,046,789 - 56,629,472 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	56,069,798 - 56,652,510 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	56,069,804 - 56,652,487 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	56,019,798 - 56,319,628 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	56,011,359 - 56,292,097 (-)	NCBI		MGSCv36	mm8
Celera	6	60,236,120 - 60,238,326 (-)	NCBI		Celera
Celera	6	56,847,453 - 57,126,888 (-)	NCBI		Celera
Cytogenetic Map	6	B3	NCBI
cM Map	6	27.65	NCBI

Pde1c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	32,792,649 - 33,257,291 (-)	Ensembl
ChiLan1.0	NW_004955410	32,790,720 - 33,257,760 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDE1C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	36,436,114 - 37,235,708 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	84,760,632 - 85,560,321 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	32,225,293 - 33,037,627 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	32,477,361 - 33,030,078 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	32,343,701 - 33,029,405 (-)	Ensembl			panPan2	panpan1.1

PDE1C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	44,250,612 - 44,543,818 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	44,145,534 - 44,644,937 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	43,683,659 - 44,165,857 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	44,194,159 - 44,675,717 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	44,193,155 - 44,675,842 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	44,315,468 - 44,607,684 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	43,982,193 - 44,460,807 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	44,346,723 - 44,834,997 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pde1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	88,688,701 - 89,286,505 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	7,900,432 - 8,393,631 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	7,900,432 - 8,499,300 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDE1C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	40,820,644 - 41,409,087 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	40,818,316 - 41,410,555 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PDE1C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	26,094,604 - 26,712,127 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	26,501,264 - 26,598,053 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	78,073,957 - 78,643,089 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pde1c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624783	1,027,548 - 1,139,231 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624783	1,025,606 - 1,708,803 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pde1c
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	84,886,516 - 84,978,783 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pde1c
5013 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	90
Count of miRNA genes:	81
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000017531
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
1549843	Bw53	Body weight QTL 53		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	59753119	104753119	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1357342	Bw40	Body weight QTL 40		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
631556	Bp135	Blood pressure QTL 135		0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	80212111	119233320	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	58817672	103817672	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
70167	Bw22	Body weight QTL 22	3.1		body mass (VT:0001259)	body weight (CMO:0000012)	4	74233320	119233320	Rat
1549839	Bw52	Body weight QTL 52		0.0001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	71647492	116647492	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	75939858	140508796	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	65060960	127749483	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
61364	Iddm2	Insulin dependent diabetes mellitus QTL 2			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	80216705	104243248	Rat
2317588	Eae27	Experimental allergic encephalomyelitis QTL 27			nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	69036742	114036742	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	57613242	102613242	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	57613242	102613242	Rat
6478684	Anxrr30	Anxiety related response QTL 30		0.00087	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	57613242	102613242	Rat
2306794	Ean2	Experimental allergic neuritis QTL 2	6.4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	4	82790777	97183061	Rat
2306547	Iddm38	Insulin dependent diabetes mellitus QTL 38			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	68353567	113353567	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
2306545	Iddm39	Insulin dependent diabetes mellitus QTL 39			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	78687630	123687630	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
6478772	Anxrr49	Anxiety related response QTL 49		0.15488	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	74169813	134199155	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	86058928	131411333	Rat
2312569	Pur19	Proteinuria QTL 19	3.4	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	4	59836842	104836842	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	75939858	140508796	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
634344	Hcar7	Hepatocarcinoma resistance QTL 7	7.8		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	4	61041057	94638356	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	84349032	129349032	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
631651	Bp124	Blood pressure QTL 124	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	64209744	109209744	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63245026	129846354	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	57664252	127749483	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	82336765	127336765	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	58079875	92690793	Rat
6478743	Anxrr40	Anxiety related response QTL 40		0.83076	defecation behavior trait (VT:0010462)	defecation rate (CMO:0000998)	4	64084079	109084079	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	86583980	131583980	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	63224393	108224393	Rat
7394826	Bw126	Body weight QTL 126		0.002	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	63900458	88813920	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat

Markers in Region

D4Rat34

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	86,709,649 - 86,709,840 (+)	Marker Load Pipeline
mRatBN7.2	4	85,379,421 - 85,379,614 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,438,317 - 86,438,507	NCBI	Rnor6.0
Rnor_5.0	4	151,090,671 - 151,090,861	UniSTS	Rnor5.0
RGSC_v3.4	4	85,014,031 - 85,014,222	RGD	RGSC3.4
RGSC_v3.4	4	85,014,032 - 85,014,222	UniSTS	RGSC3.4
Celera	4	80,234,809 - 80,234,999	UniSTS
RGSC_v3.1	4	85,257,503 - 85,257,693	RGD
RH 3.4 Map	4	533.1	UniSTS
RH 3.4 Map	4	533.1	RGD
SHRSP x BN Map	4	43.1	UniSTS
SHRSP x BN Map	4	43.1	RGD
FHH x ACI Map	4	53.55	RGD
Cytogenetic Map	4	q24	UniSTS

D4Got260

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,478,419 - 85,478,509 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,536,950 - 86,537,039	NCBI	Rnor6.0
Rnor_5.0	4	151,189,304 - 151,189,393	UniSTS	Rnor5.0
RGSC_v3.4	4	85,140,162 - 85,140,251	UniSTS	RGSC3.4
Celera	4	80,333,729 - 80,333,818	UniSTS
Cytogenetic Map	4	q24	UniSTS

BF410175

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,334,574 - 85,334,686 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,393,783 - 86,393,894	NCBI	Rnor6.0
Rnor_5.0	4	151,046,137 - 151,046,248	UniSTS	Rnor5.0
RGSC_v3.4	4	84,969,981 - 84,970,092	UniSTS	RGSC3.4
Celera	4	80,190,079 - 80,190,190	UniSTS
RH 3.4 Map	4	536.8	UniSTS
Cytogenetic Map	4	q24	UniSTS

RH137601

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,330,833 - 85,330,978 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,390,042 - 86,390,186	NCBI	Rnor6.0
Rnor_5.0	4	151,042,396 - 151,042,540	UniSTS	Rnor5.0
RGSC_v3.4	4	84,966,240 - 84,966,384	UniSTS	RGSC3.4
Celera	4	80,186,338 - 80,186,482	UniSTS
RH 3.4 Map	4	538.82	UniSTS
Cytogenetic Map	4	q24	UniSTS

BF401579

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	85,310,840 - 85,310,991 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	86,369,792 - 86,369,942	NCBI	Rnor6.0
Rnor_5.0	4	151,022,146 - 151,022,296	UniSTS	Rnor5.0
RGSC_v3.4	4	84,945,870 - 84,946,020	UniSTS	RGSC3.4
Celera	4	80,166,345 - 80,166,495	UniSTS
RH 3.4 Map	4	534.4	UniSTS
Cytogenetic Map	4	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	12	67	157	62	61	30	68	30	6	301	168	11	136	81	91	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108434	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108435	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_592091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF328797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF328798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF328799	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF328800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF329856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L41045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017531 ⟹ ENSRNOP00000017531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,631,093 - 86,902,496 (-)	Ensembl
mRatBN7.2 Ensembl	4	85,300,858 - 85,572,273 (-)	Ensembl
Rnor_6.0 Ensembl	4	86,359,820 - 86,466,797 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081244 ⟹ ENSRNOP00000075405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,357,946 - 85,572,856 (-)	Ensembl
Rnor_6.0 Ensembl	4	86,396,215 - 86,630,543 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097934 ⟹ ENSRNOP00000084095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,301,353 - 85,579,773 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098034 ⟹ ENSRNOP00000077659

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,666,430 - 86,902,297 (-)	Ensembl
mRatBN7.2 Ensembl	4	85,336,544 - 85,572,081 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098186 ⟹ ENSRNOP00000096395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,631,093 - 87,107,992 (-)	Ensembl
mRatBN7.2 Ensembl	4	85,300,858 - 85,778,022 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102583 ⟹ ENSRNOP00000095937

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,626,282 - 86,902,496 (-)	Ensembl
mRatBN7.2 Ensembl	4	85,301,353 - 85,572,273 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105428 ⟹ ENSRNOP00000078829

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,631,093 - 87,193,259 (-)	Ensembl
mRatBN7.2 Ensembl	4	85,300,858 - 85,863,219 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114533 ⟹ ENSRNOP00000078259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	85,336,544 - 85,579,773 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118567 ⟹ ENSRNOP00000089783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,666,430 - 87,107,992 (-)	Ensembl
mRatBN7.2 Ensembl	4	85,336,544 - 85,778,022 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121103 ⟹ ENSRNOP00000110688

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,666,430 - 87,193,259 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000146532 ⟹ ENSRNOP00000099233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,639,183 - 87,107,992 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000152371 ⟹ ENSRNOP00000105005

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,666,430 - 86,909,989 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167670 ⟹ ENSRNOP00000099194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	86,639,424 - 86,902,496 (-)	Ensembl

RefSeq Acc Id:

NM_031078 ⟹ NP_112340

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,631,093 - 87,108,134 (-)	NCBI
mRatBN7.2	4	85,300,858 - 85,777,936 (-)	NCBI
Rnor_6.0	4	86,359,820 - 86,833,450 (-)	NCBI
Rnor_5.0	4	151,012,195 - 151,485,775 (-)	NCBI
RGSC_v3.4	4	84,936,642 - 85,448,339 (-)	RGD
Celera	4	80,156,679 - 80,622,825 (-)	RGD

Sequence:

show sequence

AACACACCTAGAAGAAGCACGACTTCAGTCCCCGCTATTCCCTCGGGGTCCCCCAACCTCCTCC
AGCCTCCAGAGAGCGGAGCGCGAAGGGGCGCGGCAGCCCGGGCCAGCCCACAGCTACACATAGC
CTTGTCAGTCCCCCTGCCGTCGCAGCTGCAGCGGGCTCGGGATGGGGCAGTGGCAGGGGCGCAG
GGGCTTCACTCGGAGCCTTGGTTATTAGCTCCCAGGTCTGGGTGCCTGCAGCCGGCGTGAGCAG
CTTGTACCTAGCGCGGGTCTGCAGTGACAGTGCAGCGGAGGGAGGCTGGGCGCGGGCTCAAGCC
AGGACCCGGGACACACGAGTCATGACGGACACCAGCCACAAGAAGGAGGGCTTCAAGAAATGTA
GGAGCGCCACTTTCAGCATCGACGGGTACAGCTTCACCATCGTTGCAAATGAAGCAGGAGATAA
GAATGCCAGACCCCTTGCACGCTTCTCCCGATCTAAGTCACAGAACTGTCTGTGGAACTCCCTC
ATTGATGGCCTCACTGGGAATGTTAAGGAGAAGCCACGGCCAACAATTGTCCAGGACACCCGAC
CCCCAGAAGAAATTCTGGCAGATGAATTGCCACAACTGGATAGCCCAGAAGCTTTGGTGAAGAC
ATCCTTCAGGTTACGGTCTTTGGTCAAGCAATTAGAGCGAGGAGAGGCCTCTGTGGTAGATCTT
AAGAAGAATCTGGAATATGCAGCCACAGTGCTTGAGTCTGTATATATTGATGAAACAAGGCGCC
TGCTGGATACAGAGGATGAACTTAGTGACATTCAGTCAGATGCTGTGCCTTCTGAAGTTCGGGA
TTGGCTGGCCTCCACCTTCACTCGGCAGATGGGGATGATGCTTAGGAGAAGCGATGAGAAGCCC
AGGTTCAAGAGCATTGTCCATGCAGTGCAAGCTGGGATATTTGTGGAGAGAATGTATAGACGGA
CATCAAACATGGTTGGGTTGAGCTATCCACCGGCTGTAATCGATGCACTGAAGGATGTGGACAC
ATGGTCCTTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCTTTGAAGTTCATTTTC
TATGAATTACTCACACGTTATGACTTGATCAGCCGTTTTAAGATACCCATTTCTGCACTTGTCT
CATTTGTGGAGGCCCTTGAAGTTGGTTACAGCAAGCACAAAAATCCTTACCATAACCTGATGCA
TGCCGCCGATGTCACACAGACTGTGCATTACCTCCTTTATAAGACGGGAGTAGCAAACTGGCTG
ACGGAGCTGGAGATCTTTGCAATAATCTTCTCGGCTGCCATCCATGACTATGAACATACTGGAA
CTACCAACAATTTCCACATTCAGACTCGGTCGGATCCAGCTATCCTGTACAATGACAGATCTGT
ACTGGAGAACCACCACTTGAGTGCAGCCTACCGTCTTCTCCAGGAAGATGAAGAGATGAATATT
CTGGTCAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTAATCGAGATGGTAATGG
CCACAGATATGTCCTGTCATTTCCAACAAATCAAAGCCATGAAGACAGCCCTGCAGCAACCAGA
AGCAATTGAAAAGCCGAAAGCCTTATCCCTCATGCTGCACACAGCAGACATCAGTCATCCTGCG
AAAGCGTGGGACTTGCACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGGGTG
ACAGAGAAGCTGAGCTGGGGCTGCCATTTTCTCCTCTGTGTGACCGAAAGTCAACCATGGTTGC
TCAGTCACAAGTGGGTTTTATTGACTTCATTGTGGAACCTACCTTCACTGTGCTCACGGATATG
ACTGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCCCAGACTGGCGGGACAGGCCAGAGGC
GATCAAGTTTGAACAGCATCAACTCATCCGATGCAAAGCGATCAGGTGTCAAGAGTTCTGGGTC
AGAAGGAAGTGCTCCCATCAACAATTCTGTCATCCCTGTTGACTACAAGAGTTTTAAAGCCACT
TGGACCGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAGCCAAGGTTCCCAAAGAAGAGAAAG
CCAAGAAGGAAGCTGAAGAGAAGGCTCGCCTAGCTGCTGAGGAAAAGCAAAAGGAAATGGAAGC
CAAAAGCCAAGCTGAACAAGGCACAACCAGCAAAGCTGAAAAAAAGACATCAGGAGAAACAAAA
GGTCAAGTCAACGGAACACGCACAAGCAAGGGTGACAACCCTCGTGGGAAGAACTCCAAAGGCG
ACAAGGCAGGCGAAAAGCAGCAGAATGGTGACTTGAAAGATGGTAAAAATAAGGCAGACAAGAA
GGATCACTCCAACACCGGAAATGAGTCAAAGAAAGCAGATGGTACCAAGAAGCGTTCTCATGGC
TCACCTGCTCCAAGCACTAGTTCCACAAGTCGCCTTACCTTGCCAGTCATCAAGCCTCCTTTGC
GTCACTTTAAGCGTCCTGCTTATGCATCTAGTTCCTACGCACCTTCCGTTCCAAAGAAAACTGA
TGATCATCCCGTAAGGTACAAGATGCTGGATCAGCGGATCAAGATAAAAAAGATCCAGAACATC
TCTCATCACTGGAACAAAAAGTAGGGCAAGTTTAAGAACTGAGGGAGTGGGGGAGGGCCGACCG
ACCTGCCTGCCTACCTCTCAGCACCTACTACACACACCAGGACACACCCCCGAAGTCATGCAGC
TGGCACTACTGTGGCTGACCCTGAGAGTCAAAGTGAAATTTGCCTGAGATCCCTCTTGGTCATT
TTGTTATAGATGCACCAGTCACTACATTTGGAGTCAATCAAGACTCCAGCAAGAAGCTAGTAAA
TGGTAGACTTATTTGATTTTACTTTGTAGGCCTTTAAAAGTCTTAAGTTGCAATCAAATTAAAA
ATGATATATCTTATCCTAAAAAATAAAATTCTTCCCACTGCCCTGTTTTCATCCCCAAGAGATG
ATTTACCTTTACATGAACACTGCCTTAAAACTGTCAGGGGTACGAAATGTACTTTTAAAAATAA
CTTTTCCAATTAAAATGATGTTATTTTGTGAAATTAAAATATAAATATACCATTTTTTCTTTCA
TTTTCCCTTCTTCCAAACCTTTACATATACATTTGTTCTCTCTCAAAAGC

hide sequence

RefSeq Acc Id:

XM_008762922 ⟹ XP_008761144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,629,074 - 86,903,087 (-)	NCBI
mRatBN7.2	4	85,300,869 - 85,572,854 (-)	NCBI
Rnor_6.0	4	86,359,766 - 86,630,559 (-)	NCBI

Sequence:

show sequence

GAGAGAGAGAGAGAGAGAGAACACGAATCAATCCTATTAGTAAGAAAACACAAGGGCTTTGTGC
TGGGAAGCTCCAGACTTCCCTTCCTTGGGGCGAGGAGCCCTGTTCTTTATGCAGTGCGGGCAGC
CATCATAGCAGGGCATAGGGCTGGGTGGCCAAGGGCTGCCTGCGGGGGCAGGTGTGGAGCTCCT
GCCCTGCTGACAGTGTTGAACCCTCCTTCAGCACCCGGGGTGCCAGCCCTGTCACTAGCCCCAC
GCTGACAAAAGACTTTTCTCACTTGTCAGTTCTTGCTTATCAGCAGGGCTTGCTGTTCTCCTTT
TGCCTCTAAATCCTCCGGGGACCGCAGGTAGCTTCCGTGGCTTCGTTTAAAGGAAAAAAGAACA
GGAACAGACTCCGGGTCCTACGCACAGTCCTTATCCCGGTCCCTGGCAGTAGTGAGCATCATGG
CTGGTTTCCGCAGCTGCCTCCAGCGCGCACCTGGGACCGGAGTCCTCTGTGATCCTAGCAGGCT
CTGAGCCATCTCTGGGGACGCTTGCAGGGGAAGTAACAAAGTGACTGAAAGACTCACTGGGCTG
GACCCAGCAAAGAGAGGTGGCTGGGCAGGGACTACACAAACTCTCTCCACCTCACCCCCAGTGA
GAACCTGCAGCTATGGAGTCTCCAACAAAGGAAATTGAAGAATTCGAGAGCAACTCTCTGAAAC
ACCTGCAACCCGAGCAGATCGAAAAAATCTGGCTTCGGCTCCGTGGGCTGAGGAAATATAAGAA
AACGTCCCAGAGGTTACGGTCTTTGGTCAAGCAATTAGAGCGAGGAGAGGCCTCTGTGGTAGAT
CTTAAGAAGAATCTGGAATATGCAGCCACAGTGCTTGAGTCTGTATATATTGATGAAACAAGGC
GCCTGCTGGATACAGAGGATGAACTTAGTGACATTCAGTCAGATGCTGTGCCTTCTGAAGTTCG
GGATTGGCTGGCCTCCACCTTCACTCGGCAGATGGGGATGATGCTTAGGAGAAGCGATGAGAAG
CCCAGGTTCAAGAGCATTGTCCATGCAGTGCAAGCTGGGATATTTGTGGAGAGAATGTATAGAC
GGACATCAAACATGGTTGGGTTGAGCTATCCACCGGCTGTAATCGATGCACTGAAGGATGTGGA
CACATGGTCCTTCGATGTCTTTTCCCTCAATGAGGCCAGTGGAGATCATGCTTTGAAGTTCATT
TTCTATGAATTACTCACACGTTATGACTTGATCAGCCGTTTTAAGATACCCATTTCTGCACTTG
TCTCATTTGTGGAGGCCCTTGAAGTTGGTTACAGCAAGCACAAAAATCCTTACCATAACCTGAT
GCATGCCGCCGATGTCACACAGACTGTGCATTACCTCCTTTATAAGACGGGAGTAGCAAACTGG
CTGACGGAGCTGGAGATCTTTGCAATAATCTTCTCGGCTGCCATCCATGACTATGAACATACTG
GAACTACCAACAATTTCCACATTCAGACTCGGTCGGATCCAGCTATCCTGTACAATGACAGATC
TGTACTGGAGAACCACCACTTGAGTGCAGCCTACCGTCTTCTCCAGGAAGATGAAGAGATGAAT
ATTCTGGTCAACCTCTCAAAGGATGACTGGAGGGAGTTTCGAACTTTGGTAATCGAGATGGTAA
TGGCCACAGATATGTCCTGTCATTTCCAACAAATCAAAGCCATGAAGACAGCCCTGCAGCAACC
AGAAGCAATTGAAAAGCCGAAAGCCTTATCCCTCATGCTGCACACAGCAGACATCAGTCATCCT
GCGAAAGCGTGGGACTTGCACCACCGCTGGACCATGTCTCTCCTGGAGGAGTTCTTTAGACAGG
GTGACAGAGAAGCTGAGCTGGGGCTGCCATTTTCTCCTCTGTGTGACCGAAAGTCAACCATGGT
TGCTCAGTCACAAGTGGGTTTTATTGACTTCATTGTGGAACCTACCTTCACTGTGCTCACGGAT
ATGACTGAGAAGATTGTGAGTCCATTAATCGATGAAACCTCCCAGACTGGCGGGACAGGCCAGA
GGCGATCAAGTTTGAACAGCATCAACTCATCCGATGCAAAGCGATCAGGTGTCAAGAGTTCTGG
GTCAGAAGGAAGTGCTCCCATCAACAATTCTGTCATCCCTGTTGACTACAAGAGTTTTAAAGCC
ACTTGGACCGAGGTGGTGCAGATCAATCGGGAGCGGTGGCGAGCCAAGGTTCCCAAAGAAGAGA
AAGCCAAGAAGGAAGCTGAAGAGAAGGCTCGCCTAGCTGCTGAGGAAAAGCAAAAGGAAATGGA
AGCCAAAAGCCAAGCTGAACAAGGCACAACCAGCAAAGCTGAAAAAAAGACATCAGGAGAAACA
AAAGGTCAAGTCAACGGAACACGCACAAGCAAGGGTGACAACCCTCGTGGGAAGAACTCCAAAG
GCGACAAGGCAGGCGAAAAGCAGCAGAATGGTGACTTGAAAGATGGTAAAAATAAGGCAGACAA
GAAGGATCACTCCAACACCGGAAATGAGTCAAAGAAAGCAGATGGTACCAAGAAGCGTTCTCAT
GGCTCACCTGCTCCAAGCACTAGTTCCACAAGTCGCCTTACCTTGCCAGTCATCAAGCCTCCTT
TGCGTCACTTTAAGCGTCCTGCTTATGCATCTAGTTCCTACGCACCTTCCGTTCCAAAGAAAAC
TGATGATCATCCCGTAAGGTACAAGATGCTGGATCAGCGGATCAAGATGAAAAAGATCCAGAAC
ATCTCTCATCACTGGAACAAAAAGTAGGGCAAGTTTAAGAACTGAGGGAGTGGGGGAGGGCCGA
CCGACCTGCCTGCCTACCTCTCAGCACCTACTACACACACCAGGACACACCCCCGAAGTCATGC
AGCTGGCACTACTGTGGCTGACCCTGAGAGTCAAAGTGAAATTTGCCTGAGATTCCTCTTGGTC
ATTTTGTTATAGATGCACCAGTCACTACATTTGGAGTCAATCAAGACTCCAGCAAGAAGCTAGT
AAATGGTAGACTTATTTGATTTTACTTTGTAGGCCTTTAAAAGTCTTAAGTTGCAATCAAATTA
AAAATGATATATCTTATCCTAAAAAATAAAATTCTTCCCACTGCCCTGTTTTCATCCCCAAGAG
ATGATTTACCTTTACATGAACACTGCCTTAAAACTGTCAGGGGTACGAAATGTACTTTTAAAAA
TAACTTTTCCAATTAAAATGATGTTATTTTGTGAAATTAAAATATAAATATACCATTTTTTCTT
TCATTTTCCCTTCTTCCAAACCTTTACATATACATTTGTTCTCTCTCAAAAGCATGGCTTCTTT
TGTTTTATTGTATACTATATATATATGTATATGTATATATATA

hide sequence

RefSeq Acc Id:

XM_039108432 ⟹ XP_038964360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,635,802 - 87,108,147 (-)	NCBI
mRatBN7.2	4	85,303,579 - 85,777,948 (-)	NCBI

RefSeq Acc Id:

XM_039108433 ⟹ XP_038964361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,631,665 - 87,108,147 (-)	NCBI
mRatBN7.2	4	85,300,868 - 85,777,948 (-)	NCBI

RefSeq Acc Id:

XM_039108434 ⟹ XP_038964362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,629,074 - 86,903,087 (-)	NCBI
mRatBN7.2	4	85,300,869 - 85,572,854 (-)	NCBI

RefSeq Acc Id:

XM_039108435 ⟹ XP_038964363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,660,981 - 87,108,147 (-)	NCBI
mRatBN7.2	4	85,330,758 - 85,777,947 (-)	NCBI

RefSeq Acc Id:

XM_063286751 ⟹ XP_063142821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,635,802 - 86,903,086 (-)	NCBI

RefSeq Acc Id:

XM_063286752 ⟹ XP_063142822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,660,981 - 86,903,085 (-)	NCBI

RefSeq Acc Id:

XM_063286753 ⟹ XP_063142823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	86,660,981 - 86,903,100 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_112340	(Get FASTA)	NCBI Sequence Viewer
	XP_008761144	(Get FASTA)	NCBI Sequence Viewer
	XP_038964360	(Get FASTA)	NCBI Sequence Viewer
	XP_038964361	(Get FASTA)	NCBI Sequence Viewer
	XP_038964362	(Get FASTA)	NCBI Sequence Viewer
	XP_038964363	(Get FASTA)	NCBI Sequence Viewer
	XP_063142821	(Get FASTA)	NCBI Sequence Viewer
	XP_063142822	(Get FASTA)	NCBI Sequence Viewer
	XP_063142823	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB00868	(Get FASTA)	NCBI Sequence Viewer
	AAG61119	(Get FASTA)	NCBI Sequence Viewer
	AAK32136	(Get FASTA)	NCBI Sequence Viewer
	AAK32137	(Get FASTA)	NCBI Sequence Viewer
	AAK32138	(Get FASTA)	NCBI Sequence Viewer
	AAK32139	(Get FASTA)	NCBI Sequence Viewer
	EDL88058	(Get FASTA)	NCBI Sequence Viewer
	EDL88059	(Get FASTA)	NCBI Sequence Viewer
	EDL88060	(Get FASTA)	NCBI Sequence Viewer
	EDL88061	(Get FASTA)	NCBI Sequence Viewer
	EDL88062	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017531
	ENSRNOP00000077659
	ENSRNOP00000089783
	ENSRNOP00000096395
	ENSRNOP00000099194
	ENSRNOP00000099233
GenBank Protein	Q63421	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_112340 ⟸ NM_031078

- UniProtKB:

Q63421 (UniProtKB/Swiss-Prot), A0A8I6AQQ1 (UniProtKB/TrEMBL), A6K104 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTDTSHKKEGFKKCRSATFSIDGYSFTIVANEAGDKNARPLARFSRSKSQNCLWNSLIDGLTGN
VKEKPRPTIVQDTRPPEEILADELPQLDSPEALVKTSFRLRSLVKQLERGEASVVDLKKNLEYA
ATVLESVYIDETRRLLDTEDELSDIQSDAVPSEVRDWLASTFTRQMGMMLRRSDEKPRFKSIVH
AVQAGIFVERMYRRTSNMVGLSYPPAVIDALKDVDTWSFDVFSLNEASGDHALKFIFYELLTRY
DLISRFKIPISALVSFVEALEVGYSKHKNPYHNLMHAADVTQTVHYLLYKTGVANWLTELEIFA
IIFSAAIHDYEHTGTTNNFHIQTRSDPAILYNDRSVLENHHLSAAYRLLQEDEEMNILVNLSKD
DWREFRTLVIEMVMATDMSCHFQQIKAMKTALQQPEAIEKPKALSLMLHTADISHPAKAWDLHH
RWTMSLLEEFFRQGDREAELGLPFSPLCDRKSTMVAQSQVGFIDFIVEPTFTVLTDMTEKIVSP
LIDETSQTGGTGQRRSSLNSINSSDAKRSGVKSSGSEGSAPINNSVIPVDYKSFKATWTEVVQI
NRERWRAKVPKEEKAKKEAEEKARLAAEEKQKEMEAKSQAEQGTTSKAEKKTSGETKGQVNGTR
TSKGDNPRGKNSKGDKAGEKQQNGDLKDGKNKADKKDHSNTGNESKKADGTKKRSHGSPAPSTS
STSRLTLPVIKPPLRHFKRPAYASSSYAPSVPKKTDDHPVRYKMLDQRIKIKKIQNISHHWNKK

hide sequence

RefSeq Acc Id:	XP_008761144 ⟸ XM_008762922
- Peptide Label:	isoform X2
- UniProtKB:	F1LMX4 (UniProtKB/TrEMBL), A6K105 (UniProtKB/TrEMBL), A0A8I5Y1F5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESPTKEIEEFESNSLKHLQPEQIEKIWLRLRGLRKYKKTSQRLRSLVKQLERGEASVVDLKKN LEYAATVLESVYIDETRRLLDTEDELSDIQSDAVPSEVRDWLASTFTRQMGMMLRRSDEKPRFK SIVHAVQAGIFVERMYRRTSNMVGLSYPPAVIDALKDVDTWSFDVFSLNEASGDHALKFIFYEL LTRYDLISRFKIPISALVSFVEALEVGYSKHKNPYHNLMHAADVTQTVHYLLYKTGVANWLTEL EIFAIIFSAAIHDYEHTGTTNNFHIQTRSDPAILYNDRSVLENHHLSAAYRLLQEDEEMNILVN LSKDDWREFRTLVIEMVMATDMSCHFQQIKAMKTALQQPEAIEKPKALSLMLHTADISHPAKAW DLHHRWTMSLLEEFFRQGDREAELGLPFSPLCDRKSTMVAQSQVGFIDFIVEPTFTVLTDMTEK IVSPLIDETSQTGGTGQRRSSLNSINSSDAKRSGVKSSGSEGSAPINNSVIPVDYKSFKATWTE VVQINRERWRAKVPKEEKAKKEAEEKARLAAEEKQKEMEAKSQAEQGTTSKAEKKTSGETKGQV NGTRTSKGDNPRGKNSKGDKAGEKQQNGDLKDGKNKADKKDHSNTGNESKKADGTKKRSHGSPA PSTSSTSRLTLPVIKPPLRHFKRPAYASSSYAPSVPKKTDDHPVRYKMLDQRIKMKKIQNISHH WNKK hide sequence

Ensembl Acc Id:

ENSRNOP00000017531 ⟸ ENSRNOT00000017531

Ensembl Acc Id:

ENSRNOP00000075405 ⟸ ENSRNOT00000081244

RefSeq Acc Id:	XP_038964361 ⟸ XM_039108433
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AQQ1 (UniProtKB/TrEMBL), A6K104 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964362 ⟸ XM_039108434
- Peptide Label:	isoform X2
- UniProtKB:	F1LMX4 (UniProtKB/TrEMBL), A6K105 (UniProtKB/TrEMBL), A0A8I5Y1F5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964360 ⟸ XM_039108432
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AQQ1 (UniProtKB/TrEMBL), A6K104 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964363 ⟸ XM_039108435
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A8V6 (UniProtKB/TrEMBL), A0A8I6AQQ1 (UniProtKB/TrEMBL), A6K104 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000077659 ⟸ ENSRNOT00000098034

Ensembl Acc Id:

ENSRNOP00000096395 ⟸ ENSRNOT00000098186

Ensembl Acc Id:

ENSRNOP00000078829 ⟸ ENSRNOT00000105428

Ensembl Acc Id:

ENSRNOP00000078259 ⟸ ENSRNOT00000114533

Ensembl Acc Id:

ENSRNOP00000089783 ⟸ ENSRNOT00000118567

Ensembl Acc Id:

ENSRNOP00000095937 ⟸ ENSRNOT00000102583

Ensembl Acc Id:

ENSRNOP00000084095 ⟸ ENSRNOT00000097934

RefSeq Acc Id:	XP_063142821 ⟸ XM_063286751
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AMU0 (UniProtKB/TrEMBL), A6K107 (UniProtKB/TrEMBL), A0A8I5Y1F5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142823 ⟸ XM_063286753
- Peptide Label:	isoform X5
- UniProtKB:	A6K108 (UniProtKB/TrEMBL), A0A8I5Y1F5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142822 ⟸ XM_063286752
- Peptide Label:	isoform X5
- UniProtKB:	A6K108 (UniProtKB/TrEMBL), A0A8I5Y1F5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099233 ⟸ ENSRNOT00000146532

Ensembl Acc Id:

ENSRNOP00000105005 ⟸ ENSRNOT00000152371

Ensembl Acc Id:

ENSRNOP00000110688 ⟸ ENSRNOT00000121103

Ensembl Acc Id:

ENSRNOP00000099194 ⟸ ENSRNOT00000167670

Protein Domains

PDEase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q63421-F1-model_v2	AlphaFold	Q63421	1-768	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:68332	AgrOrtholog
BioCyc Gene	G2FUF-44723	BioCyc
Ensembl Genes	ENSRNOG00000012337	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000017531	ENTREZGENE
	ENSRNOT00000098034	ENTREZGENE
	ENSRNOT00000098186	ENTREZGENE
	ENSRNOT00000118567	ENTREZGENE
	ENSRNOT00000146532	ENTREZGENE
	ENSRNOT00000167670	ENTREZGENE
Gene3D-CATH	1.10.1300.10	UniProtKB/Swiss-Prot
InterPro	HD/PDEase_dom	UniProtKB/Swiss-Prot
	PDEase	UniProtKB/Swiss-Prot
	PDEase_catalytic_dom	UniProtKB/Swiss-Prot
	PDEase_catalytic_dom_sf	UniProtKB/Swiss-Prot
	PDEase_CS	UniProtKB/Swiss-Prot
	PDEase_N	UniProtKB/Swiss-Prot
KEGG Report	rno:81742	UniProtKB/Swiss-Prot
NCBI Gene	81742	ENTREZGENE
PANTHER	CYCLIC NUCLEOTIDE PHOSPHODIESTERASE	UniProtKB/Swiss-Prot
Pfam	PDEase_I	UniProtKB/Swiss-Prot
	PDEase_I_N	UniProtKB/Swiss-Prot
PhenoGen	Pde1c	PhenoGen
PRINTS	PDIESTERASE1	UniProtKB/Swiss-Prot
PROSITE	PDEASE_I_1	UniProtKB/Swiss-Prot
	PDEASE_I_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000012337	RatGTEx
SMART	HDc	UniProtKB/Swiss-Prot
Superfamily-SCOP	HD-domain/PDEase-like	UniProtKB/Swiss-Prot
UniProt	A0A8I5Y1F5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZM70_RAT	UniProtKB/TrEMBL
	A0A8I6A8V6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AMU0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQQ1	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L4E5_RAT	UniProtKB/TrEMBL
	A0ABK0L9K0_RAT	UniProtKB/TrEMBL
	A0ABK0LW65_RAT	UniProtKB/TrEMBL
	A0ABK0M2Y6_RAT	UniProtKB/TrEMBL
	A6K104	ENTREZGENE, UniProtKB/TrEMBL
	A6K105	ENTREZGENE, UniProtKB/TrEMBL
	A6K107	ENTREZGENE, UniProtKB/TrEMBL
	A6K108	ENTREZGENE, UniProtKB/TrEMBL
	F1LMX4	ENTREZGENE, UniProtKB/TrEMBL
	PDE1C_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q99J81_RAT	UniProtKB/TrEMBL
	Q99MN2_RAT	UniProtKB/TrEMBL
	Q99MN3_RAT	UniProtKB/TrEMBL
	Q99P54_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Pde1c	phosphodiesterase 1C			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed at high levels in olfactory sensory neurons	68318

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)