Nrep (neuronal regeneration related protein) - Rat Genome Database

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Gene: Nrep (neuronal regeneration related protein) Rattus norvegicus
Analyze
Symbol: Nrep
Name: neuronal regeneration related protein
RGD ID: 631411
Description: Involved in axon regeneration and regulation of neuron differentiation. Predicted to be located in cytoplasm. Orthologous to human NREP (neuronal regeneration related protein); INTERACTS WITH (+)-schisandrin B; 1,3,5-trinitro-1,3,5-triazinane; 1-naphthyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: neuronal protein 3.1; neuronal regeneration-related protein; P311
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,291,219 - 25,320,742 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1825,291,219 - 25,320,742 (-)EnsemblGRCr8
mRatBN7.21825,017,069 - 25,046,593 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1825,017,083 - 25,046,591 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1825,145,975 - 25,172,066 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,908,623 - 25,934,991 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,241,653 - 25,267,744 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01826,183,753 - 26,212,796 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1826,185,259 - 26,211,445 (-)Ensemblrn6Rnor6.0
Rnor_5.01825,898,561 - 25,927,610 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41825,842,127 - 25,868,219 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1824,763,452 - 24,789,542 (-)NCBICelera
RGSC_v3.11825,868,772 - 25,894,865 (-)NCBI
Cytogenetic Map18p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
(R)-pantothenic acid  (ISO)
1,2-dichloroethane  (ISO)
1,3,5-trinitro-1,3,5-triazinane  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
acetamide  (EXP)
acrylamide  (EXP,ISO)
adefovir pivoxil  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
amitriptyline  (EXP)
ammonium chloride  (EXP)
amphibole asbestos  (ISO)
Ampullosporin  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
buspirone  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbon nanotube  (ISO)
celastrol  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cidofovir anhydrous  (ISO)
ciglitazone  (ISO)
clodronic acid  (ISO)
clomipramine  (EXP)
cobalt dichloride  (EXP,ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (EXP)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diallyl disulfide  (ISO)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
Didecyldimethylammonium  (ISO)
diethyl maleate  (EXP)
dioxygen  (ISO)
diquat  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gedunin  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glycidol  (EXP)
hydralazine  (ISO)
ifosfamide  (ISO)
imipramine  (EXP)
indole-3-methanol  (EXP)
inulin  (ISO)
ketamine  (EXP)
ketoconazole  (EXP)
L-ascorbic acid  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
leflunomide  (EXP)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
Monobutylphthalate  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nevirapine  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
nimesulide  (EXP)
okadaic acid  (ISO)
orphenadrine  (EXP)
oxaliplatin  (EXP)
oxycodone  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
phenylephrine  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sotorasib  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
theophylline  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trametinib  (ISO)
tributylstannane  (ISO)
tricetin  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. P311 accelerates nerve regeneration of the axotomized facial nerve. Fujitani M, etal., J Neurochem 2004 Nov;91(3):737-44.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Information Derived from GenBank Report RGD, Sept. 2003
Additional References at PubMed
PMID:14985127   PMID:26335191   PMID:26559022   PMID:29436600   PMID:35779227  


Genomics

Comparative Map Data
Nrep
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,291,219 - 25,320,742 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1825,291,219 - 25,320,742 (-)EnsemblGRCr8
mRatBN7.21825,017,069 - 25,046,593 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1825,017,083 - 25,046,591 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1825,145,975 - 25,172,066 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01825,908,623 - 25,934,991 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,241,653 - 25,267,744 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01826,183,753 - 26,212,796 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1826,185,259 - 26,211,445 (-)Ensemblrn6Rnor6.0
Rnor_5.01825,898,561 - 25,927,610 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41825,842,127 - 25,868,219 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1824,763,452 - 24,789,542 (-)NCBICelera
RGSC_v3.11825,868,772 - 25,894,865 (-)NCBI
Cytogenetic Map18p12NCBI
NREP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385111,728,802 - 111,976,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5111,662,621 - 111,997,464 (-)Ensemblhg38GRCh38
GRCh375111,064,499 - 111,312,629 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365111,092,892 - 111,120,854 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345111,092,891 - 111,120,854NCBI
Celera5107,010,594 - 107,258,308 (-)NCBICelera
Cytogenetic Map5q22.1NCBI
HuRef5106,243,630 - 106,491,590 (-)NCBIHuRef
CHM1_15110,498,248 - 110,745,872 (-)NCBICHM1_1
T2T-CHM13v2.05112,239,135 - 112,487,266 (-)NCBIT2T-CHM13v2.0
Nrep
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391833,570,072 - 33,597,444 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1833,570,072 - 33,597,082 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381833,437,019 - 33,464,365 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1833,437,019 - 33,464,029 (-)Ensemblmm10GRCm38
MGSCv371833,596,673 - 33,623,683 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361833,561,830 - 33,588,243 (-)NCBIMGSCv36mm8
Celera1833,884,768 - 33,926,480 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.18NCBI
Nrep
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554183,436,731 - 3,464,667 (+)Ensembl
ChiLan1.0NW_0049554183,435,784 - 3,464,667 (+)NCBIChiLan1.0ChiLan1.0
NREP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24106,985,860 - 107,014,824 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15105,139,515 - 105,387,522 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05107,089,968 - 107,118,919 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15112,891,542 - 113,139,436 (-)NCBIPanPan1.1PanPan1.1panPan2
NREP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13997,142 - 1,025,215 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3997,234 - 1,024,087 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha32,288,883 - 2,426,407 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03735,742 - 872,096 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3843,872 - 872,093 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13723,818 - 861,319 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03720,454 - 857,987 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03884,007 - 1,021,530 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nrep
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213155,505,760 - 155,533,814 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365316,077,716 - 6,104,479 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365316,077,691 - 6,105,517 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NREP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2117,838,660 - 117,867,801 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12117,505,851 - 117,867,805 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22122,373,456 - 122,393,187 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NREP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12315,065,565 - 15,314,999 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2315,064,445 - 15,093,992 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603463,154,650 - 63,403,845 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nrep
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474329,529,356 - 29,557,414 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474329,529,356 - 29,557,620 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nrep
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11510,873,240 - 10,900,470 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nrep
257 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:27
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000027739
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181221923726822399Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181221923726822399Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181221923726822399Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181221923726822399Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181221923726822399Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181221923726822399Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181221923726822399Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
PMC151607P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21825,017,665 - 25,018,002 (+)MAPPERmRatBN7.2
Rnor_6.01826,184,350 - 26,184,686NCBIRnor6.0
Rnor_5.01825,899,158 - 25,899,494UniSTSRnor5.0
RGSC_v3.41825,841,218 - 25,841,554UniSTSRGSC3.4
Celera1824,762,543 - 24,762,879UniSTS
Cytogenetic Map18p12UniSTS
G54138  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21825,017,385 - 25,017,531 (+)MAPPERmRatBN7.2
Rnor_6.01826,184,070 - 26,184,215NCBIRnor6.0
Rnor_5.01825,898,878 - 25,899,023UniSTSRnor5.0
RGSC_v3.41825,840,938 - 25,841,083UniSTSRGSC3.4
Celera1824,762,263 - 24,762,408UniSTS
Cytogenetic Map18p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 47 59 6 311 147 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000027739   ⟹   ENSRNOP00000027739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1826,185,259 - 26,211,445 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119499   ⟹   ENSRNOP00000086813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1825,291,219 - 25,320,742 (-)Ensembl
mRatBN7.2 Ensembl1825,017,083 - 25,046,591 (-)Ensembl
RefSeq Acc Id: NM_001419560   ⟹   NP_001406489
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,291,219 - 25,320,742 (-)NCBI
mRatBN7.21825,017,069 - 25,046,593 (-)NCBI
RefSeq Acc Id: NM_001419561   ⟹   NP_001406490
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,291,219 - 25,320,124 (-)NCBI
mRatBN7.21825,017,069 - 25,045,975 (-)NCBI
RefSeq Acc Id: XM_063277456   ⟹   XP_063133526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,291,219 - 25,320,548 (-)NCBI
RefSeq Acc Id: XM_063277457   ⟹   XP_063133527
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,291,219 - 25,320,304 (-)NCBI
Ensembl Acc Id: ENSRNOP00000027739   ⟸   ENSRNOT00000027739
Ensembl Acc Id: ENSRNOP00000086813   ⟸   ENSRNOT00000119499
RefSeq Acc Id: NP_001406489   ⟸   NM_001419560
- UniProtKB: Q80Z34 (UniProtKB/Swiss-Prot),   A6J2S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001406490   ⟸   NM_001419561
- UniProtKB: Q80Z34 (UniProtKB/Swiss-Prot),   A6J2S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133526   ⟸   XM_063277456
- Peptide Label: isoform X1
- UniProtKB: Q80Z34 (UniProtKB/Swiss-Prot),   A6J2S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133527   ⟸   XM_063277457
- Peptide Label: isoform X1
- UniProtKB: Q80Z34 (UniProtKB/Swiss-Prot),   A6J2S2 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80Z34-F1-model_v2 AlphaFold Q80Z34 1-68 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:631411 AgrOrtholog
BioCyc Gene G2FUF-7997 BioCyc
Ensembl Genes ENSRNOG00000020467 Ensembl
  ENSRNOG00000068914 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000119499 ENTREZGENE
  ENSRNOT00000119499.1 UniProtKB/Swiss-Prot
InterPro Neuronal_3.1 UniProtKB/Swiss-Prot
NCBI Gene 338475 ENTREZGENE
PANTHER NEURONAL REGENERATION-RELATED PROTEIN UniProtKB/Swiss-Prot
  PTHR17102 UniProtKB/Swiss-Prot
Pfam Alveol-reg_P311 UniProtKB/Swiss-Prot
PhenoGen Nrep PhenoGen
RatGTEx ENSRNOG00000020467 RatGTEx
  ENSRNOG00000068914 RatGTEx
UniProt A6J2R9_RAT UniProtKB/TrEMBL
  A6J2S2 ENTREZGENE, UniProtKB/TrEMBL
  NREP_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Nrep  neuronal regeneration related protein      Symbol and Name status set to approved 1299863 APPROVED