Zfp335 (zinc finger protein 335) - Rat Genome Database

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Gene: Zfp335 (zinc finger protein 335) Rattus norvegicus
Analyze
Symbol: Zfp335
Name: zinc finger protein 335
RGD ID: 628751
Description: Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; histone methyltransferase binding activity; and nuclear receptor coactivator activity. Predicted to be involved in nervous system development; positive regulation of cell population proliferation; and regulation of gene expression. Predicted to act upstream of or within several processes, including brain development; in utero embryonic development; and regulation of neurogenesis. Predicted to be located in nucleoplasm. Predicted to be part of histone methyltransferase complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 10. Orthologous to human ZNF335 (zinc finger protein 335); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102554906; Nif; Nif-1; Nif1; NRC-interacting factor 1; uncharacterized LOC102554906; zinc-finger/leucine-zipper co-transducer NIF-1; Znf335
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,046,789 - 174,073,076 (-)NCBIGRCr8
mRatBN7.23153,618,587 - 153,648,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,627,467 - 153,647,054 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,435,890 - 157,456,607 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,934,864 - 165,955,581 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,678,637 - 163,699,354 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,357,201 - 161,378,073 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,357,278 - 161,376,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,541,821 - 167,562,537 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,927,554 - 155,946,834 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,833,581 - 155,843,252 (-)NCBI
Celera3152,233,035 - 152,253,883 (-)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
histone methyltransferase complex  (IEA,ISO,ISS)
nucleoplasm  (ISO)
nucleus  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Components of the CCR4-NOT complex function as nuclear hormone receptor coactivators via association with the NRC-interacting Factor NIF-1. Garapaty S, etal., J Biol Chem. 2008 Mar 14;283(11):6806-16. doi: 10.1074/jbc.M706986200. Epub 2008 Jan 7.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. NRC-interacting factor 1 is a novel cotransducer that interacts with and regulates the activity of the nuclear hormone receptor coactivator NRC. Mahajan MA, etal., Mol Cell Biol 2002 Oct;22(19):6883-94.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23178126   PMID:25573434  


Genomics

Comparative Map Data
Zfp335
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83174,046,789 - 174,073,076 (-)NCBIGRCr8
mRatBN7.23153,618,587 - 153,648,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,627,467 - 153,647,054 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,435,890 - 157,456,607 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,934,864 - 165,955,581 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,678,637 - 163,699,354 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03161,357,201 - 161,378,073 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,357,278 - 161,376,119 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,541,821 - 167,562,537 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,927,554 - 155,946,834 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,833,581 - 155,843,252 (-)NCBI
Celera3152,233,035 - 152,253,883 (-)NCBICelera
Cytogenetic Map3q42NCBI
ZNF335
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,948,660 - 45,972,203 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,948,660 - 45,972,203 (-)EnsemblGRCh38hg38GRCh38
GRCh372044,577,299 - 44,600,842 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362044,010,699 - 44,034,240 (-)NCBINCBI36Build 36hg18NCBI36
Build 342044,010,699 - 44,034,240NCBI
Celera2041,288,749 - 41,312,289 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2041,318,761 - 41,342,313 (-)NCBIHuRef
CHM1_12044,479,949 - 44,503,488 (-)NCBICHM1_1
T2T-CHM13v2.02047,684,713 - 47,708,265 (-)NCBIT2T-CHM13v2.0
Zfp335
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,733,802 - 164,756,034 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,733,802 - 164,753,677 (-)EnsemblGRCm39 Ensembl
GRCm382164,891,882 - 164,912,585 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,891,882 - 164,911,757 (-)EnsemblGRCm38mm10GRCm38
MGSCv372164,717,392 - 164,737,250 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362164,583,082 - 164,602,803 (-)NCBIMGSCv36mm8
Celera2170,829,139 - 170,848,989 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.27NCBI
Znf335
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,335,908 - 11,354,300 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544511,334,742 - 11,354,584 (+)NCBIChiLan1.0ChiLan1.0
ZNF335
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,690,059 - 51,715,263 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,683,168 - 51,708,874 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02042,287,518 - 42,312,169 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12043,374,591 - 43,398,047 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2043,374,591 - 43,397,724 (-)Ensemblpanpan1.1panPan2
ZNF335
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12433,226,636 - 33,246,496 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2433,226,688 - 33,245,901 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,742,053 - 32,773,553 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,925,508 - 33,957,030 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,932,926 - 33,956,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12433,183,793 - 33,215,282 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02433,299,106 - 33,330,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,838,088 - 33,869,585 (-)NCBIUU_Cfam_GSD_1.0
Znf335
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640191,617,975 - 191,636,823 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,072,554 - 7,090,183 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,070,030 - 7,090,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF335
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1748,132,404 - 48,153,181 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11748,132,531 - 48,153,251 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21753,772,532 - 53,792,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF335
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1217,912,892 - 17,937,546 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl217,914,387 - 17,937,313 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605066,548,789 - 66,573,289 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf335
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247908,625,150 - 8,647,441 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247908,624,316 - 8,646,712 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp335
40 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:117
Count of miRNA genes:88
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000023521, ENSRNOT00000066944
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301411Bp320Blood pressure QTL 3200.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145925360166177555Rat
12879876Bw182Body weight QTL 1820.003body mass (VT:0001259)body weight (CMO:0000012)3145925360166177555Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1300113Bp176Blood pressure QTL 1763.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3145956084157309487Rat
12879872Cm97Cardiac mass QTL 970.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3145925360166177555Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
12879873Cm96Cardiac mass QTL 960.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)3145925360166177555Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
12879874Cm98Cardiac mass QTL 980.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)3145925360166177555Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
12879875Kidm64Kidney mass QTL 640.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3145925360166177555Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
61335Bp20Blood pressure QTL 203arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141339236155617360Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1331726Bp208Blood pressure QTL 2083.129arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3141339013162184794Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3145956084161299569Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
12879871Am7Aortic mass QTL 70.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)3145925360166177555Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat

Markers in Region
BM385093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,628,702 - 153,628,855 (+)MAPPERmRatBN7.2
Rnor_6.03161,358,439 - 161,358,591NCBIRnor6.0
Rnor_5.03167,543,059 - 167,543,211UniSTSRnor5.0
RGSC_v3.43155,928,783 - 155,928,935UniSTSRGSC3.4
Celera3152,234,273 - 152,234,425UniSTS
RH 3.4 Map31426.8UniSTS
Cytogenetic Map3q42UniSTS
RH139455  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23153,629,917 - 153,630,051 (+)MAPPERmRatBN7.2
Rnor_6.03161,359,654 - 161,359,787NCBIRnor6.0
Rnor_5.03167,544,274 - 167,544,407UniSTSRnor5.0
RGSC_v3.43155,929,998 - 155,930,131UniSTSRGSC3.4
Celera3152,235,488 - 152,235,621UniSTS
RH 3.4 Map31424.1UniSTS
Cytogenetic Map3q42UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039104393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF309071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY079168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023521   ⟹   ENSRNOP00000023523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3153,627,546 - 153,647,054 (-)Ensembl
Rnor_6.0 Ensembl3161,357,278 - 161,376,119 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109517   ⟹   ENSRNOP00000077500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3153,627,467 - 153,646,481 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110042   ⟹   ENSRNOP00000097203
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3153,627,467 - 153,646,481 (-)Ensembl
RefSeq Acc Id: NM_001100486   ⟹   NP_001093956
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,790 - 174,067,534 (-)NCBI
mRatBN7.23153,627,466 - 153,648,213 (-)NCBI
RefSeq Acc Id: XM_039104392   ⟹   XP_038960320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,789 - 174,073,076 (-)NCBI
mRatBN7.23153,627,020 - 153,648,213 (-)NCBI
RefSeq Acc Id: XM_039104393   ⟹   XP_038960321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,789 - 174,057,344 (-)NCBI
mRatBN7.23153,627,020 - 153,638,021 (-)NCBI
RefSeq Acc Id: XM_063283171   ⟹   XP_063139241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,789 - 174,073,076 (-)NCBI
RefSeq Acc Id: XM_063283172   ⟹   XP_063139242
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83174,046,789 - 174,066,242 (-)NCBI
Ensembl Acc Id: ENSRNOP00000023523   ⟸   ENSRNOT00000023521
RefSeq Acc Id: XP_038960320   ⟸   XM_039104392
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y9K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038960321   ⟸   XM_039104393
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001093956   ⟸   NM_001100486
- UniProtKB: G3V893 (UniProtKB/Swiss-Prot),   Q8CIV9 (UniProtKB/Swiss-Prot),   A0A8I5Y9K3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097203   ⟸   ENSRNOT00000110042
Ensembl Acc Id: ENSRNOP00000077500   ⟸   ENSRNOT00000109517
RefSeq Acc Id: XP_063139241   ⟸   XM_063283171
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y9K3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139242   ⟸   XM_063283172
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y9K3 (UniProtKB/TrEMBL)
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V893-F1-model_v2 AlphaFold G3V893 1-1336 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628751 AgrOrtholog
BioCyc Gene G2FUF-46818 BioCyc
Ensembl Genes ENSRNOG00000017290 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023521.9 UniProtKB/TrEMBL
  ENSRNOT00000109517.1 UniProtKB/TrEMBL
  ENSRNOT00000110042.1 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Zinc_finger/UBP_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 259270 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-H2C2_5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp335 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017290 RatGTEx
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140TAC9_RAT UniProtKB/TrEMBL
  A0A8I5Y9K3 ENTREZGENE, UniProtKB/TrEMBL
  G3V893 ENTREZGENE
  Q8CIV9 ENTREZGENE
  ZN335_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q8CIV9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Zfp335  zinc finger protein 335  LOC102554906  uncharacterized LOC102554906  Data merged from RGD:7694697 737654 PROVISIONAL
2013-12-18 LOC102554906  uncharacterized LOC102554906      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Zfp335  zinc finger protein 335  Nif1  zinc-finger/leucine-zipper co-transducer NIF-1  Symbol and Name updated 1299863 APPROVED
2003-02-27 Nif1  zinc-finger/leucine-zipper co-transducer NIF-1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains six Cys-2/His-2 zinc fingers, an N-terminal stretch of acidic amino acids, and a C-terminal leucine zipper-like motif 633400