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Gene: Zc3h14 (zinc finger CCCH type containing 14) Rattus norvegicus

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Symbol:

Zc3h14

Name:

zinc finger CCCH type containing 14

RGD ID:

621850

Description:

Predicted to enable mRNA 3'-UTR binding activity; poly(A) binding activity; and pre-mRNA binding activity. Predicted to be involved in mRNA stabilization; spermatogenesis; and spliceosome-depend formation of circular RNA. Located in nuclear speck. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 56. Orthologous to human ZC3H14 (zinc finger CCCH-type containing 14); INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Loc192359; MGC105318; Npuk68; nuclear protein UKp68; nuclear protein UKp83/UKp68; zinc finger CCCH domain-containing protein 14

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZC3H14 (zinc finger CCCH-type containing 14)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Zc3h14 (zinc finger CCCH type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zc3h14 (zinc finger CCCH-type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZC3H14 (zinc finger CCCH-type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZC3H14 (zinc finger CCCH-type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zc3h14 (zinc finger CCCH-type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZC3H14 (zinc finger CCCH-type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZC3H14 (zinc finger CCCH-type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zc3h14 (zinc finger CCCH-type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zc3h14 (zinc finger CCCH-type containing 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZC3H14 (zinc finger CCCH-type containing 14)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zc3h14 (zinc finger CCCH type containing 14)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zc3h14 (zinc finger CCCH-type containing 14)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NAB2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	NAB2	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Nab2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Nab2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sut-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sut-2	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zc3h14	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	123,736,120 - 123,773,775 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	123,736,148 - 123,774,266 (+)	Ensembl				GRCr8
mRatBN7.2	6	118,006,420 - 118,044,480 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	118,006,458 - 118,044,105 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	118,157,055 - 118,194,694 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	118,453,852 - 118,491,495 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	117,788,713 - 117,826,350 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	122,729,834 - 122,767,462 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	122,729,874 - 122,767,462 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	131,951,431 - 131,988,793 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	122,919,317 - 122,956,935 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	115,566,039 - 115,603,630 (+)	NCBI		Celera
RGSC_v3.1	6	122,923,063 - 122,959,828 (+)	NCBI
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive intellectual developmental disorder 56 (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chloroprene (EXP)

chlorpyrifos (ISO)

coumarin (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

enzyme inhibitor (ISO)

folic acid (ISO)

FR900359 (ISO)

glafenine (EXP)

GSK-J4 (ISO)

ivermectin (ISO)

Nivalenol (ISO)

ochratoxin A (ISO)

propiconazole (ISO)

resveratrol (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

thioacetamide (EXP)

triphenyl phosphate (EXP,ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

mRNA stabilization (ISO,ISS)

regulation of mRNA stability (IBA,IEA)

spermatogenesis (IEA,ISO,ISS)

spliceosome-depend formation of circular RNA (ISO)

Cellular Component

axon cytoplasm (ISO)

cytoplasm (IBA,ISO)

dendrite cytoplasm (ISO)

nuclear speck (IDA,IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

ribonucleoprotein complex (ISO)

Molecular Function

metal ion binding (IEA)

mRNA 3'-UTR binding (ISO)

poly(A) binding (IBA,IEA,ISO,ISS)

pre-mRNA binding (ISO,ISS)

protein binding (ISO)

RNA binding (IEA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	Mutation of the conserved polyadenosine RNA binding protein, ZC3H14/dNab2, impairs neural function in Drosophila and humans.	Pak C, etal., Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12390-5. doi: 10.1073/pnas.1107103108. Epub 2011 Jul 6.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Information Derived from GenBank Report	RGD, Sept. 2003

Additional References at PubMed

PMID:12477932	PMID:19303045	PMID:22658674	PMID:22681889	PMID:25931508	PMID:28793261

Genomics

Comparative Map Data

Zc3h14
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	123,736,120 - 123,773,775 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	123,736,148 - 123,774,266 (+)	Ensembl				GRCr8
mRatBN7.2	6	118,006,420 - 118,044,480 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	118,006,458 - 118,044,105 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	118,157,055 - 118,194,694 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	118,453,852 - 118,491,495 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	117,788,713 - 117,826,350 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	122,729,834 - 122,767,462 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	122,729,874 - 122,767,462 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	131,951,431 - 131,988,793 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	122,919,317 - 122,956,935 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	115,566,039 - 115,603,630 (+)	NCBI		Celera
RGSC_v3.1	6	122,923,063 - 122,959,828 (+)	NCBI
Cytogenetic Map	6	q32	NCBI

ZC3H14
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	88,563,037 - 88,627,596 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	88,562,948 - 88,627,596 (+)	Ensembl			hg38	GRCh38
GRCh37	14	89,029,381 - 89,093,940 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	88,099,067 - 88,149,606 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	14	88,099,066 - 88,149,605	NCBI
Celera	14	69,074,847 - 69,125,490 (+)	NCBI		Celera
Cytogenetic Map	14	q31.3	NCBI
HuRef	14	69,199,537 - 69,250,105 (+)	NCBI		HuRef
CHM1_1	14	88,967,098 - 89,017,712 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	82,783,861 - 82,848,491 (+)	NCBI		T2T-CHM13v2.0

Zc3h14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	98,708,276 - 98,754,033 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	98,713,223 - 98,754,012 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	98,742,017 - 98,787,774 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	98,746,964 - 98,787,753 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	99,985,178 - 100,025,984 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	99,148,018 - 99,188,824 (+)	NCBI		MGSCv36	mm8
Celera	12	99,972,615 - 100,013,473 (+)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	49.88	NCBI

Zc3h14
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	11,173,849 - 11,223,700 (+)	Ensembl
ChiLan1.0	NW_004955438	11,173,849 - 11,223,700 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZC3H14
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	89,709,618 - 89,760,624 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	88,926,125 - 88,977,131 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	69,183,212 - 69,243,438 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	88,540,482 - 88,592,146 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	88,540,482 - 88,590,757 (+)	Ensembl			panPan2	panpan1.1

ZC3H14
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	59,796,607 - 59,849,928 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	59,796,598 - 59,849,926 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	59,374,599 - 59,429,229 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	60,066,146 - 60,120,957 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	60,066,143 - 60,122,051 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	59,745,053 - 59,799,899 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	59,790,823 - 59,845,182 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	60,124,572 - 60,179,220 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zc3h14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	16,009,213 - 16,059,922 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	16,009,123 - 16,059,997 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	16,009,081 - 16,058,642 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZC3H14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	110,463,517 - 110,513,257 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	110,463,459 - 110,513,231 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	116,962,039 - 117,008,530 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZC3H14
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	66,200,140 - 66,249,343 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	66,200,181 - 66,249,210 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	53,560,713 - 53,608,487 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zc3h14
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	13,734,401 - 13,788,057 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	13,734,406 - 13,787,341 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zc3h14
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	111,904,140 - 111,941,395 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zc3h14
331 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	296
Count of miRNA genes:	106
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000039509, ENSRNOT00000040440
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	99437079	125323237	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Markers in Region

RH142560

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	118,010,478 - 118,010,660 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	122,733,880 - 122,734,061	NCBI	Rnor6.0
Rnor_5.0	6	131,955,437 - 131,955,618	UniSTS	Rnor5.0
RGSC_v3.4	6	122,923,323 - 122,923,504	UniSTS	RGSC3.4
Celera	6	115,570,045 - 115,570,226	UniSTS
RH 3.4 Map	6	863.3	UniSTS
Cytogenetic Map	6	q32	UniSTS

BF403126

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	123,771,338 - 123,771,516 (+)	Marker Load Pipeline
mRatBN7.2	6	118,041,625 - 118,041,803 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	122,765,026 - 122,765,203	NCBI	Rnor6.0
Rnor_5.0	6	131,986,357 - 131,986,534	UniSTS	Rnor5.0
RGSC_v3.4	6	122,954,499 - 122,954,676	UniSTS	RGSC3.4
Celera	6	115,601,194 - 115,601,371	UniSTS
RH 3.4 Map	6	863.5	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH140815

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	118,042,974 - 118,043,200 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	122,766,375 - 122,766,600	NCBI	Rnor6.0
Rnor_5.0	6	131,987,706 - 131,987,931	UniSTS	Rnor5.0
RGSC_v3.4	6	122,955,848 - 122,956,073	UniSTS	RGSC3.4
Celera	6	115,602,543 - 115,602,768	UniSTS
RH 3.4 Map	6	884.5	UniSTS
Cytogenetic Map	6	q32	UniSTS

AU014748

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	118,043,889 - 118,044,045 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	122,767,290 - 122,767,445	NCBI	Rnor6.0
Rnor_5.0	6	131,988,621 - 131,988,776	UniSTS	Rnor5.0
RGSC_v3.4	6	122,956,763 - 122,956,918	UniSTS	RGSC3.4
Celera	6	115,603,458 - 115,603,613	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033951	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_138920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111767	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB032932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB097075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB097076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AB097077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC098929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ303482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000039509 ⟹ ENSRNOP00000035319

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	123,741,545 - 123,771,784 (+)	Ensembl
mRatBN7.2 Ensembl	6	118,011,831 - 118,042,071 (+)	Ensembl
Rnor_6.0 Ensembl	6	122,729,874 - 122,766,608 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000040440 ⟹ ENSRNOP00000047580

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	123,736,157 - 123,773,844 (+)	Ensembl
mRatBN7.2 Ensembl	6	118,006,473 - 118,044,062 (+)	Ensembl
Rnor_6.0 Ensembl	6	122,729,874 - 122,767,462 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078050 ⟹ ENSRNOP00000073344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	123,757,187 - 123,772,921 (+)	Ensembl
mRatBN7.2 Ensembl	6	118,027,459 - 118,043,208 (+)	Ensembl
Rnor_6.0 Ensembl	6	122,751,016 - 122,766,608 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100630 ⟹ ENSRNOP00000097024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	123,736,148 - 123,774,266 (+)	Ensembl
mRatBN7.2 Ensembl	6	118,006,458 - 118,044,105 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117615 ⟹ ENSRNOP00000084418

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	123,736,178 - 123,774,266 (+)	Ensembl
mRatBN7.2 Ensembl	6	118,006,458 - 118,044,105 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149129 ⟹ ENSRNOP00000102435

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	123,736,148 - 123,774,266 (+)	Ensembl

RefSeq Acc Id:

NM_001033951 ⟹ NP_001029123

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,736,187 - 123,773,775 (+)	NCBI
mRatBN7.2	6	118,006,473 - 118,044,062 (+)	NCBI
Rnor_6.0	6	122,729,874 - 122,767,462 (+)	NCBI
Rnor_5.0	6	131,951,431 - 131,988,793 (+)	NCBI
RGSC_v3.4	6	122,919,317 - 122,956,935 (+)	RGD
Celera	6	115,566,039 - 115,603,630 (+)	RGD

Sequence:

show sequence

GCCTAGGGGGGCAGGCTGCAGGGTGGCAGCCCGCGGCGGGTTCCAGGTAACCGAGGCGCCGCGC
AGTGTTGACCTGGCCGCCCGCCGCCGAGCCATGGAAATCGGCACCGAGATCAGCCGCAAGATCC
GGAGTGCCATTAAGGGGAAATTACAAGAATTAGGAGCTTACGTGGATGAAGAACTTCCTGATTA
CATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGGACCTGTCCCTGTTT
CTAGGGAACAACACAATTCGATTCACCGTATGGCTCCATGGTGTATTAGATAAACTTCGTTCTG
TTACAACTGAGCCCTCTAGTCTAAAGTCTCCTGATACCAGCATCTTTGATAGTAACGTGCCTTC
AAACAAGAGCAGTTTTAGTCGGGGAGATGAGAGAAGGCATGAAGCTGCCATTCCTCCCCTTGCC
GTTTCTAGCTCTAGACCTGAGAAAAGGGATTCCAGAGTTTCTACAAGTTCACAGGAGCACAAAT
CCACTAACGTCAGACATTCATATGATGATGGAGCTTCCACCAGGCTAATGTCAACAGTGAAACC
TTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATCAAGCCAGAACCAGATGATCTCATT
GATGAAGACCTCAATTTTGTGCAGGAGAATTCCTTATCTCAGAAAAAACCTACAGTGACACTTA
CATACGGTTCTTCTCGCCCTTCTATAGAAATTTATCGACCACCTGCAAGTAGAAATGCAGACAC
TGGTACTCATTTAAACAGGCCGCAACTTCAGCAGCAGCAAAGCAGTACCCATACTGCCAAGCAG
CTGGATGGACAGAGCAGCCAGGTGTATGAAGCAGGACGGTTGTGTGAACCAGAAGTACTTGGCA
GCGTAGAAGATACTTATAGCCCTTTCTTCAGAAACAACTTGGATAAAATGAATATTGAGGAGGA
AAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCAGTTGTTAAAGTAAAAAGATTTAGCCAT
GATGGAGAAGAGGAGGAAGAAGATGAGGATTATGGGACCCGGGTAGGAAGCTTGTCCAGCAGTG
TGTCAGTACCAGCAAAACCTGAGAGGAGACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGAA
TCTAATTTTGAAGGCTATCTCTGAAGCTCAAGAGTCTGTAACAAAAACAACTAACTATCCTGCA
GTTCCACAGAAACAGACACTTCCAGTTGCTCCTAGAACTCGAACTTCTCAAGAAGAAGTGCTCG
CAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAGAATAAGCCCCCCAGTTAAAGAAGAGGAAGC
AAAAGGAGATAATGCAGAAAAAATTGAAGGAACTCAACAGAGGCAATTGTTATCCCGACTGCAA
ATTGATCCAGTAACGGTAGACACAATGGAGCTGAGTCAAGATTACTATGACATGGAATCCATGG
TCCATGCAGACACAAGATCATTTATTCTGAAGAAGCCAAAGCTGTCTGAGGAAATAGTAGTGAC
ACCAAACCAGGATTCGGGGATGAAGACTGCAGATGCCCTTCGGGTCCTTTCAGGACACCTTATG
CAGACACGAGATCTTGTACAACCAGATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTGGATG
GTGTCCCCAGCCCCCCAGGATACATGTCAGATCAAGAGGAGGAGATGTGCTTTGAAGGAATGAA
ACCCGTAAACCAAACTTCAGCCTCAAACAAGGGACTCAGAGGCCTCCTCCACCCACAGCAGTTG
CATTTGCTGAGCAGGCAGCTTGAGGACCCAGATGGTAGCTTTTCCAACGCCGAGATGACTGACC
TGAGTGTGGCACAGAAACCAGAAAAACTCCTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAA
TGGGGATGAGTGTGTGTACCATCACCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTT
GCTGAGAAATGTTTGTTTGTGCATCCAAATTGTAAATATGACGCAAAGTGTACTAAAGCAGATT
GTCCCTTCACTCACATGAGTAGAAGAGGTCCAGTACTGACTCCAAAACCAGCAGTGTCGTCACC
AGCGCCATCTTCTAATGGCCAGTTCTGCCGTTACTTCCCTGCCTGTAAGAAAATGGAGTGTCCC
TTCTACCACCCCAAACACTGTAGGTTTAATACCCAGTGTACAAGACCAGACTGTACGTTTTATC
ACCCCACTATTACTGTGCCACCAAGACATGCCTTGAAATGGATTCGACCTCAAACCAGTGAATG
ATGCCCTAGTCCTACCTGGCAGAAGATCATGCAGTTTGAAAGCTTCCGTCTTCTGATGAGAGAT
GTTCTACAGAACTTGTCACGTCTTTGAAATTTAGAATATATTGCTTTCATAATATGAATTTTAC
TGCCCAACTGAAGTGTCTAATTTTTCAAATTTGTAAGTTTATTAAGTGGTTTCAACCTTTTTTG
TTTGTTCGTTTTGACTATGAAAAAGACAGTTTAAAGAAAAGCCAATTTTATTAAACACTGCGGC
ATGTTTGTACATTGCTGTTGAACATCATTTTTGGTAATGGTGCTGCAGCTTAGGGCTGTGGTGC
TGTGGGAGGGCCAGTGTCCTCAGAACTGAAGCACTTTTTACTTTCCCCAAAGATAATGCAGTGT
CTGTAACCCAGCGTGGAAACAGTGGCCAGACTTTGAAACTGAGGCAGCTTTGGAACAACTAGTT
TAAATTTTCTTTTTAATGTCTGAATGAATTTGCTCCGAGAAGAATAATACAGACTTTTAATTTT
GAGTGCTACTTTGGTAGAGTGGACTGAGGTCCCGTGCCTTTCTGAAAGTAAGTAGTGACATGGT
CATATAGGGTAAACATAGTTGGAATGACAATGCAAAAATGGATGAACAATTCTTTGAAATGCTC
CCATTTACTATTAGCTTATAATTTTTAAATAGTTTTGGAGGGACTACATTATCACAAAATTATA
CAAAAAGTTTTACAGGCATATGTACAGGAAGTATCAGAAAACAGACTTTGAACTCACAAGAATA
AAAATATACATATATATTCCCATATTCTGAAAAATATTGTCAGAAATAACTCCACAGAAAATAT
ACTTATGTTACTACTAAAGATCATTCTTGAAATGTAGAAGTTGAGATTTAAGTGGTATATTTTA
AATGACAGAACTATATAATTGCAGAGATAGTAAGGGTAAACTTCACAATAGGATGAACCTTGGC
CTACTGTATTATGGAGTTTTATGTGTGGTTTTGAAATTGTTAAGGCAAGATGTGTCATGTTTTA
GAATTAAATAACAGACAACTGATTTCAAAAACTTGTTTTAAAAATTAAAGTGTAAAAGGTGGTT
AGCAAAGGGGATAATAAAAGTTCAAACATTAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_138920 ⟹ NP_620275

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,736,187 - 123,772,922 (+)	NCBI
mRatBN7.2	6	118,006,473 - 118,043,209 (+)	NCBI
Rnor_6.0	6	122,729,874 - 122,766,609 (+)	NCBI
Rnor_5.0	6	131,951,431 - 131,988,793 (+)	NCBI
RGSC_v3.4	6	122,919,317 - 122,956,935 (+)	RGD
Celera	6	115,566,039 - 115,602,777 (+)	NCBI

Sequence:

show sequence

GCCTAGGGGGGCAGGCTGCAGGGTGGCAGCCCGCGGCGGGTTCCAGGTAACCGAGGCGCCGCGC
AGTGTTGACCTGGCCGCCCGCCGCCGAGCCATGGAAATCGGCACCGAGATCAGCCGCAAGATCC
GGAGTGCCATTAAGGGGAAATTACAAGAATTAGGAGCTTACGTGGATGAAGAACTTCCTGATTA
CATTATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGGACCTGTCCCTGTTT
CTAGGGAACAACACAATTCGATTCACCGTATGGCTCCATGGTGTATTAGATAAACTTCGTTCTG
TTACAACTGAGCCCTCTAGTCTAAAGTCTCCTGATACCAGCATCTTTGATAGTAACGTGCCTTC
AAACAAGAGCAGTTTTAGTCGGGGAGATGAGAGAAGGCATGAAGCTGCCATTCCTCCCCTTGCC
GTTTCTAGCTCTAGACCTGAGAAAAGGGATTCCAGAGTTTCTACAAGTTCACAGGAGCACAAAT
CCACTAACGTCAGACATTCATATGATGATGGAGCTTCCACCAGGCTAATGTCAACAGTGAAACC
TTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATCAAGCCAGAACCAGATGATCTCATT
GATGAAGACCTCAATTTTGTGCAGGAGAATTCCTTATCTCAGAAAAAACCTACAGTGACACTTA
CATACGGTTCTTCTCGCCCTTCTATAGAAATTTATCGACCACCTGCAAGTAGAAATGCAGACAC
TGGTACTCATTTAAACAGGCCGCAACTTCAGCAGCAGCAAAGCAGTACCCATACTGCCAAGCAG
CTGGATGGACAGAGCAGCCAGGTGTATGAAGCAGGACGGTTGTGTGAACCAGAAGTACTTGGCA
GCGTAGAAGATACTTATAGCCCTTTCTTCAGAAACAACTTGGATAAAATGAATATTGAGGAGGA
AAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCAGTTGTTAAAGTAAAAAGATTTAGCCAT
GATGGAGAAGAGGAGGAAGAAGATGAGGATTATGGGACCCGGGTAGGAAGCTTGTCCAGCAGTG
TGTCAGTACCAGCAAAACCTGAGAGGAGACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGAA
TCTAATTTTGAAGGCTATCTCTGAAGCTCAAGAGTCTGTAACAAAAACAACTAACTATCCTGCA
GTTCCACAGAAACAGACACTTCCAGTTGCTCCTAGAACTCGAACTTCTCAAGAAGAAGTGCTCG
CAGAAATGGTCCAGGGGCAAAACAGGGCCCCCAGAATAAGCCCCCCAGTTAAAGAAGAGGAAGC
AAAAGGAGATAATGCAGAAAAAATTGAAGGAACTCAACAGAGGCAATTGTTATCCCGACTGCAA
ATTGATCCAGTAACGGTAGACACAATGGAGCTGAGTCAAGCCGAGATGACTGACCTGAGTGTGG
CACAGAAACCAGAAAAACTCCTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGA
GTGTGTGTACCATCACCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAA
TGTTTGTTTGTGCATCCAAATTGTAAATATGACGCAAAGTGTACTAAAGCAGATTGTCCCTTCA
CTCACATGAGTAGAAGAGGTCCAGTACTGACTCCAAAACCAGCAGTGTCGTCACCAGCGCCATC
TTCTAATGGCCAGTTCTGCCGTTACTTCCCTGCCTGTAAGAAAATGGAGTGTCCCTTCTACCAC
CCCAAACACTGTAGGTTTAATACCCAGTGTACAAGACCAGACTGTACGTTTTATCACCCCACTA
TTACTGTGCCACCAAGACATGCCTTGAAATGGATTCGACCTCAAACCAGTGAATGATGCCCTAG
TCCTACCTGGCAGAAGATCATGCAGTTTGAAAGCTTCCGTCTTCTGATGAGAGATGTTCTACAG
AACTTGTCACGTCTTTGAAATTTAGAATATATTGCTTTCATAATATGAATTTTACTGCCCAACT
GAAGTGTCTAATTTTTCAAATTTGTAAGTTTATTAAGTGGTTTCAACCTTTTTTGTTTGTTCGT
TTTGACTATGAAAAAGACAGTTTAAAGAAAAGCCAATTTTATTAAACACTGCGGCATGTTTGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008764738 ⟹ XP_008762960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,736,124 - 123,772,922 (+)	NCBI
mRatBN7.2	6	118,006,421 - 118,044,133 (+)	NCBI
Rnor_6.0	6	122,729,834 - 122,766,609 (+)	NCBI

Sequence:

show sequence

CAGCAGGGGCGGGGACGCGCACGGCGGAGGCGGAGCGGCGGCCTAGGGGGGCAGGCTGCAGGGT
GGCAGCCCGCGGCGGGTTCCAGGTAACCGAGGCGCCGCGCAGTGTTGACCTGGCCGCCCGCCGC
CGAGCCATGGAAATCGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCATTAAGGGGAAATTAC
AAGAATTAGGAGCTTACGTGGATGAAGAACTTCCTGATTACATTATGGTGATGGTGGCCAACAA
GAAAAGTCAGGACCAAATGACAGAGGACCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTC
ACCGTATGGCTCCATGGTGTATTAGATAAACTTCGTTCTGTTACAACTGAGCCCTCTAGTCTAA
AGTCTCCTGATACCAGCATCTTTGATAGTAACGTGCCTTCAAACAAGAGCAGTTTTAGTCGGGG
AGATGAGAGAAGGCATGAAGCTGCCATTCCTCCCCTTGCCGTTTCTAGCTCTAGACCTGAGAAA
AGGGATTCCAGAGTTTCTACAAGTTCACAGGAGCACAAATCCACTAACGTCAGACATTCATATG
ATGATGGAGCTTCCACCAGGCTAATGTCAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGA
AGATGTGATTGATATCAAGCCAGAACCAGATGATCTCATTGATGAAGACCTCAATTTTGTGCAG
GAGAATTCCTTATCTCAGAAAAAACCTACAGTGACACTTACATACGGTTCTTCTCGCCCTTCTA
TAGAAATTTATCGACCACCTGCAAGTAGAAATGCAGACACTGGTACTCATTTAAACAGGCCGCA
ACTTCAGCAGCAGCAAAGCAGTACCCATACTGCCAAGCAGCTGGATGGACAGAGCAGCCAGGTG
TATGAAGCAGGACGGTTGTGTGAACCAGAAGTACTTGGCAGCGTAGAAGATACTTATAGCCCTT
TCTTCAGAAACAACTTGGATAAAATGAATATTGAGGAGGAAAACTTTCGGAAGAGAAAGTTGCC
TGTGGTAAGTTCAGTTGTTAAAGTAAAAAGATTTAGCCATGATGGAGAAGAGGAGGAAGAAGAT
GAGGATTATGGGACCCGGGTAGGAAGCTTGTCCAGCAGTGTGTCAGTACCAGCAAAACCTGAGA
GGAGACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGAATCTAATTTTGAAGGCTATCTCTGA
AGCTCAAGAGTCTGTAACAAAAACAACTAACTATCCTGCAGTTCCACAGAAACAGACACTTCCA
GTTGCTCCTAGAACTCGAACTTCTCAAGAAGAAGTGCTCGCAGAAATGGTCCAGGGGCAAAACA
GGGCCCCCAGAATAAGCCCCCCAGTTAAAGAAGAGGAAGCAAAAGGAGATAATGCAGAAAAAAT
TGAAGGAACTCAACAGAGGCAATTGTTATCCCGACTGCAAATTGATCCAGTAACGGTAGACACA
ATGGAGCTGAGTCAAGATTACTATGACATGGAATCCATGGTCCATGCAGACACAAGATCATTTA
TTCTGAAGAAGCCAAAGCTGTCTGAGGAAATAGTAGTGACACCAAACCAGGATTCGGGGATGAA
GACTGCAGATGCCCTTCGGGTCCTTTCAGGACACCTTATGCAGACACGAGATCTTGTACAACCA
GATAAACCTGCAAGTCCCAAGTTTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACA
TGTCAGATCAAGAGGAGGAGATGTGCTTTGAAGGAATGAAACCCGTAAACCAAACTTCAGCCTC
AAACAAGGGACTCAGAGGCCTCCTCCACCCACAGCAGTTGCATTTGCTGAGCAGGCAGCTTGAG
GACCCAGATGGTAGCTTTTCCAACGCCGAGATGACTGACCTGAGTGTGGCACAGAAACCAGAAA
AACTCCTGGAGCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGTGTACCATCA
CCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGTTTGTGCAT
CCAAATTGTAAATATGACGCAAAGTGTACTAAAGCAGATTGTCCCTTCACTCACATGAGTAGAA
GAGGTCCAGTACTGACTCCAAAACCAGTGTCGTCACCAGCGCCATCTTCTAATGGCCAGCTCTG
CCGTTACTTCCCTGCCTGTAAGAAAATGGAGTGTCCCTTCTACCACCCCAAACACTGTAGGTTT
AATACCCAGTGTACAAGACCAGACTGTACGTTTTATCACCCCACTATTACTGTGCCACCAAGAC
ATGCCTTGAAATGGATTCGACCTCAAACCAGTGAATGATGCCCTAGTCCTACCTGGCAGAAGAT
CATGCAGTTTGAAAGCTTCCGTCTTCTGATGAGAGATGTTCTACAGAACTTGTCACGTCTTTGA
AATTTAGAATATATTGCTTTCATAATATGAATTTTACTGCCCAACTGAAGTGTCTAATTTTTCA
AATTTGTAAGTTTATTAAGTGGTTTCAACCTTTTTTGTTTGTTCGTTTTGACTATGAAAAAGAC
AGTTTAAAGAAAAGCCAATTCTATTAAACACTGCGGCATGTTTGTA

hide sequence

RefSeq Acc Id:

XM_008764739 ⟹ XP_008762961

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,736,120 - 123,772,922 (+)	NCBI
mRatBN7.2	6	118,006,421 - 118,044,133 (+)	NCBI
Rnor_6.0	6	122,729,835 - 122,766,609 (+)	NCBI

Sequence:

show sequence

AGCAGGGGCGGGGACGCGCACGGCGGAGGCGGAGCGGCGGCCTAGGGGGGCAGGCTGCAGGGTG
GCAGCCCGCGGCGGGTTCCAGGTAACCGAGGCGCCGCGCAGTGTTGACCTGGCCGCCCGCCGCC
GAGCCATGGAAATCGGCACCGAGATCAGCCGCAAGATCCGGAGTGCCATTAAGGGGAAATTACA
AGAATTAGGAGCTTACGTGGATGAAGAACTTCCTGATTACATTATGGTGATGGTGGCCAACAAG
AAAAGTCAGGACCAAATGACAGAGGACCTGTCCCTGTTTCTAGGGAACAACACAATTCGATTCA
CCGTATGGCTCCATGGTGTATTAGATAAACTTCGTTCTGTTACAACTGAGCCCTCTAGTCTAAA
GTCTCCTGATACCAGCATCTTTGATAGTAACGTGCCTTCAAACAAGAGCAGTTTTAGTCGGGGA
GATGAGAGAAGGCATGAAGCTGCCATTCCTCCCCTTGCCGTTTCTAGCTCTAGACCTGAGAAAA
GGGATTCCAGAGTTTCTACAAGTTCACAGGAGCACAAATCCACTAACGTCAGACATTCATATGA
TGATGGAGCTTCCACCAGGCTAATGTCAACAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAA
GATGTGATTGATATCAAGCCAGAACCAGATGATCTCATTGATGAAGACCTCAATTTTGTGCAGG
AGAATTCCTTATCTCAGAAAAAACCTACAGTGACACTTACATACGGTTCTTCTCGCCCTTCTAT
AGAAATTTATCGACCACCTGCAAGTAGAAATGCAGACACTGGTACTCATTTAAACAGGCCGCAA
CTTCAGCAGCAGCAAAGCAGTACCCATACTGCCAAGCAGCTGGATGGACAGAGCAGCCAGGTGT
ATGAAGCAGGACGGTTGTGTGAACCAGAAGTACTTGGCAGCGTAGAAGATACTTATAGCCCTTT
CTTCAGAAACAACTTGGATAAAATGAATATTGAGGAGGAAAACTTTCGGAAGAGAAAGTTGCCT
GTGGTAAGTTCAGTTGTTAAAGTAAAAAGATTTAGCCATGATGGAGAAGAGGAGGAAGAAGATG
AGGATTATGGGACCCGGGTAGGAAGCTTGTCCAGCAGTGTGTCAGTACCAGCAAAACCTGAGAG
GAGACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGAATCTAATTTTGAAGGCTATCTCTGAA
GCTCAAGAGTCTGTAACAAAAACAACTAACTATCCTGCAGTTCCACAGAAACAGACACTTCCAG
TTGCTCCTAGAACTCGAACTTCTCAAGAAGAAGTGCTCGCAGAAATGGTCCAGGGGCAAAACAG
GGCCCCCAGAATAAGCCCCCCAGTTAAAGAAGAGGAAGCAAAAGGAGATAATGCAGAAAAAATT
GAAGGAACTCAACAGAGGCAATTGTTATCCCGACTGCAAATTGATCCAGTAACGGTAGACACAA
TGGAGCTGAGTCAAGCCGAGATGACTGACCTGAGTGTGGCACAGAAACCAGAAAAACTCCTGGA
GCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGTGTACCATCACCCCATTTCA
CCTTGCAAAGCCTTTCCCAACTGTAAATTTGCTGAGAAATGTTTGTTTGTGCATCCAAATTGTA
AATATGACGCAAAGTGTACTAAAGCAGATTGTCCCTTCACTCACATGAGTAGAAGAGGTCCAGT
ACTGACTCCAAAACCAGTGTCGTCACCAGCGCCATCTTCTAATGGCCAGCTCTGCCGTTACTTC
CCTGCCTGTAAGAAAATGGAGTGTCCCTTCTACCACCCCAAACACTGTAGGTTTAATACCCAGT
GTACAAGACCAGACTGTACGTTTTATCACCCCACTATTACTGTGCCACCAAGACATGCCTTGAA
ATGGATTCGACCTCAAACCAGTGAATGATGCCCTAGTCCTACCTGGCAGAAGATCATGCAGTTT
GAAAGCTTCCGTCTTCTGATGAGAGATGTTCTACAGAACTTGTCACGTCTTTGAAATTTAGAAT
ATATTGCTTTCATAATATGAATTTTACTGCCCAACTGAAGTGTCTAATTTTTCAAATTTGTAAG
TTTATTAAGTGGTTTCAACCTTTTTTGTTTGTTCGTTTTGACTATGAAAAAGACAGTTTAAAGA
AAAGCCAATTCTATTAAACACTGCGGCATGTTTGTA

hide sequence

RefSeq Acc Id:

XM_008764740 ⟹ XP_008762962

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,757,028 - 123,772,922 (+)	NCBI
mRatBN7.2	6	118,025,456 - 118,044,480 (+)	NCBI
Rnor_6.0	6	122,750,367 - 122,766,609 (+)	NCBI

Sequence:

show sequence

CCTAGAACTCACCCAGTAGAGCAGGCTGGCCTTGATCTCAGATCCACCTGATGAAAGGCCTGTG
TCCTCCACCGCACTCTTTTGTTGCAGGCAGGTACTTTGCCCTTAAGCCACACTGCCAATCTACA
CCATTGTAGATGAGTGCAGCTGAAGTTCGTTACTGTGTAAATGTTTTTTTAAGAGATTTGTCTA
TGATCATGAGTCCATTCGTCTTCTCTGCCTTCTCCCTGCAAAGACAAGACCAGTGCAGGACTAT
CATCTGCTAATATCAGAGGAATGAGATTTAAAATAAAGCAACTCAAAATAATATGAAACTCCAA
AATTATAGCTTAGTGGACAACAGGGTGAACATACTTGCTTAGTTTATGGAGTAGCTCTTCGGGA
TTCCCAACACATGAAGTAAATAATAGAAAGTTCTCTGGGTGTCATGTGCCTCTGCTCAGCCAAT
CAGAAGTCAGGATTATTTTGTGTAATAATAGAGTTTTCTTTGCAGAGAAGCTGTTGAGTAGGTA
GGACTTACAGGACCAAGTGGTGGTTTCAGTGCTCTTAATTGTAGAAGAGAAAATTGGTCTGGTG
GGCCTAACTTTTCACAGTATGAATTCTTACTTTAGAATGGTGTCACCTTATCTTTTTAGTTACA
GGTTTTAAAATGTCACTAGCACTCTGAAGGCAACATTGAAGATTGCTTTTACTTTTGATGAGAT
AATTTAACGGGCTATGAAAATGCCAGGAATTTTATGAAAATGTCTTCAAGGTTTTCATCGCCAT
CTCTACCAGTGTTCCTCTCACCAGAGCCAGCTGACTTAGGCTCTCTGACAAGGGCTTCTTGTTC
ACTAAATGAACTGGACAATATTTCCCACCTTTTGAGGAAAATAGCAACCGATATCAATGAAATT
AAAGGAATGAAAGCAGCTATTTTGACAGTGGAAGCAAATCTTTTTGATTTGAATGTTAGAGTGT
CCCAAAATGAAGCAAAAATTTCATCTTTAGAGGTTAAAATGAATGAATATTTAACATCAACATC
TGAATGCAGCAGACAGTTGGAAGATTTTGAAGAGAGAATAGAGTTTGAGTCGCAGTCAAAGACT
ACTGATGTAAAAATAATTGGCTTCCTAACCAATGTTGAGAAAGGAACTCAACAGAGGCAATTGT
TATCCCGACTGCAAATTGATCCAGTAACGGTAGACACAATGGAGCTGAGTCAAGCCGAGATGAC
TGACCTGAGTGTGGCACAGAAACCAGAAAAACTCCTGGAGCGCTGCAAGTACTGGCCTGCTTGT
AAAAATGGGGATGAGTGTGTGTACCATCACCCCATTTCACCTTGCAAAGCCTTTCCCAACTGTA
AATTTGCTGAGAAATGTTTGTTTGTGCATCCAAATTGTAAATATGACGCAAAGTGTACTAAAGC
AGATTGTCCCTTCACTCACATGAGTAGAAGAGGTCCAGTACTGACTCCAAAACCAGTGTCGTCA
CCAGCGCCATCTTCTAATGGCCAGCTCTGCCGTTACTTCCCTGCCTGTAAGAAAATGGAGTGTC
CCTTCTACCACCCCAAACACTGTAGGTTTAATACCCAGTGTACAAGACCAGACTGTACGTTTTA
TCACCCCACTATTACTGTGCCACCAAGACATGCCTTGAAATGGATTCGACCTCAAACCAGTGAA
TGATGCCCTAGTCCTACCTGGCAGAAGATCATGCAGTTTGAAAGCTTCCGTCTTCTGATGAGAG
ATGTTCTACAGAACTTGTCACGTCTTTGAAATTTAGAATATATTGCTTTCATAATATGAATTTT
ACTGCCCAACTGAAGTGTCTAATTTTTCAAATTTGTAAGTTTATTAAGTGGTTTCAACCTTTTT
TGTTTGTTCGTTTTGACTATGAAAAAGACAGTTTAAAGAAAAGCCAATTCTATTAAACACTGCG
GCATGTTTGTA

hide sequence

RefSeq Acc Id:

XM_039111767 ⟹ XP_038967695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,736,242 - 123,772,922 (+)	NCBI
mRatBN7.2	6	118,006,442 - 118,044,133 (+)	NCBI

RefSeq Acc Id:

XM_039111768 ⟹ XP_038967696

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,736,124 - 123,771,633 (+)	NCBI
mRatBN7.2	6	118,006,420 - 118,042,044 (+)	NCBI

RefSeq Acc Id:

XM_039111771 ⟹ XP_038967699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,736,120 - 123,771,633 (+)	NCBI
mRatBN7.2	6	118,006,420 - 118,042,044 (+)	NCBI

RefSeq Acc Id:

XM_039111772 ⟹ XP_038967700

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,757,028 - 123,772,922 (+)	NCBI
mRatBN7.2	6	118,025,456 - 118,044,480 (+)	NCBI

RefSeq Acc Id:

XM_063261539 ⟹ XP_063117609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	123,757,163 - 123,772,922 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001029123	(Get FASTA)	NCBI Sequence Viewer
	NP_001421145	(Get FASTA)	NCBI Sequence Viewer
	NP_001421146	(Get FASTA)	NCBI Sequence Viewer
	NP_001421147	(Get FASTA)	NCBI Sequence Viewer
	NP_001421148	(Get FASTA)	NCBI Sequence Viewer
	NP_001421149	(Get FASTA)	NCBI Sequence Viewer
	NP_001421150	(Get FASTA)	NCBI Sequence Viewer
	NP_001421151	(Get FASTA)	NCBI Sequence Viewer
	NP_620275	(Get FASTA)	NCBI Sequence Viewer
	XP_008762960	(Get FASTA)	NCBI Sequence Viewer
	XP_008762961	(Get FASTA)	NCBI Sequence Viewer
	XP_008762962	(Get FASTA)	NCBI Sequence Viewer
	XP_038967695	(Get FASTA)	NCBI Sequence Viewer
	XP_038967696	(Get FASTA)	NCBI Sequence Viewer
	XP_038967699	(Get FASTA)	NCBI Sequence Viewer
	XP_038967700	(Get FASTA)	NCBI Sequence Viewer
	XP_063117609	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87712	(Get FASTA)	NCBI Sequence Viewer
	ABC02875	(Get FASTA)	NCBI Sequence Viewer
	BAB40453	(Get FASTA)	NCBI Sequence Viewer
	BAC76890	(Get FASTA)	NCBI Sequence Viewer
	BAC76891	(Get FASTA)	NCBI Sequence Viewer
	BAC76892	(Get FASTA)	NCBI Sequence Viewer
	EDL81693	(Get FASTA)	NCBI Sequence Viewer
	EDL81694	(Get FASTA)	NCBI Sequence Viewer
	EDL81695	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000047580
	ENSRNOP00000073344
	ENSRNOP00000084418
	ENSRNOP00000102435
GenBank Protein	Q7TMD5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001029123 ⟸ NM_001033951
- Peptide Label:	isoform 1
- UniProtKB:	Q99NC1 (UniProtKB/Swiss-Prot), Q7TSK6 (UniProtKB/Swiss-Prot), Q7TMD5 (UniProtKB/Swiss-Prot), D4A652 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTIRFTV WLHGVLDKLRSVTTEPSSLKSPDTSIFDSNVPSNKSSFSRGDERRHEAAIPPLAVSSSRPEKRD SRVSTSSQEHKSTNVRHSYDDGASTRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQEN SLSQKKPTVTLTYGSSRPSIEIYRPPASRNADTGTHLNRPQLQQQQSSTHTAKQLDGQSSQVYE AGRLCEPEVLGSVEDTYSPFFRNNLDKMNIEEENFRKRKLPVVSSVVKVKRFSHDGEEEEEDED YGTRVGSLSSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYPAVPQKQTLPVA PRTRTSQEEVLAEMVQGQNRAPRISPPVKEEEAKGDNAEKIEGTQQRQLLSRLQIDPVTVDTME LSQDYYDMESMVHADTRSFILKKPKLSEEIVVTPNQDSGMKTADALRVLSGHLMQTRDLVQPDK PASPKFIVTLDGVPSPPGYMSDQEEEMCFEGMKPVNQTSASNKGLRGLLHPQQLHLLSRQLEDP DGSFSNAEMTDLSVAQKPEKLLERCKYWPACKNGDECVYHHPISPCKAFPNCKFAEKCLFVHPN CKYDAKCTKADCPFTHMSRRGPVLTPKPAVSSPAPSSNGQFCRYFPACKKMECPFYHPKHCRFN TQCTRPDCTFYHPTITVPPRHALKWIRPQTSE hide sequence

RefSeq Acc Id:	NP_620275 ⟸ NM_138920
- Peptide Label:	isoform 2
- UniProtKB:	A0A8I6AN22 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTIRFTV WLHGVLDKLRSVTTEPSSLKSPDTSIFDSNVPSNKSSFSRGDERRHEAAIPPLAVSSSRPEKRD SRVSTSSQEHKSTNVRHSYDDGASTRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQEN SLSQKKPTVTLTYGSSRPSIEIYRPPASRNADTGTHLNRPQLQQQQSSTHTAKQLDGQSSQVYE AGRLCEPEVLGSVEDTYSPFFRNNLDKMNIEEENFRKRKLPVVSSVVKVKRFSHDGEEEEEDED YGTRVGSLSSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYPAVPQKQTLPVA PRTRTSQEEVLAEMVQGQNRAPRISPPVKEEEAKGDNAEKIEGTQQRQLLSRLQIDPVTVDTME LSQAEMTDLSVAQKPEKLLERCKYWPACKNGDECVYHHPISPCKAFPNCKFAEKCLFVHPNCKY DAKCTKADCPFTHMSRRGPVLTPKPAVSSPAPSSNGQFCRYFPACKKMECPFYHPKHCRFNTQC TRPDCTFYHPTITVPPRHALKWIRPQTSE hide sequence

RefSeq Acc Id:

XP_008762960 ⟸ XM_008764738

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTIRFTV
WLHGVLDKLRSVTTEPSSLKSPDTSIFDSNVPSNKSSFSRGDERRHEAAIPPLAVSSSRPEKRD
SRVSTSSQEHKSTNVRHSYDDGASTRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQEN
SLSQKKPTVTLTYGSSRPSIEIYRPPASRNADTGTHLNRPQLQQQQSSTHTAKQLDGQSSQVYE
AGRLCEPEVLGSVEDTYSPFFRNNLDKMNIEEENFRKRKLPVVSSVVKVKRFSHDGEEEEEDED
YGTRVGSLSSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYPAVPQKQTLPVA
PRTRTSQEEVLAEMVQGQNRAPRISPPVKEEEAKGDNAEKIEGTQQRQLLSRLQIDPVTVDTME
LSQDYYDMESMVHADTRSFILKKPKLSEEIVVTPNQDSGMKTADALRVLSGHLMQTRDLVQPDK
PASPKFIVTLDGVPSPPGYMSDQEEEMCFEGMKPVNQTSASNKGLRGLLHPQQLHLLSRQLEDP
DGSFSNAEMTDLSVAQKPEKLLERCKYWPACKNGDECVYHHPISPCKAFPNCKFAEKCLFVHPN
CKYDAKCTKADCPFTHMSRRGPVLTPKPVSSPAPSSNGQLCRYFPACKKMECPFYHPKHCRFNT
QCTRPDCTFYHPTITVPPRHALKWIRPQTSE

hide sequence

RefSeq Acc Id:

XP_008762961 ⟸ XM_008764739

- Peptide Label:

isoform X4

- Sequence:

show sequence

MEIGTEISRKIRSAIKGKLQELGAYVDEELPDYIMVMVANKKSQDQMTEDLSLFLGNNTIRFTV
WLHGVLDKLRSVTTEPSSLKSPDTSIFDSNVPSNKSSFSRGDERRHEAAIPPLAVSSSRPEKRD
SRVSTSSQEHKSTNVRHSYDDGASTRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFVQEN
SLSQKKPTVTLTYGSSRPSIEIYRPPASRNADTGTHLNRPQLQQQQSSTHTAKQLDGQSSQVYE
AGRLCEPEVLGSVEDTYSPFFRNNLDKMNIEEENFRKRKLPVVSSVVKVKRFSHDGEEEEEDED
YGTRVGSLSSSVSVPAKPERRPSLPPSKQANKNLILKAISEAQESVTKTTNYPAVPQKQTLPVA
PRTRTSQEEVLAEMVQGQNRAPRISPPVKEEEAKGDNAEKIEGTQQRQLLSRLQIDPVTVDTME
LSQAEMTDLSVAQKPEKLLERCKYWPACKNGDECVYHHPISPCKAFPNCKFAEKCLFVHPNCKY
DAKCTKADCPFTHMSRRGPVLTPKPVSSPAPSSNGQLCRYFPACKKMECPFYHPKHCRFNTQCT
RPDCTFYHPTITVPPRHALKWIRPQTSE

hide sequence

RefSeq Acc Id:

XP_008762962 ⟸ XM_008764740

- Peptide Label:

isoform X8

- Sequence:

show sequence

MKMSSRFSSPSLPVFLSPEPADLGSLTRASCSLNELDNISHLLRKIATDINEIKGMKAAILTVE
ANLFDLNVRVSQNEAKISSLEVKMNEYLTSTSECSRQLEDFEERIEFESQSKTTDVKIIGFLTN
VEKGTQQRQLLSRLQIDPVTVDTMELSQAEMTDLSVAQKPEKLLERCKYWPACKNGDECVYHHP
ISPCKAFPNCKFAEKCLFVHPNCKYDAKCTKADCPFTHMSRRGPVLTPKPVSSPAPSSNGQLCR
YFPACKKMECPFYHPKHCRFNTQCTRPDCTFYHPTITVPPRHALKWIRPQTSE

hide sequence

Ensembl Acc Id:

ENSRNOP00000073344 ⟸ ENSRNOT00000078050

Ensembl Acc Id:

ENSRNOP00000047580 ⟸ ENSRNOT00000040440

Ensembl Acc Id:

ENSRNOP00000035319 ⟸ ENSRNOT00000039509

RefSeq Acc Id:	XP_038967696 ⟸ XM_039111768
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038967699 ⟸ XM_039111771
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AN22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038967695 ⟸ XM_039111767
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038967700 ⟸ XM_039111772
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000097024 ⟸ ENSRNOT00000100630

Ensembl Acc Id:

ENSRNOP00000084418 ⟸ ENSRNOT00000117615

RefSeq Acc Id:	XP_063117609 ⟸ XM_063261539
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000102435 ⟸ ENSRNOT00000149129

Protein Domains

C3H1-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7TMD5-F1-model_v2	AlphaFold	Q7TMD5	1-736	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694770

Promoter ID:

EPDNEW_R5294

Type:

initiation region

Name:

Zc3h14_1

Description:

zinc finger CCCH type containing 14

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	122,729,886 - 122,729,946	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621850	AgrOrtholog
BioCyc Gene	G2FUF-36534	BioCyc
Ensembl Genes	ENSRNOG00000004083	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000040440	ENTREZGENE
	ENSRNOT00000078050	ENTREZGENE
	ENSRNOT00000117615	ENTREZGENE
	ENSRNOT00000149129	ENTREZGENE
Gene3D-CATH	4.10.1000.30	UniProtKB/Swiss-Prot
	4.10.1000.40	UniProtKB/Swiss-Prot
	PWI domain	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7317608	IMAGE-MGC_LOAD
InterPro	Nab2/ZC3H14	UniProtKB/Swiss-Prot
	Znf_CCCH	UniProtKB/Swiss-Prot
KEGG Report	rno:192359	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105318	IMAGE-MGC_LOAD
NCBI Gene	192359	ENTREZGENE
PANTHER	PTHR14738	UniProtKB/Swiss-Prot
	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14	UniProtKB/Swiss-Prot
Pfam	zf-CCCH_2	UniProtKB/Swiss-Prot
PhenoGen	Zc3h14	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004083	RatGTEx
UniProt	A0A0G2K596	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A1Y3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AN22	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L1Q6_RAT	UniProtKB/TrEMBL
	D4A652	ENTREZGENE, UniProtKB/TrEMBL
	D4A7G0	ENTREZGENE, UniProtKB/TrEMBL
	Q7TMD5	ENTREZGENE
	Q7TSK6	ENTREZGENE
	Q99NC1	ENTREZGENE
	ZC3HE_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q7TSK6	UniProtKB/Swiss-Prot
	Q99NC1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-25	Zc3h14	zinc finger CCCH type containing 14	Npuk68	nuclear protein UKp68	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Npuk68	nuclear protein UKp68	Loc192359		Symbol updated	1299863	APPROVED
2002-08-07	Loc192359	nuclear protein UKp68			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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