Atxn10 (ataxin 10) - Rat Genome Database

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Gene: Atxn10 (ataxin 10) Rattus norvegicus
Analyze
Symbol: Atxn10
Name: ataxin 10
RGD ID: 621813
Description: Enables enzyme binding activity and identical protein binding activity. Predicted to be involved in neuron projection development and regulation of cytokinesis. Predicted to act upstream of or within cilium assembly. Predicted to be located in several cellular components, including microtubule organizing center; midbody; and neuronal cell body. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 10. Orthologous to human ATXN10 (ataxin 10); INTERACTS WITH 2,6-dinitrotoluene; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ataxin 10 homolog; ataxin 10 homolog (human); ataxin-10; neuronal beta-catenin-like protein; Sca10; spinocerebellar ataxia 10 homolog; spinocerebellar ataxia 10 homolog (human); spinocerebellar ataxia type 10 protein homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,321,516 - 118,444,967 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7118,319,490 - 118,445,636 (+)EnsemblGRCr8
mRatBN7.27116,441,768 - 116,565,093 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,441,613 - 116,565,087 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7118,192,367 - 118,315,658 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,418,105 - 120,541,389 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,387,546 - 120,510,827 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,228,416 - 126,351,728 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,228,295 - 126,351,634 (+)Ensemblrn6Rnor6.0
Rnor_5.07125,942,296 - 126,065,030 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47123,338,625 - 123,461,768 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7112,739,769 - 112,861,083 (+)NCBICelera
RGSC_v3.17123,372,764 - 123,495,995 (+)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
clozapine  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (ISO)
dimethyl sulfoxide  (ISO)
diuron  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fumonisin B1  (ISO)
gentamycin  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
okadaic acid  (ISO)
ozone  (EXP)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IEA,ISO,ISS)
ciliary basal body  (IEA,ISO,ISS)
cytoplasm  (IEA,ISO,ISS)
cytosol  (IBA)
dendrite  (IEA,ISO)
midbody  (IEA,ISO,ISS)
neuronal cell body  (IEA,ISO)
perinuclear region of cytoplasm  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Ataxin-10, the spinocerebellar ataxia type 10 neurodegenerative disorder protein, is essential for survival of cerebellar neurons. Marz P, etal., J Biol Chem. 2004 Aug 20;279(34):35542-50. Epub 2004 Jun 16.
3. Ataxin-10 interacts with O-linked beta-N-acetylglucosamine transferase in the brain. Marz P, etal., J Biol Chem. 2006 Jul 21;281(29):20263-70. Epub 2006 May 18.
4. Large expansion of the ATTCT pentanucleotide repeat in spinocerebellar ataxia type 10. Matsuura T, etal., Nat Genet. 2000 Oct;26(2):191-4.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. Mapping of a new autosomal dominant spinocerebellar ataxia to chromosome 22. Zu L, etal., Am J Hum Genet 1999 Feb;64(2):594-9.
Additional References at PubMed
PMID:15489334   PMID:16385455   PMID:16498633   PMID:19946888   PMID:21565611   PMID:22871113   PMID:23462879   PMID:23580065  


Genomics

Comparative Map Data
Atxn10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,321,516 - 118,444,967 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7118,319,490 - 118,445,636 (+)EnsemblGRCr8
mRatBN7.27116,441,768 - 116,565,093 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,441,613 - 116,565,087 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7118,192,367 - 118,315,658 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,418,105 - 120,541,389 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,387,546 - 120,510,827 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,228,416 - 126,351,728 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,228,295 - 126,351,634 (+)Ensemblrn6Rnor6.0
Rnor_5.07125,942,296 - 126,065,030 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47123,338,625 - 123,461,768 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7112,739,769 - 112,861,083 (+)NCBICelera
RGSC_v3.17123,372,764 - 123,495,995 (+)NCBI
Cytogenetic Map7q34NCBI
ATXN10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382245,671,834 - 45,845,307 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2245,671,798 - 45,845,307 (+)Ensemblhg38GRCh38
GRCh372246,067,714 - 46,241,187 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362244,446,351 - 44,619,493 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342244,388,223 - 44,561,366NCBI
Celera2229,980,308 - 30,153,770 (+)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2229,013,059 - 29,186,515 (+)NCBIHuRef
CHM1_12246,026,781 - 46,200,302 (+)NCBICHM1_1
T2T-CHM13v2.02246,156,561 - 46,330,004 (+)NCBIT2T-CHM13v2.0
Atxn10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,220,456 - 85,348,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,220,446 - 85,347,413 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381585,336,255 - 85,463,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,336,245 - 85,463,212 (+)Ensemblmm10GRCm38
MGSCv371585,166,811 - 85,294,266 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361585,164,147 - 85,291,602 (+)NCBIMGSCv36mm8
Celera1587,465,791 - 87,593,610 (+)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.32NCBI
Atxn10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541329,981,236 - 30,104,552 (+)Ensembl
ChiLan1.0NW_00495541329,956,904 - 30,104,868 (+)NCBIChiLan1.0ChiLan1.0
ATXN10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22355,477,520 - 55,666,267 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,192,039 - 58,364,624 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02226,556,201 - 26,729,098 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12244,733,466 - 44,906,582 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2244,733,466 - 44,906,582 (+)EnsemblpanPan2panpan1.1
ATXN10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11020,277,339 - 20,440,749 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1020,257,974 - 20,440,704 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1020,199,107 - 20,362,464 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01021,011,042 - 21,175,060 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1021,009,421 - 21,174,896 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11020,730,687 - 20,894,020 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01021,044,002 - 21,207,495 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01021,224,981 - 21,388,522 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atxn10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049453,976,894 - 4,097,415 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366293,976,905 - 4,097,055 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366293,976,894 - 4,097,415 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATXN10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,637,111 - 3,798,201 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.153,637,794 - 3,798,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25809,349 - 1,027,816 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATXN10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11928,128,644 - 28,307,061 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1928,128,688 - 28,308,617 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604597,020,261 - 97,206,547 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atxn10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247523,902,696 - 4,061,065 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247523,901,834 - 4,061,074 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Atxn10
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11254,700,521 - 254,822,642 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Atxn10
640 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:35
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000021071
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
RH129389  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27116,564,869 - 116,565,051 (+)MAPPERmRatBN7.2
Rnor_6.07126,351,505 - 126,351,686NCBIRnor6.0
Rnor_5.07126,064,807 - 126,064,988UniSTSRnor5.0
RGSC_v3.47123,461,545 - 123,461,726UniSTSRGSC3.4
Celera7112,860,860 - 112,861,041UniSTS
RH 3.4 Map7908.6UniSTS
Cytogenetic Map7q34UniSTS
RH134020  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27116,543,315 - 116,543,502 (+)MAPPERmRatBN7.2
Rnor_6.07126,329,957 - 126,330,143NCBIRnor6.0
Rnor_5.07126,043,838 - 126,044,024UniSTSRnor5.0
RGSC_v3.47123,440,172 - 123,440,358UniSTSRGSC3.4
Celera7112,839,879 - 112,840,065UniSTS
RH 3.4 Map7912.3UniSTS
Cytogenetic Map7q34UniSTS
BF386139  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27116,555,377 - 116,555,585 (+)MAPPERmRatBN7.2
Rnor_6.07126,342,015 - 126,342,222NCBIRnor6.0
Rnor_5.07126,055,317 - 126,055,524UniSTSRnor5.0
RGSC_v3.47123,452,055 - 123,452,262UniSTSRGSC3.4
Celera7112,851,372 - 112,851,579UniSTS
RH 3.4 Map7908.6UniSTS
Cytogenetic Map7q34UniSTS
BF404216  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27116,526,014 - 116,526,204 (+)MAPPERmRatBN7.2
Rnor_6.07126,312,659 - 126,312,848NCBIRnor6.0
Rnor_5.07126,026,540 - 126,026,729UniSTSRnor5.0
RGSC_v3.47123,422,874 - 123,423,063UniSTSRGSC3.4
Celera7112,823,945 - 112,824,134UniSTS
RH 3.4 Map7907.8UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021071   ⟹   ENSRNOP00000021071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7118,319,490 - 118,445,636 (+)Ensembl
mRatBN7.2 Ensembl7116,441,613 - 116,565,077 (+)Ensembl
Rnor_6.0 Ensembl7126,228,295 - 126,351,634 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094792   ⟹   ENSRNOP00000082915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7118,321,546 - 118,444,576 (+)Ensembl
mRatBN7.2 Ensembl7116,441,613 - 116,564,745 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101099   ⟹   ENSRNOP00000076778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7116,441,658 - 116,565,087 (+)Ensembl
RefSeq Acc Id: NM_133313   ⟹   NP_579847
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87118,321,656 - 118,444,967 (+)NCBI
mRatBN7.27116,441,768 - 116,565,093 (+)NCBI
Rnor_6.07126,228,416 - 126,351,728 (+)NCBI
Rnor_5.07125,942,296 - 126,065,030 (+)NCBI
RGSC_v3.47123,338,625 - 123,461,768 (+)RGD
Celera7112,739,769 - 112,861,083 (+)RGD
Sequence:
RefSeq Acc Id: XM_063262941   ⟹   XP_063119011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87118,321,516 - 118,444,967 (+)NCBI
Protein Sequences
Protein RefSeqs NP_579847 (Get FASTA)   NCBI Sequence Viewer  
  XP_063119011 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH62087 (Get FASTA)   NCBI Sequence Viewer  
  CAC16214 (Get FASTA)   NCBI Sequence Viewer  
  EDM15580 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021071
  ENSRNOP00000082915
GenBank Protein Q9ER24 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_579847   ⟸   NM_133313
- UniProtKB: Q9ER24 (UniProtKB/Swiss-Prot),   A6HTE2 (UniProtKB/TrEMBL),   A0A8L2QB12 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021071   ⟸   ENSRNOT00000021071
Ensembl Acc Id: ENSRNOP00000082915   ⟸   ENSRNOT00000094792
Ensembl Acc Id: ENSRNOP00000076778   ⟸   ENSRNOT00000101099
RefSeq Acc Id: XP_063119011   ⟸   XM_063262941
- Peptide Label: isoform X1
- UniProtKB: A0A8L2QB12 (UniProtKB/TrEMBL),   A0A8I5ZUU4 (UniProtKB/TrEMBL)
Protein Domains
Ataxin-10

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ER24-F1-model_v2 AlphaFold Q9ER24 1-475 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695567
Promoter ID:EPDNEW_R6091
Type:initiation region
Name:Atxn10_1
Description:ataxin 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07126,228,403 - 126,228,463EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621813 AgrOrtholog
BioCyc Gene G2FUF-32548 BioCyc
Ensembl Genes ENSRNOG00000014637 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000021071 ENTREZGENE
  ENSRNOT00000094792 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621521 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  Ataxin-10/CTR86_families UniProtKB/Swiss-Prot
  Ataxin-10_domain UniProtKB/Swiss-Prot
KEGG Report rno:170821 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72277 IMAGE-MGC_LOAD
NCBI Gene 170821 ENTREZGENE
PANTHER ATAXIN-10 UniProtKB/Swiss-Prot
  ATAXIN-10 UniProtKB/Swiss-Prot
Pfam Atx10homo_assoc UniProtKB/Swiss-Prot
PhenoGen Atxn10 PhenoGen
RatGTEx ENSRNOG00000014637 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot
UniProt A0A8I5ZUU4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QB12 ENTREZGENE, UniProtKB/TrEMBL
  A6HTE2 ENTREZGENE, UniProtKB/TrEMBL
  ATX10_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Atxn10  ataxin 10    ataxin 10 homolog (human)  Name updated 1299863 APPROVED
2005-01-20 Atxn10  ataxin 10 homolog (human)  Sca10  spinocerebellar ataxia 10 homolog (human)  Symbol and Name updated 1299863 APPROVED
2002-08-07 Sca10  spinocerebellar ataxia 10 homolog (human)      Symbol and Name status set to provisional 70820 PROVISIONAL