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Gene: Stau1 (staufen double-stranded RNA binding protein 1) Rattus norvegicus

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Symbol:

Stau1

Name:

staufen double-stranded RNA binding protein 1

RGD ID:

621778

Description:

Enables double-stranded RNA binding activity and protein phosphatase 1 binding activity. Involved in cellular response to oxidative stress; modification of postsynaptic structure; and positive regulation of long-term synaptic potentiation. Located in neuronal cell body. Is active in glutamatergic synapse. Orthologous to human STAU1 (staufen double-stranded RNA binding protein 1); INTERACTS WITH 17beta-estradiol; 3-chloropropane-1,2-diol; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

double-stranded RNA-binding protein Staufen homolog 1; MGC124588; Stau; staufen (Drosophila, RNA-binding protein); staufen RNA binding protein homolog 1; staufen RNA binding protein homolog 1 (Drosophila)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STAU1 (staufen double-stranded RNA binding protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Stau1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stau1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STAU1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STAU1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Stau1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STAU1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STAU1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stau1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Stau1 (staufen double-stranded RNA binding protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	STAU1 (staufen double-stranded RNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Stau1 (staufen double-stranded RNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	stau1 (staufen double-stranded RNA binding protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	stau-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	stau-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	stau	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	stau	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stau1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	stau1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,099,053 - 176,144,947 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	176,099,053 - 176,144,947 (-)	Ensembl				GRCr8
mRatBN7.2	3	155,680,000 - 155,725,969 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	155,680,000 - 155,725,909 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	159,481,477 - 159,527,221 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	167,980,447 - 168,026,194 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	165,722,139 - 165,767,900 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	163,703,204 - 163,748,996 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	163,703,204 - 163,748,996 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	169,863,711 - 169,909,847 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	158,101,209 - 158,147,105 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	154,261,496 - 154,307,216 (-)	NCBI		Celera
RGSC_v3.1	3	158,007,244 - 158,053,128 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atherosclerosis (ISO)

myotonic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,6-dimethoxyphenol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

copper(II) chloride (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

disodium selenite (ISO)

diuron (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

fenthion (ISO)

folic acid (ISO)

FR900359 (ISO)

furfural (ISO)

GSK-J4 (ISO)

indometacin (ISO)

isoniazide (ISO)

ivermectin (ISO)

methidathion (ISO)

nitrates (ISO)

Nivalenol (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

pirinixic acid (ISO)

Salinomycin (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

anterograde dendritic transport of messenger ribonucleoprotein complex (IBA)

cellular response to oxidative stress (IEP)

dendritic transport (IEA)

dendritic transport of messenger ribonucleoprotein complex (ISO)

germ cell development (IBA)

intracellular mRNA localization (IBA,ISO)

modification of postsynaptic structure (IDA,IMP)

modulation of chemical synaptic transmission (IDA,IMP)

positive regulation by virus of viral protein levels in host cell (IEA,ISO)

positive regulation of long-term synaptic potentiation (IMP)

positive regulation of viral genome replication (IEA,ISO)

protein localization to synapse (IBA)

Cellular Component

cell body (IEA,ISO)

cytoplasm (IEA,ISO)

cytoplasmic ribonucleoprotein granule (IEA,ISO)

cytoplasmic stress granule (IBA,IEA,ISO)

cytosol (IEA,ISO)

dendrite (IEA,ISO)

dendrite cytoplasm (IEA)

endoplasmic reticulum (IEA,ISO)

glutamatergic synapse (IDA,IMP)

neuron projection (IBA,IEA,ISO)

neuronal cell body (IBA,IDA)

plasma membrane (IBA,IEA,ISO)

protein-containing complex (IEA)

ribonucleoprotein complex (ISO)

rough endoplasmic reticulum (IEA)

Molecular Function

double-stranded RNA binding (IBA,IDA)

mRNA binding (IBA)

protein binding (ISO)

protein phosphatase 1 binding (IPI)

RNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	The mammalian staufen protein localizes to the somatodendritic domain of cultured hippocampal neurons: implications for its involvement in mRNA transport.	Kiebler MA, etal., J Neurosci 1999 Jan 1;19(1):288-97.
4.	Staufen 2 regulates mGluR long-term depression and Map1b mRNA distribution in hippocampal neurons.	Lebeau G, etal., Learn Mem. 2011 Apr 20;18(5):314-26. doi: 10.1101/lm.2100611. Print 2011.
5.	mRNA binding protein staufen 1-dependent regulation of pyramidal cell spine morphology via NMDA receptor-mediated synaptic plasticity.	Lebeau G, etal., Mol Brain. 2011 Jun 2;4:22. doi: 10.1186/1756-6606-4-22.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Two rat brain staufen isoforms differentially bind RNA.	Monshausen M, etal., J Neurochem 2001 Jan;76(1):155-65.
8.	The RNA-binding protein Staufen from rat brain interacts with protein phosphatase-1.	Monshausen M, etal., J Neurochem. 2002 May;81(3):557-64.
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
14.	Staufen recruitment into stress granules does not affect early mRNA transport in oligodendrocytes.	Thomas MG, etal., Mol Biol Cell. 2005 Jan;16(1):405-20. Epub 2004 Nov 3.
15.	Aberrantly Methylated-Differentially Expressed Genes Identify Novel Atherosclerosis Risk Subtypes.	Xue Y, etal., Front Genet. 2020 Dec 14;11:569572. doi: 10.3389/fgene.2020.569572. eCollection 2020.

Additional References at PubMed

PMID:12843282	PMID:15121898	PMID:15312650	PMID:18316402	PMID:19029303	PMID:19193871	PMID:19199708	PMID:19825938	PMID:19946888	PMID:22681889	PMID:22978549	PMID:23106098
PMID:23907398	PMID:34022264

Genomics

Comparative Map Data

Stau1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,099,053 - 176,144,947 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	176,099,053 - 176,144,947 (-)	Ensembl				GRCr8
mRatBN7.2	3	155,680,000 - 155,725,969 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	155,680,000 - 155,725,909 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	159,481,477 - 159,527,221 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	167,980,447 - 168,026,194 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	165,722,139 - 165,767,900 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	163,703,204 - 163,748,996 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	163,703,204 - 163,748,996 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	169,863,711 - 169,909,847 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	158,101,209 - 158,147,105 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	154,261,496 - 154,307,216 (-)	NCBI		Celera
RGSC_v3.1	3	158,007,244 - 158,053,128 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

STAU1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	49,113,339 - 49,219,295 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	49,113,338 - 49,188,417 (-)	Ensembl			hg38	GRCh38
GRCh37	20	47,729,876 - 47,835,832 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	47,163,283 - 47,238,311 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	47,163,467 - 47,238,311	NCBI
Celera	20	44,434,510 - 44,509,526 (-)	NCBI		Celera
Cytogenetic Map	20	q13.13	NCBI
HuRef	20	44,479,031 - 44,553,753 (-)	NCBI		HuRef
CHM1_1	20	47,633,937 - 47,708,944 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	50,882,825 - 50,988,811 (-)	NCBI		T2T-CHM13v2.0

Stau1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	166,789,469 - 166,838,253 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	166,789,469 - 166,838,219 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	166,947,549 - 166,996,315 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	166,947,549 - 166,996,299 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	166,773,641 - 166,821,778 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	166,639,478 - 166,687,504 (-)	NCBI		MGSCv36	mm8
Celera	2	172,887,550 - 172,935,664 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	87.22	NCBI

Stau1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	8,971,582 - 9,003,647 (+)	Ensembl
ChiLan1.0	NW_004955445	8,971,585 - 9,003,647 (+)	NCBI	ChiLan1.0	ChiLan1.0

STAU1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	54,856,184 - 54,930,060 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	54,849,291 - 54,923,169 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	45,452,639 - 45,526,512 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	46,517,772 - 46,581,524 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	46,517,772 - 46,578,024 (-)	Ensembl			panPan2	panpan1.1

STAU1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	35,816,224 - 35,868,791 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	35,817,664 - 35,860,021 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	35,059,029 - 35,113,351 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	36,520,996 - 36,575,325 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	36,521,000 - 36,575,346 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	35,762,100 - 35,816,354 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	35,896,079 - 35,950,349 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	36,437,137 - 36,491,471 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Stau1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	189,595,190 - 189,649,850 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	5,058,692 - 5,103,528 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	5,058,682 - 5,103,493 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STAU1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	50,804,962 - 50,869,223 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	50,804,959 - 50,903,155 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	57,265,267 - 57,282,086 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STAU1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	14,804,750 - 14,879,067 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	14,804,791 - 14,878,838 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	63,300,287 - 63,379,235 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stau1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	6,172,762 - 6,229,487 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	6,173,160 - 6,229,487 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Stau1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	150,978,325 - 151,024,992 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	155
Count of miRNA genes:	120
Interacting mature miRNAs:	135
Transcripts:	ENSRNOT00000010633
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	166376089	177728348	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Markers in Region

RH128700

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	155,680,057 - 155,680,225 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	163,703,262 - 163,703,429	NCBI	Rnor6.0
Rnor_5.0	3	169,863,769 - 169,863,936	UniSTS	Rnor5.0
RGSC_v3.4	3	158,101,267 - 158,101,434	UniSTS	RGSC3.4
Celera	3	154,261,554 - 154,261,721	UniSTS
RH 3.4 Map	2	1241.2	UniSTS
Cytogenetic Map	3	q42	UniSTS

RH138783

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	155,680,889 - 155,681,066 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	163,704,094 - 163,704,270	NCBI	Rnor6.0
Rnor_5.0	3	169,864,601 - 169,864,777	UniSTS	Rnor5.0
RGSC_v3.4	3	158,102,099 - 158,102,275	UniSTS	RGSC3.4
Celera	3	154,262,386 - 154,262,562	UniSTS
RH 3.4 Map	3	1471.1	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109907	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF227200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF290989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ010200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC101858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DN932990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010633 ⟹ ENSRNOP00000010633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	176,099,053 - 176,144,947 (-)	Ensembl
mRatBN7.2 Ensembl	3	155,680,000 - 155,725,909 (-)	Ensembl
Rnor_6.0 Ensembl	3	163,703,204 - 163,748,996 (-)	Ensembl

RefSeq Acc Id:

NM_001109907 ⟹ NP_001103377

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,099,053 - 176,144,947 (-)	NCBI
mRatBN7.2	3	155,680,000 - 155,725,909 (-)	NCBI
Rnor_6.0	3	163,703,204 - 163,748,996 (-)	NCBI
Rnor_5.0	3	169,863,711 - 169,909,847 (-)	NCBI
RGSC_v3.4	3	158,101,209 - 158,147,105 (-)	RGD
Celera	3	154,261,496 - 154,307,216 (-)	RGD

Sequence:

show sequence

GTCGCGTCTGTGTGCGCTCCCCCTTCTTCTGACCCCCGGCCCGGCGGCGCCCGCCTTCTCCGCA
GCCACTCCGTCTCTTCCCTCCCCCGGTCTTTTTTTCCTCGCCCTCTTCTTTTGCTTTTCTTCCT
CGCCGCCGCCCAATACCGCCGGCCCCGGGACGAGCTCTGGGGAAGCAGCCAGAAAGTATAGCTT
CTACCATTGAGCTCAATGCACTGTGCGTGAAACTGGAAAGAAAACCAATGTATAAGCCCGTGGA
CCCCCACTCTCGGATGCAGTCCACCTACAGCTATGGCATGCGTGGAGGTGCCTATCCCCCCAGA
TACTTTTACCCATTTCCAGTTCCACCGTTACTCTACCAAGTTGAGCTCTCCGTGGGAGGACAGC
AGTTTAATGGGAAGGGAAAGATGAGACCACCTGTGAAACATGATGCCACTGCCCGAGCCCTGAG
GACTCTGCAGAGTGAGCCCCTACCAGAGAGGCTAGAGGTAAATGGAAGAGAATCAGAAGAAGAA
AACCTTAATAAATCAGAAATAAGCCAAGTGTTTGAGATTGCGCTGAAGCGGAATTTGCCTGTGA
ATTTTGAGGTGGCCCGGGAGAGTGGCCCGCCACACATGAAGAACTTTGTGACCAGGGTTTCAGT
TGGGGAGTTTGTAGGGGAAGGAGAAGGGAAAAGCAAGAAGATCTCCAAGAAGAATGCGGCAAGG
GCCGTGCTGGAGCAGCTAAGGAGGCTGCCACCTCTACCTGCTGTGGAGCGAGTGAAGCCCAGAA
TCAAGAAGAAAAGTCAGCCCACCTGCAAGCTACAGACTGCCCCCGACTATGGCCAAGGGATGAA
TCCTATTAGCAGACTGGCACAGATCCAGCAGGCAAAAAAGGAGAAGGAGCCGGAGTACATGCTC
CTTACAGAACGAGGTCTTCCACGTCGCAGGGAGTTTGTGATGCAGGTGAAGGTTGGGCATCACA
CCGCAGAAGGAGCAGGTACCAATAAGAAGGTGGCCAAGCGCAATGCTGCTGAGAACATGCTGGA
GATCCTGGGGTTCAAAGTCCCCCAGGCGCAGCCTGCCAAGCCAGCACTCAAATCAGAAGAGAAG
ACTCCAGTAAAGAAACCAGGAGATGGAAGGAAAGTAACATTTTTTGAACCTAGCCCTGGGGATG
AAAATGGAACCAGTAATAAAGAGGATGAGTTCAGGATGCCCTATCTTAGCCATCAGCAGCTGCC
AGCCGGGATCCTCCCCATGGTGCCAGAGGTTGCCCAGGCTGTCGGGGTTAGTCAAGGACACCAT
ACCAAAGATTTCGCCAGGGCAGCTCCAAATCCTGCCAAGGCCACGGTAACTGCCATGATAGCCC
GAGAATTGTTGTACGGGGGCACCTCGCCCACAGCCGAGACCATTTTAAAGAGTAACATCTCTTC
AGGACATGTACCCCATGGACCTCGCACAAGACCCTCTGAGCAACTGTACTACCTTTCCAGAGCC
CAGGGATTCCAGGTTGAATACAAAGACTTCCCCAAGAACAACAAGAACGAGTGTGTATCTCTCA
TCAACTGCTCTTCACAGCCACCTCTCGTCAGCCATGGCATCGGCAAGGATGTGGAGTCCTGTCA
TGATATGGCTGCACTGAACATCTTAAAGCTGCTGTCTGAGTTGGACCAACAGAGCACAGAGATG
CCAAGGACAGGAAACGGACCAGTTTCAGCGTGCGGGAGGTGCTGAACCTATTCTGGCCATGAAC
CATTATAAAACCCAACATATATACCGAAAATACTGAGAACTGCTTTGAAAATTTGGAATTTCTG
ATAACTCCAGTGGGCCAAGACATGGTGGATAAAAAAATGTGGCAAAGAAGAAAAGGAACTGCAG
GTGGTGGCCTTGGTTGGGCTGGGCTGCTGGTGACGCTGTGCTCCGCCATCCACCAGGAGACCAG
CAGCTCCAGTGTCTCCAGCTTTTATTTTTGCCTCGTGACAGAGAAACGGAGAGCGTGGCCAACT
CTCACGCTGGCTTCTTCAGATTCTTTGGAAAACCGGGACAGCCACACCAGAGAGGCCTTACAGC
GGCCCCGGAGCTAAACGCACCAGAGAAAAACCAGTGCTTCCTACATGACTGACGCAACTCTGCC
ACACGTAGCACCCACCGTAACCACTGCTTTCTCTTCAACAGTGATGGATGCCTGTTAGTTCCAT
TATTCCCTTTGGTTGAGATGACACTATGTAATTTTCATTTCAGTTTCTCAGTTGCATCTACTTA
CCTAGCAGTTTAGAAACTAGTCTGAGACAGATGCTATCCAGCTATGTAACTGGCAAAGACCACA
GCCCTGTTTGGTGATGCATTCTGTGCCTCTGGCTCGGCTGGCAGTTCTGGACTTAACCACAAGA
ATCCTTGACTCCCAACCCCTTGTATAAATTGGACAGCTTAGGACTTTTAAACTTTAGGAGATCA
AAAGATTTGGTCCTTTTTAACTTTATTTTTAAGCAGCATACTTAAAAGTGAGCCTGACCTTTAC
CAGTTATAACAGATTGTCAACGGGAGAGGTTGTCACCCATTGTAACAGATTGCCAGTGGGAGGT
CACTTGAGGGAGTATTGCTCAAGGTGGCTTTTTCTACACACTACAGGACATTACCTGTGGGCCC
AGAAGACTATGGGCTGGTGTCCCTGGAGGGCCCAATACAGTCAATCCCAGCCTCCACGTAGGGA
AGGGCGACAGGTTTCCTGGTGCTGTGCTAGTGTGCACAGAGGCAGGAAGGTCTGCCGGCCTGGT
GTGGAGCATTGTGGCTCTGAGTGCAACCCTGCTGCTCCCACTCGGGGTTTAGCTGGACCTTTTC
ACCCATGGAATATAAGGAAACTTAGTCTTTGTCACCAATAAATGAGAATACTAAATTTTTTTTG
TTAATTTATTTTCAAATGTCACTACTTCTAGATCAATCTCCTTCTGGTTCATCCCCTTCCCCAC
CTTTTTTTAAAAGAAGAGAATATTTGTAATGCTTGTGATTCTGTCTGGGCAAAAATCTGAAGAT
CTAAAATCTCTTTATATTAAACTATTGATCAATAAACAGCTACTAAG

hide sequence

RefSeq Acc Id:

NM_053436 ⟹ NP_445888

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,099,053 - 176,144,947 (-)	NCBI
mRatBN7.2	3	155,680,000 - 155,725,909 (-)	NCBI
Rnor_6.0	3	163,703,204 - 163,748,996 (-)	NCBI
Rnor_5.0	3	169,863,711 - 169,909,847 (-)	NCBI
RGSC_v3.4	3	158,101,209 - 158,147,105 (-)	RGD
Celera	3	154,261,496 - 154,307,216 (-)	RGD

Sequence:

show sequence

GTCGCGTCTGTGTGCGCTCCCCCTTCTTCTGACCCCCGGCCCGGCGGCGCCCGCCTTCTCCGCA
GCCACTCCGTCTCTTCCCTCCCCCGGTCTTTTTTTCCTCGCCCTCTTCTTTTGCTTTTCTTCCT
CGCCGCCGCCCAATACCGCCGGCCCCGGGACGAGCTCTGGGGAAGCAGCCAGAAAGTATAGCTT
CTACCATTGAGCTCAATGCACTGTGCGTGAAACTGGAAAGAAAACCAATGTATAAGCCCGTGGA
CCCCCACTCTCGGATGCAGTCCACCTACAGCTATGGCATGCGTGGAGGTGCCTATCCCCCCAGA
TACTTTTACCCATTTCCAGTTCCACCGTTACTCTACCAAGTTGAGCTCTCCGTGGGAGGACAGC
AGTTTAATGGGAAGGGAAAGATGAGACCACCTGTGAAACATGATGCCACTGCCCGAGCCCTGAG
GACTCTGCAGAGTGAGCCCCTACCAGAGAGGCTAGAGGTAAATGGAAGAGAATCAGAAGAAGAA
AACCTTAATAAATCAGAAATAAGCCAAGTGTTTGAGATTGCGCTGAAGCGGAATTTGCCTGTGA
ATTTTGAGTCTTTCCCTCTGACACAGGTGGCCCGGGAGAGTGGCCCGCCACACATGAAGAACTT
TGTGACCAGGGTTTCAGTTGGGGAGTTTGTAGGGGAAGGAGAAGGGAAAAGCAAGAAGATCTCC
AAGAAGAATGCGGCAAGGGCCGTGCTGGAGCAGCTAAGGAGGCTGCCACCTCTACCTGCTGTGG
AGCGAGTGAAGCCCAGAATCAAGAAGAAAAGTCAGCCCACCTGCAAGCTACAGACTGCCCCCGA
CTATGGCCAAGGGATGAATCCTATTAGCAGACTGGCACAGATCCAGCAGGCAAAAAAGGAGAAG
GAGCCGGAGTACATGCTCCTTACAGAACGAGGTCTTCCACGTCGCAGGGAGTTTGTGATGCAGG
TGAAGGTTGGGCATCACACCGCAGAAGGAGCAGGTACCAATAAGAAGGTGGCCAAGCGCAATGC
TGCTGAGAACATGCTGGAGATCCTGGGGTTCAAAGTCCCCCAGGCGCAGCCTGCCAAGCCAGCA
CTCAAATCAGAAGAGAAGACTCCAGTAAAGAAACCAGGAGATGGAAGGAAAGTAACATTTTTTG
AACCTAGCCCTGGGGATGAAAATGGAACCAGTAATAAAGAGGATGAGTTCAGGATGCCCTATCT
TAGCCATCAGCAGCTGCCAGCCGGGATCCTCCCCATGGTGCCAGAGGTTGCCCAGGCTGTCGGG
GTTAGTCAAGGACACCATACCAAAGATTTCGCCAGGGCAGCTCCAAATCCTGCCAAGGCCACGG
TAACTGCCATGATAGCCCGAGAATTGTTGTACGGGGGCACCTCGCCCACAGCCGAGACCATTTT
AAAGAGTAACATCTCTTCAGGACATGTACCCCATGGACCTCGCACAAGACCCTCTGAGCAACTG
TACTACCTTTCCAGAGCCCAGGGATTCCAGGTTGAATACAAAGACTTCCCCAAGAACAACAAGA
ACGAGTGTGTATCTCTCATCAACTGCTCTTCACAGCCACCTCTCGTCAGCCATGGCATCGGCAA
GGATGTGGAGTCCTGTCATGATATGGCTGCACTGAACATCTTAAAGCTGCTGTCTGAGTTGGAC
CAACAGAGCACAGAGATGCCAAGGACAGGAAACGGACCAGTTTCAGCGTGCGGGAGGTGCTGAA
CCTATTCTGGCCATGAACCATTATAAAACCCAACATATATACCGAAAATACTGAGAACTGCTTT
GAAAATTTGGAATTTCTGATAACTCCAGTGGGCCAAGACATGGTGGATAAAAAAATGTGGCAAA
GAAGAAAAGGAACTGCAGGTGGTGGCCTTGGTTGGGCTGGGCTGCTGGTGACGCTGTGCTCCGC
CATCCACCAGGAGACCAGCAGCTCCAGTGTCTCCAGCTTTTATTTTTGCCTCGTGACAGAGAAA
CGGAGAGCGTGGCCAACTCTCACGCTGGCTTCTTCAGATTCTTTGGAAAACCGGGACAGCCACA
CCAGAGAGGCCTTACAGCGGCCCCGGAGCTAAACGCACCAGAGAAAAACCAGTGCTTCCTACAT
GACTGACGCAACTCTGCCACACGTAGCACCCACCGTAACCACTGCTTTCTCTTCAACAGTGATG
GATGCCTGTTAGTTCCATTATTCCCTTTGGTTGAGATGACACTATGTAATTTTCATTTCAGTTT
CTCAGTTGCATCTACTTACCTAGCAGTTTAGAAACTAGTCTGAGACAGATGCTATCCAGCTATG
TAACTGGCAAAGACCACAGCCCTGTTTGGTGATGCATTCTGTGCCTCTGGCTCGGCTGGCAGTT
CTGGACTTAACCACAAGAATCCTTGACTCCCAACCCCTTGTATAAATTGGACAGCTTAGGACTT
TTAAACTTTAGGAGATCAAAAGATTTGGTCCTTTTTAACTTTATTTTTAAGCAGCATACTTAAA
AGTGAGCCTGACCTTTACCAGTTATAACAGATTGTCAACGGGAGAGGTTGTCACCCATTGTAAC
AGATTGCCAGTGGGAGGTCACTTGAGGGAGTATTGCTCAAGGTGGCTTTTTCTACACACTACAG
GACATTACCTGTGGGCCCAGAAGACTATGGGCTGGTGTCCCTGGAGGGCCCAATACAGTCAATC
CCAGCCTCCACGTAGGGAAGGGCGACAGGTTTCCTGGTGCTGTGCTAGTGTGCACAGAGGCAGG
AAGGTCTGCCGGCCTGGTGTGGAGCATTGTGGCTCTGAGTGCAACCCTGCTGCTCCCACTCGGG
GTTTAGCTGGACCTTTTCACCCATGGAATATAAGGAAACTTAGTCTTTGTCACCAATAAATGAG
AATACTAAATTTTTTTTGTTAATTTATTTTCAAATGTCACTACTTCTAGATCAATCTCCTTCTG
GTTCATCCCCTTCCCCACCTTTTTTTAAAAGAAGAGAATATTTGTAATGCTTGTGATTCTGTCT
GGGCAAAAATCTGAAGATCTAAAATCTCTTTATATTAAACTATTGATCAATAAACAGCTACTAA
G

hide sequence

Protein Sequences


Protein RefSeqs	NP_001103377	(Get FASTA)	NCBI Sequence Viewer
	NP_445888	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF98119	(Get FASTA)	NCBI Sequence Viewer
	AAF98177	(Get FASTA)	NCBI Sequence Viewer
	AAH81755	(Get FASTA)	NCBI Sequence Viewer
	AAI01859	(Get FASTA)	NCBI Sequence Viewer
	CAA09037	(Get FASTA)	NCBI Sequence Viewer
	EDL96427	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010633
	ENSRNOP00000010633.4

RefSeq Acc Id:	NP_445888 ⟸ NM_053436
- Peptide Label:	isoform 1
- UniProtKB:	Q66HP4 (UniProtKB/TrEMBL), Q9ET50 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYKPVDPHSRMQSTYSYGMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKMRPPVKHDA TARALRTLQSEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFESFPLTQVARESGP PHMKNFVTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCK LQTAPDYGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGAGTNKK VAKRNAAENMLEILGFKVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEPSPGDENGTSNKEDE FRMPYLSHQQLPAGILPMVPEVAQAVGVSQGHHTKDFARAAPNPAKATVTAMIARELLYGGTSP TAETILKSNISSGHVPHGPRTRPSEQLYYLSRAQGFQVEYKDFPKNNKNECVSLINCSSQPPLV SHGIGKDVESCHDMAALNILKLLSELDQQSTEMPRTGNGPVSACGRC hide sequence

RefSeq Acc Id:	NP_001103377 ⟸ NM_001109907
- Peptide Label:	isoform 2
- UniProtKB:	Q66HP4 (UniProtKB/TrEMBL), Q9ESY8 (UniProtKB/TrEMBL), Q3T1L2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYKPVDPHSRMQSTYSYGMRGGAYPPRYFYPFPVPPLLYQVELSVGGQQFNGKGKMRPPVKHDA TARALRTLQSEPLPERLEVNGRESEEENLNKSEISQVFEIALKRNLPVNFEVARESGPPHMKNF VTRVSVGEFVGEGEGKSKKISKKNAARAVLEQLRRLPPLPAVERVKPRIKKKSQPTCKLQTAPD YGQGMNPISRLAQIQQAKKEKEPEYMLLTERGLPRRREFVMQVKVGHHTAEGAGTNKKVAKRNA AENMLEILGFKVPQAQPAKPALKSEEKTPVKKPGDGRKVTFFEPSPGDENGTSNKEDEFRMPYL SHQQLPAGILPMVPEVAQAVGVSQGHHTKDFARAAPNPAKATVTAMIARELLYGGTSPTAETIL KSNISSGHVPHGPRTRPSEQLYYLSRAQGFQVEYKDFPKNNKNECVSLINCSSQPPLVSHGIGK DVESCHDMAALNILKLLSELDQQSTEMPRTGNGPVSACGRC hide sequence

Ensembl Acc Id:

ENSRNOP00000010633 ⟸ ENSRNOT00000010633

Protein Domains

DRBM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ET50-F1-model_v2	AlphaFold	Q9ET50	1-495	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692687

Promoter ID:

EPDNEW_R3212

Type:

multiple initiation site

Name:

Stau1_1

Description:

staufen double-stranded RNA binding protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	163,749,022 - 163,749,082	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621778	AgrOrtholog
BioCyc Gene	G2FUF-46758	BioCyc
Ensembl Genes	ENSRNOG00000007781	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010633	ENTREZGENE
	ENSRNOT00000010633.7	UniProtKB/TrEMBL
Gene3D-CATH	3.30.160.20	UniProtKB/TrEMBL
	6.10.250.1360	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7124595	IMAGE-MGC_LOAD
	IMAGE:7937343	IMAGE-MGC_LOAD
InterPro	DRBM-containing_protein	UniProtKB/TrEMBL
	dsRNA-bd-like	UniProtKB/TrEMBL
	STAU1_DSRM_3	UniProtKB/TrEMBL
	Staufen_C	UniProtKB/TrEMBL
KEGG Report	rno:84496	UniProtKB/TrEMBL
MGC_CLONE	MGC:124588	IMAGE-MGC_LOAD
	MGC:93303	IMAGE-MGC_LOAD
NCBI Gene	84496	ENTREZGENE
PANTHER	DOUBLE-STRANDED RNA-BINDING PROTEIN STAUFEN HOMOLOG 1	UniProtKB/TrEMBL
	MATERNAL EFFECT PROTEIN STAUFEN	UniProtKB/TrEMBL
Pfam	dsrm	UniProtKB/TrEMBL
	Staufen_C	UniProtKB/TrEMBL
PhenoGen	Stau1	PhenoGen
PROSITE	DS_RBD	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007781	RatGTEx
SMART	DSRM	UniProtKB/TrEMBL
Superfamily-SCOP	dsRNA-binding domain-like	UniProtKB/TrEMBL
UniProt	Q3T1L2	ENTREZGENE, UniProtKB/TrEMBL
	Q66HP4	ENTREZGENE, UniProtKB/TrEMBL
	Q9ESY8	ENTREZGENE, UniProtKB/TrEMBL
	Q9ET50	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-06-14	Stau1	staufen double-stranded RNA binding protein 1	Stau1	staufen RNA binding protein homolog 1 (Drosophila)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Stau1	staufen RNA binding protein homolog 1 (Drosophila)	Stau	staufen (Drosophila, RNA-binding protein)	Symbol and Name updated	1299863	APPROVED
2002-08-07	Stau	staufen (Drosophila, RNA-binding protein)			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	has four double-stranded RNA-binding domains	634222
gene_process	regulates subcellular localization of dendritic microtubular cytoskeleton	634222

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD