Gchfr (GTP cyclohydrolase I feedback regulator) - Rat Genome Database

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Gene: Gchfr (GTP cyclohydrolase I feedback regulator) Rattus norvegicus
Analyze
Symbol: Gchfr
Name: GTP cyclohydrolase I feedback regulator
RGD ID: 621746
Description: Enables several functions, including GTP cyclohydrolase I regulator activity; GTP cyclohydrolase binding activity; and GTP-dependent protein binding activity. Involved in protein-containing complex assembly. Part of intracellular protein-containing complex. Orthologous to human GCHFR (GTP cyclohydrolase I feedback regulator); PARTICIPATES IN dopa responsive dystonia pathway; Segawa syndrome pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GFRP; GTP cyclohydrolase 1 feedback regulatory protein; GTP cyclohydrolase I feedback regulatory protein; MGC108604; p35
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,611,892 - 126,615,926 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3126,613,240 - 126,615,926 (+)EnsemblGRCr8
mRatBN7.23106,158,046 - 106,162,080 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,159,394 - 106,162,080 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3109,831,225 - 109,835,259 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,426,763 - 118,430,797 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,087,149 - 116,091,183 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,975,923 - 110,979,957 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,975,923 - 110,979,957 (+)Ensemblrn6Rnor6.0
Rnor_5.03117,526,561 - 117,530,595 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43105,683,288 - 105,687,349 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3105,071,083 - 105,075,117 (+)NCBICelera
RGSC_v3.13105,579,715 - 105,583,776 (+)NCBI
Cytogenetic Map3q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-methylcholanthrene  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
atrazine  (ISO)
avobenzone  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
carbonyl sulfide  (EXP)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dibenzofurans  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
glycidyl methacrylate  (ISO)
GW 4064  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
lead(0)  (ISO)
methyl methanesulfonate  (ISO)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
nitrates  (ISO)
nitrofen  (EXP)
nitroglycerin  (EXP)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
omeprazole  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA,ISO)
cytosol  (IEA)
dendrite  (IEA,ISO)
intracellular protein-containing complex  (IDA)
melanosome  (IEA,ISO)
nuclear membrane  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
protein-containing complex  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Crystal structure of rat GTP cyclohydrolase I feedback regulatory protein, GFRP. Bader G, etal., J Mol Biol. 2001 Oct 5;312(5):1051-7. doi: 10.1006/jmbi.2001.5011.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Structural basis of biopterin-induced inhibition of GTP cyclohydrolase I by GFRP, its feedback regulatory protein. Maita N, etal., J Biol Chem. 2004 Dec 3;279(49):51534-40. Epub 2004 Sep 23.
5. Crystal structure of the stimulatory complex of GTP cyclohydrolase I and its feedback regulatory protein GFRP. Maita N, etal., Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1212-7. Epub 2002 Jan 29.
6. Purification and cloning of the GTP cyclohydrolase I feedback regulatory protein, GFRP. Milstien S, etal., J Biol Chem 1996 Aug 16;271(33):19743-51.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Decameric GTP cyclohydrolase I forms complexes with two pentameric GTP cyclohydrolase I feedback regulatory proteins in the presence of phenylalanine or of a combination of tetrahydrobiopterin and GTP. Yoneyama T and Hatakeyama K, J Biol Chem. 1998 Aug 7;273(32):20102-8.
Additional References at PubMed
PMID:9092499   PMID:12477932   PMID:15292175   PMID:15489334   PMID:15649650   PMID:16778797   PMID:21163945  


Genomics

Comparative Map Data
Gchfr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,611,892 - 126,615,926 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3126,613,240 - 126,615,926 (+)EnsemblGRCr8
mRatBN7.23106,158,046 - 106,162,080 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,159,394 - 106,162,080 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3109,831,225 - 109,835,259 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,426,763 - 118,430,797 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,087,149 - 116,091,183 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,975,923 - 110,979,957 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,975,923 - 110,979,957 (+)Ensemblrn6Rnor6.0
Rnor_5.03117,526,561 - 117,530,595 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43105,683,288 - 105,687,349 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3105,071,083 - 105,075,117 (+)NCBICelera
RGSC_v3.13105,579,715 - 105,583,776 (+)NCBI
Cytogenetic Map3q35NCBI
GCHFR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,764,068 - 40,767,708 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,764,068 - 40,767,708 (+)Ensemblhg38GRCh38
GRCh371541,056,266 - 41,059,906 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,843,577 - 38,847,203 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341538,843,576 - 38,847,203NCBI
Celera1517,824,178 - 17,827,804 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,904,430 - 17,908,056 (+)NCBIHuRef
CHM1_11541,176,310 - 41,179,936 (+)NCBICHM1_1
T2T-CHM13v2.01538,570,090 - 38,573,730 (+)NCBIT2T-CHM13v2.0
Gchfr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,998,269 - 119,002,870 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,998,254 - 119,002,871 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382119,167,788 - 119,172,389 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,167,773 - 119,172,390 (+)Ensemblmm10GRCm38
MGSCv372118,993,524 - 118,998,125 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362118,859,229 - 118,863,830 (+)NCBIMGSCv36mm8
Celera2120,318,697 - 120,323,019 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Gchfr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,617,333 - 7,620,455 (+)Ensembl
ChiLan1.0NW_0049554167,617,333 - 7,620,455 (+)NCBIChiLan1.0ChiLan1.0
GCHFR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,003,976 - 30,008,732 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,156,359 - 34,160,172 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,704,891 - 19,708,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,957,114 - 37,960,973 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,957,109 - 37,960,973 (+)EnsemblpanPan2panpan1.1
GCHFR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,900,691 - 7,904,330 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,897,975 - 7,904,328 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha307,954,673 - 7,958,306 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0308,027,641 - 8,031,280 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,027,656 - 8,031,256 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,951,108 - 7,954,761 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,058,375 - 8,062,002 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,187,169 - 8,190,847 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gchfr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,318,829 - 86,323,613 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,166,506 - 4,171,713 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,166,923 - 4,171,676 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCHFR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,554,978 - 130,559,597 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11130,559,223 - 130,563,598 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,717,595 - 145,721,973 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GCHFR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,238,875 - 42,243,230 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,239,390 - 42,243,117 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604898,738,152 - 98,742,564 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gchfr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,012,346 - 8,016,755 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248048,013,735 - 8,016,744 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Gchfr
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1597,346,176 - 97,350,733 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gchfr
29 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:49
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000016458
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)3125814931139636791Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat

Markers in Region
RH130531  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,161,880 - 106,162,069 (+)MAPPERmRatBN7.2
Rnor_6.03110,979,758 - 110,979,946NCBIRnor6.0
Rnor_5.03117,530,396 - 117,530,584UniSTSRnor5.0
RGSC_v3.43105,687,149 - 105,687,337UniSTSRGSC3.4
Celera3105,074,918 - 105,075,106UniSTS
RH 3.4 Map3913.1UniSTS
Cytogenetic Map3q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 159 91 90 59 89 59 6 350 186 8 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016458   ⟹   ENSRNOP00000016458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3126,613,240 - 126,615,926 (+)Ensembl
mRatBN7.2 Ensembl3106,159,394 - 106,162,080 (+)Ensembl
Rnor_6.0 Ensembl3110,975,923 - 110,979,957 (+)Ensembl
RefSeq Acc Id: NM_133595   ⟹   NP_598279
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83126,611,892 - 126,615,926 (+)NCBI
mRatBN7.23106,158,046 - 106,162,080 (+)NCBI
Rnor_6.03110,975,923 - 110,979,957 (+)NCBI
Rnor_5.03117,526,561 - 117,530,595 (+)NCBI
RGSC_v3.43105,683,288 - 105,687,349 (+)RGD
Celera3105,071,083 - 105,075,117 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_598279 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52776 (Get FASTA)   NCBI Sequence Viewer  
  AAD09241 (Get FASTA)   NCBI Sequence Viewer  
  AAH86944 (Get FASTA)   NCBI Sequence Viewer  
  EDL79893 (Get FASTA)   NCBI Sequence Viewer  
  P70552 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_598279   ⟸   NM_133595
- UniProtKB: P70552 (UniProtKB/Swiss-Prot),   A6HPE2 (UniProtKB/TrEMBL),   A0A8L2Q831 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016458   ⟸   ENSRNOT00000016458

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70552-F1-model_v2 AlphaFold P70552 1-84 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692322
Promoter ID:EPDNEW_R2844
Type:initiation region
Name:Gchfr_1
Description:GTP cyclohydrolase I feedback regulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03110,975,912 - 110,975,972EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621746 AgrOrtholog
BioCyc Gene G2FUF-48216 BioCyc
Ensembl Genes ENSRNOG00000012290 Ensembl
Gene3D-CATH 3.30.1410.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7325198 IMAGE-MGC_LOAD
InterPro GFRP_sf UniProtKB/Swiss-Prot
  GTP_CycHdrlase_I_reg UniProtKB/Swiss-Prot
KEGG Report rno:171128 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108604 IMAGE-MGC_LOAD
NCBI Gene 171128 ENTREZGENE
PANTHER GTP CYCLOHYDROLASE 1 FEEDBACK REGULATORY PROTEIN UniProtKB/Swiss-Prot
  PTHR16852 UniProtKB/Swiss-Prot
Pfam GFRP UniProtKB/Swiss-Prot
PharmGKB GCHFR RGD
PhenoGen Gchfr PhenoGen
RatGTEx ENSRNOG00000012290 RatGTEx
Superfamily-SCOP SSF69761 UniProtKB/Swiss-Prot
UniProt A0A8L2Q831 ENTREZGENE, UniProtKB/TrEMBL
  A6HPE2 ENTREZGENE, UniProtKB/TrEMBL
  GFRP_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Gchfr  GTP cyclohydrolase I feedback regulator    GTP cyclohydrolase I feedback regulatory protein  Name updated 1299863 APPROVED
2002-08-07 Gchfr  GTP cyclohydrolase I feedback regulatory protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA expression high in liver and kidney, lower in brain, heart, testis and lung 728623
gene_physical_interaction forms a complex with GTP cyclohydralase I (Gch) 728623
gene_protein protein mass is 20 kDa, consists of 84 aa homodimer subunits of 9.5 kDa each 728623