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Gene: Hip1r (huntingtin interacting protein 1 related) Rattus norvegicus

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Symbol:

Hip1r

Name:

huntingtin interacting protein 1 related

RGD ID:

621615

Description:

Predicted to enable several functions, including SH3 domain binding activity; phosphatidylinositol phosphate binding activity; and protein dimerization activity. Involved in postsynapse organization. Is active in glutamatergic synapse and postsynaptic endocytic zone. Orthologous to human HIP1R (huntingtin interacting protein 1 related); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HIP1R (huntingtin interacting protein 1 related)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Hip1r (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hip1r (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HIP1R (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HIP1R (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hip1r (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HIP1R (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HIP1R (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hip1r (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Hip1r (huntingtin interacting protein 1 related)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	USP42 (ubiquitin specific peptidase 42)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	HIP1R (huntingtin interacting protein 1 related)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hip1r (huntingtin interacting protein 1 related)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hip1rb (huntingtin interacting protein 1 related b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Hip1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Hip1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SLA2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hipr-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hipr-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tag-138	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	rab9b	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hip1r	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hip1r	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	38,251,085 - 38,279,756 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	38,251,086 - 38,279,654 (-)	Ensembl				GRCr8
mRatBN7.2	12	32,590,164 - 32,618,841 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,590,165 - 32,618,734 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	33,768,901 - 33,797,424 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	34,380,245 - 34,408,769 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	33,432,136 - 33,460,662 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	38,024,517 - 38,053,184 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	38,024,519 - 38,053,085 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	39,895,504 - 39,924,082 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	33,714,225 - 33,742,792 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	34,277,732 - 34,306,331 (-)	NCBI		Celera
RGSC_v3.1	12	33,577,648 - 33,606,180 (-)	NCBI
Cytogenetic Map	12	q15	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

2,6-dimethoxyphenol (ISO)

2,6-dinitrotoluene (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (EXP)

alpha-pinene (ISO)

ammonium chloride (EXP)

arsenous acid (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

cadmium sulfate (ISO)

capsaicin (EXP)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

clobetasol (ISO)

cobalt dichloride (ISO)

copper(II) chloride (ISO)

cyclosporin A (EXP)

decabromodiphenyl ether (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

fipronil (EXP)

flavonoids (EXP)

folic acid (ISO)

furfural (ISO)

gentamycin (EXP)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

progesterone (ISO)

rotenone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

troglitazone (ISO)

trovafloxacin (ISO)

tungsten (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IBA)

clathrin coat assembly (IBA,IEA,ISO)

digestive system development (IEA,ISO)

endocytosis (IBA,IEA)

intrinsic apoptotic signaling pathway (IEA,ISO)

membrane organization (IEA,ISO)

negative regulation of actin filament polymerization (IEA,ISO)

negative regulation of apoptotic process (IEA,ISO)

negative regulation of Arp2/3 complex-mediated actin nucleation (IEA,ISO)

positive regulation of clathrin coat assembly (IEA,ISO)

positive regulation of epidermal growth factor receptor signaling pathway (IBA,IEA,ISO)

positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway (IEA,ISO)

positive regulation of platelet-derived growth factor receptor-beta signaling pathway (IBA,IEA,ISO)

postsynapse organization (IDA,IMP)

protein stabilization (IEA,ISO)

receptor-mediated endocytosis (IEA,ISO)

regulation of actin cytoskeleton organization (IEA,ISO)

regulation of apoptotic process (IBA)

regulation of endocytosis (IEA,ISO)

regulation of gastric acid secretion (IEA,ISO)

Cellular Component

apical plasma membrane (IEA,ISO)

cell cortex (IEA,ISO)

clathrin-coated pit (IEA,ISO)

clathrin-coated vesicle (IBA,IEA,ISO)

cortical actin cytoskeleton (IBA)

cytoplasm (IEA)

cytoskeleton (IEA,ISO)

cytosol (IEA,ISO)

glutamatergic synapse (IDA,IEP,IMP)

mitochondrion (IEA)

perinuclear region of cytoplasm (IEA,ISO)

postsynapse (IDA,IEP)

postsynaptic endocytic zone (IDA,IMP)

ruffle membrane (IEA,ISO)

Molecular Function

actin binding (IEA,ISO)

actin filament binding (IBA,IEA,ISO)

clathrin adaptor activity (IBA,IEA,ISO)

clathrin binding (IEA,ISO)

clathrin light chain binding (IBA,IEA,ISO)

identical protein binding (IEA,ISO)

phosphatidylinositol binding (IEA,ISO)

phosphatidylinositol-3,4,5-trisphosphate binding (IEA,ISO)

phosphatidylinositol-3,4-bisphosphate binding (IBA,IEA,ISO)

phosphatidylinositol-3,5-bisphosphate binding (IBA,IEA,ISO)

phosphatidylinositol-4,5-bisphosphate binding (IEA,ISO)

phospholipid binding (IEA)

protein binding (ISO)

protein heterodimerization activity (IEA,ISO)

protein homodimerization activity (IEA,ISO)

SH3 domain binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Dynamics and nanoscale organization of the postsynaptic endocytic zone at excitatory synapses.	Catsburg LA, etal., Elife. 2022 Jan 24;11:e74387. doi: 10.7554/eLife.74387.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Huntingtin-interacting protein-1-related protein of rat (rHIP1R) is localized in the postsynaptic regions.	Okano A, etal., Brain Res 2003 Mar 28;967(1-2):210-25.
6.	Huntingtin-Interacting Protein 1-Related Protein Plays a Critical Role in Dendritic Development and Excitatory Synapse Formation in Hippocampal Neurons.	Peng L, etal., Front Mol Neurosci. 2017 Jun 15;10:186. doi: 10.3389/fnmol.2017.00186. eCollection 2017.
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10613908	PMID:11564758	PMID:11889126	PMID:12477932	PMID:14732715	PMID:14742709	PMID:15533940	PMID:16415883	PMID:17318189	PMID:18535670	PMID:18790740	PMID:19255499

Genomics

Comparative Map Data

Hip1r
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	38,251,085 - 38,279,756 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	38,251,086 - 38,279,654 (-)	Ensembl				GRCr8
mRatBN7.2	12	32,590,164 - 32,618,841 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	32,590,165 - 32,618,734 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	33,768,901 - 33,797,424 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	34,380,245 - 34,408,769 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	33,432,136 - 33,460,662 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	38,024,517 - 38,053,184 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	38,024,519 - 38,053,085 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	39,895,504 - 39,924,082 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	33,714,225 - 33,742,792 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	34,277,732 - 34,306,331 (-)	NCBI		Celera
RGSC_v3.1	12	33,577,648 - 33,606,180 (-)	NCBI
Cytogenetic Map	12	q15	NCBI

HIP1R
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	122,834,748 - 122,862,961 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	122,834,453 - 122,862,961 (+)	Ensembl			hg38	GRCh38
GRCh37	12	123,319,295 - 123,347,508 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	121,885,992 - 121,913,460 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	120,292,995 - 120,307,523 (+)	NCBI		HuRef
CHM1_1	12	123,288,408 - 123,315,480 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	122,830,187 - 122,858,212 (+)	NCBI		T2T-CHM13v2.0

Hip1r
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	124,111,665 - 124,141,263 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	124,111,691 - 124,143,621 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	123,973,602 - 124,003,215 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	123,973,628 - 124,005,558 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	124,423,637 - 124,453,224 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	124,234,257 - 124,263,818 (+)	NCBI		MGSCv36	mm8
Celera	5	121,036,606 - 121,075,804 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	63.3	NCBI

Hip1r
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	5,884,839 - 5,896,389 (-)	Ensembl
ChiLan1.0	NW_004955482	5,885,807 - 5,896,386 (-)	NCBI	ChiLan1.0	ChiLan1.0

HIP1R
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	130,927,935 - 130,956,881 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	130,924,306 - 130,953,266 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	120,438,841 - 120,467,489 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	124,672,109 - 124,700,726 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	124,685,091 - 124,700,726 (+)	Ensembl			panPan2	panpan1.1

HIP1R
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	6,623,583 - 6,639,107 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	6,624,791 - 6,637,659 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	6,785,375 - 6,813,922 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	6,872,729 - 6,901,296 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	6,873,942 - 6,901,454 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	6,805,561 - 6,834,112 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	6,898,281 - 6,926,838 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	6,851,903 - 6,880,452 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Hip1r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	157,682,803 - 157,700,559 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	1,778,888 - 1,791,610 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	1,778,862 - 1,804,071 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HIP1R
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	29,993,655 - 30,024,216 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	29,996,388 - 30,024,343 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	31,685,234 - 31,713,135 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HIP1R
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	118,173,302 - 118,202,840 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	118,173,544 - 118,202,985 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	127,111,575 - 127,140,009 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hip1r
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	22,876,276 - 22,896,584 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624747	22,876,183 - 22,897,557 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Hip1r
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	29,857,819 - 29,886,180 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Hip1r
336 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	175
Count of miRNA genes:	123
Interacting mature miRNAs:	144
Transcripts:	ENSRNOT00000034264
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1300162	Bp188	Blood pressure QTL 188	3.19		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	37764145	51558799	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1600386	Calcic2	Intracellular calcium level QTL 2		0.001	platelet physiology trait (VT:0005464)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
1300175	Cm5	Cardiac mass QTL 5	3.78		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	33700432	51558799	Rat
1556747	Calcic1	Intracellular calcium level QTL 1		3.6	platelet calcium amount (VT:0010500)	platelet intracellular calcium level (CMO:0000922)	12	33700432	46784661	Rat
631829	Alc6	Alcohol consumption QTL 6	4.7		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	12	34243475	43352593	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	92	59	6	356	192	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001134763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_031234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB005052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC169096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034264 ⟹ ENSRNOP00000029635

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	38,251,086 - 38,279,654 (-)	Ensembl
mRatBN7.2 Ensembl	12	32,590,165 - 32,618,734 (-)	Ensembl
Rnor_6.0 Ensembl	12	38,024,519 - 38,053,085 (-)	Ensembl

RefSeq Acc Id:

NM_001134763 ⟹ NP_001128235

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,279,654 (-)	NCBI
mRatBN7.2	12	32,590,164 - 32,618,734 (-)	NCBI
Rnor_6.0	12	38,024,518 - 38,053,085 (-)	NCBI
Rnor_5.0	12	39,895,504 - 39,924,082 (-)	NCBI
RGSC_v3.4	12	33,714,225 - 33,742,792 (-)	RGD
Celera	12	34,277,732 - 34,306,331 (-)	RGD

Sequence:

show sequence

CGCGCGGAGCCGGGCCGGGACAGGGTCGGCGGCAGCATGAACAGCATCAAGAATGTGCCGGCGC
GGGTGCTGAGCCGCAGGCCGGGCCATAGCCTAGAGGCCGAGCGCGAGCAGTTCGACAAGACGCA
GGCCATCAGTATCAGCAAAGCCATCAACAGCCAGGAGGCCCCAGTGAAGGAGAAGCATGCCCGG
CGTATCATTCTGGGCACTCACCATGAGAAAGGAGCCTTTACCTTCTGGTCCTATGCCATCGGCC
TGCCGCTGCCCAGCAGCTCCATCCTCAGTTGGAAATTCTGTCACGTCCTTCACAAAGTCCTCCG
AGATGGACACCCCAATGTGCTGCATGACTGCCAGCGGTACCGGAGCAACATACGTGAGATTGGC
GACTTGTGGGGCCACCTACGTGACCAGTATGGACACCTGGTGAATATCTATACCAAACTGCTGC
TGACTAAAATCTCCTTCCACCTTAAGCACCCCCAGTTTCCTGCGGGCTTGGAGGTAACAGATGA
AGTGTTGGAGAAGGCGGCGGGAACTGATGTTAATAACATTTTTCAGCTCACTGTGGAGATGTTT
GACTACATGGACTGTGAACTGAAGCTTTCTGAGTCAGTTTTCCGGCAGCTCAACACAGCCATCG
CAGTGTCACAGATGTCTTCTGGCCAGTGTCGCCTGGCGCCGCTCATCCAGGTCATCCAGGACTG
CAGCCACCTGTACCACTACACGGTGAAGCTCATGTTCAAGCTCCACTCCTGTCTCCCAGCAGAC
ACCCTGCAAGGCCACAGGGATCGGTTCCACGAGCAGTTTCACAGTCTCAGAAACTTCTTCCGCC
GAGCCTCGGACATGCTCTACTTCAAGCGACTCATCCAGATCCCCAGACTGCCTGAGGGACCCCC
CAATTTCCTGCGGGCCTCAGCCCTGGCTGAGCACATCAAGCCGGTGGTGGTGATTCCAGAAGAG
GCCCCGGAGGAGGAGGAGCCTGAGAACCTAATTGAGATCAGCAGTGGGCCCCCTGCTGGGGAGC
CAGTGCAGGTGGTGGCTGACCTCTTTGATCAGACCTTTGGACCCCCCAATGGCTCCATGAAGGA
TGACAGGGACCTCCAGATTGAGAACTTGAAGAGAGAGGTGGAGACCCTCCGTGCTGAGCTGGAG
AAGATTAAGATGGAGGCCCAGCGGTACATCTCGCAGCTGAAGGGCCAGGTGAACAGCCTGGAGG
CAGAGCTGGAGGAGCAGCGGAAGCAGAAGCAGAAGGCCCTGGTGGACAACGAGCAGCTGCGCCA
CGAGCTGGCCCAGCTGAAAGCCCTGCAGCTGGAAGGCGCGCGCAACCAGGGCCTGCGAGAGGAG
GCGGAGAGGAAGGCCAGTGCCACTGAGGCACGCTACAGCAAGCTGAAGGAGAAGCACAATGAAC
TCATTAACACGCATGCCGAGCTGCTCAGGAAGAATGCAGACACAGCCAAGCAGCTGACGGTGAC
ACAGCAGAGCCAGGAGGAGGTGGCACGGGTAAAGGAGCAGCTGGCCTTCCAGATGGAGCAAGTG
AAGCGGGAGTCTGAGATGAAGATGGAGGAGCAGAGTGACCAGCTGGAGAAGCTCAAGAGGGAGC
TGGTGGCCAAGGCAGGAGAGCTGGCCCATGCCCAGGAGGCCCTGAGCCGCACGGAACAGAGTGG
GTCAGAGCTGAGCTCACGGCTAGATACACTGAACGCAGAGAAGGAAGCACTGAGCGGAGCCATT
CGGCAGCGTGAGGCAGAGCTGCTGGCTGCCCAGAGCCTGGTGCGGGAGAAGGAAGAGGCTCTTA
GCCAAGAGCAGCAGCGCAGCGCCCAGGAGAAGGGCGAGCTACAGGGGCGGCTGGCAGAAAAGGA
GTCTCAGGAGCAGGGGCTCCAGCAGAAGCTGCTGGATGAACAGTTTGCAGTGCTGCGAGGTGCA
GCCGCCGAGGCGGAGGCCATCCTGCAGGACGCAGTGAGCAAGCTGGATGACCCCCTGCACCTCC
GTTGCACCAGCTCCCCAGACTACTTAGTGAGCCGGGCTCAGGCAGCCCTGGACAGCGTGAGTGG
CCTGGAGAAGGGCCACACCCAGTACCTGGCTTCCTCTGAGGATGCTTCCGCCCTGGTAGCAGCA
CTGACCCGCTTCTCCCATCTGGCCGCGGACACCATTGTCAACGGTGGCGCCACCTCGCACCTGG
CCCCCACTGACCCCGCTGACCGCCTGATCGACACGTGCAGGGAGTGTGGAGCCCGGGCTCTGGA
GCTCATGGGACAGCTGCAGGACCAGACAAAGCTACCGAGGGCCCAGCCCAGCCTGATGCGGGCC
CCTCTGCAGGGCATTCTTCAGTTGGGCCAGGACCTGAAGCCTAAGAGCCTGGACGTCCGGCAAG
AGGAGCTAGGGGCCATGGTTGACAAGGAGATGGCAGCCACCTCTGCAGCCATTGAGGACGCTGT
GCGGAGGATCGAGGACATGATGAACCAGGCCCGCCACGAGAGCTCAGGGGTGAAACTAGAGGTG
AACGAGAGGATCCTCAACTCCTGCACAGATCTGATGAAGGCCATCCGGCTCCTGGTGATGACGT
CCACCAGCCTGCAGAAGGAGATTGTGGAGAGCGGCAGGGGGGCAGCAACACAGCAGGAATTTTA
TGCCAAGAATTCACGGTGGACTGAAGGCCTCATCTCTGCCTCGAAGGCAGTGGGCTGGGGAGCC
ACACAGCTGGTGGAGTCAGCTGACAAGGTTGTGCTTCACATGGGCAAATATGAGGAACTCATCG
TCTGCTCACACGAGATTGCAGCCAGCACTGCCCAGCTGGTGGCAGCCTCGAAGGTAAAAGCCAA
CAAGAACAGTCCCCACCTGAGCCGCCTGCAGGAGTGTTCCCGCACTGTCAACGAGAGGGCTGCC
AATGTGGTGGCCTCCACCAAGTCTGGCCAGGAGCAGATCGAGGACAGAGACACCATGGATTTCT
CTGGCCTGTCTCTCATCAAGCTGAAGAAGCAGGAGATGGAGACACAGGTGCGAGTCTTGGAGCT
GGAGAAGACGCTAGAGGCAGAGCGCGTACGGCTCGGGGAGCTTCGGAAGCAGCACTATGTACTG
GCGGGGGGCATGGGGACACCTGGCGAAGAAGAACCCAGCAGACCCAGCCCAGCTCCCCGAAGTG
GGGCCACTAAGAAGCCACCTCTTGCCCAGAAACCCAGCATAGCCCCCAGGCCGGACAACCAGCT
CGACAAGAAGGATGGTGTCTACCCAGCTCAACTTGTGAACTACTAGGCCCCCTAAGGTGTTCAG
CAGTTTGGCTGGGGGCTATGCCTGGGCTTCATGTGGCTGTCTGGCAGCGGTCAAGGGGCCTCTG
AAAGGCCTCCAACTCCTGCACCTGGAGCCCAAAGCAGTGTCCCTAAGGCCCCAGCCTTCACCTG
CCCAAGGGGCCTGGTCTCTGTGGGACAGTTCACGTGGATGTGACTCTATTTATCTCTAGTAGGA
ACTGCCCAGAGCAGCTGGGACCCAGCAGGCCTGAGCCACAAATCTGCAGCGGACATCTGAGATG
GCTTGAACGCTGCGAGTTCTTTCTTTCCTTGTAAGTTTAGTCAGCACACTGGGAAAAGGCCACA
AGCCAGGGCCTCCTTGCCTCTGGACTCAAAAGTCTGAGACCACAAGTGAACAACAGAAAGAGGG
TCCCTGCTGGCTATCGGGGATAAGGGGATGACCTGTGACCCCTGAGCCAGGGAGAGCAGGTAGG
CTGGCTGGGGTCATCATCTGGGGGCCTGGTGCTAGGGCACCCATGCTGGGAGCCCCAGGAGAGC
AGGCTTTGTGTGGGTGCCATGGCTGTGGGCAACCCCTGCTCAGGTGCTGTCTCTAGCCTTGAAG
ACCTGGAAGCCGCCCTCACCCTTGCTGTTTCCATCCTTCTGGCTACTAGTGTGGCAGTCCACTG
CCCACCTCGATGGCCGATTCAGCCCTCCTAAAGCTGGGGCCTTCCAGCCAGTTAGAAGCTAGGA
AAAAAGCAGATGTCACAGCCCATGTTTCTGGAGGCTCAGGAATTCCTGCTGCAGAGGCCCAGGC
TCGGAGGCCCAGGCTCGGAGGCCTGGCCTGGCCTGGCCTGCCCTGCTCCTGACACTTTGAATAA
ATTTGTGTTTCTAGAGCCCGAGGGGGAGTTGTTGGGGGTGGGGATATCTAGGCCACCAATAAAG
CCAGCAGCTGGTCTGGGACAAGTGCCCAGCTTCCTCCAGCTGCCTGCCCTGAGCCCTGGGTGGC
TACCAACCATGGGGCAAGGTCCGGGCGTCGGGAGGGAGCCAACTCCTTTGCCCTGGGCCTAGTA
TTCCTGTTGAGTCCTGTTGGCAATAAACCCTGACTGTTGTTACCAGTGCCCTAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

NM_031234 ⟹ NP_112513

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,279,654 (-)	NCBI
mRatBN7.2	12	32,590,164 - 32,618,734 (-)	NCBI
Rnor_6.0	12	38,024,518 - 38,053,085 (-)	NCBI
Rnor_5.0	12	39,895,504 - 39,924,082 (-)	NCBI
RGSC_v3.4	12	33,714,225 - 33,742,792 (-)	RGD
Celera	12	34,277,732 - 34,306,331 (-)	RGD

Sequence:

show sequence

CGCGCGGAGCCGGGCCGGGACAGGGTCGGCGGCAGCATGAACAGCATCAAGAATGTGCCGGCGC
GGGTGCTGAGCCGCAGGCCGGGCCATAGCCTAGAGGCCGAGCGCGAGCAGTTCGACAAGACGCA
GGCCATCAGTATCAGCAAAGCCATCAACAGCCAGGAGGCCCCAGTGAAGGAGAAGCATGCCCGG
CGTATCATTCTGGGCACTCACCATGAGAAAGGAGCCTTTACCTTCTGGTCCTATGCCATCGGCC
TGCCGCTGCCCAGCAGCTCCATCCTCAGTTGGAAATTCTGTCACGTCCTTCACAAAGTCCTCCG
AGATGGACACCCCAATGTGCTGCATGACTGCCAGCGGTACCGGAGCAACATACGTGAGATTGGC
GACTTGTGGGGCCACCTACGTGACCAGTATGGACACCTGGTGAATATCTATACCAAACTGCTGC
TGACTAAAATCTCCTTCCACCTTAAGCACCCCCAGTTTCCTGCGGGCTTGGAGGTAACAGATGA
AGTGTTGGAGAAGGCGGCGGGAACTGATGTTAATAACATTTTTCAGCTCACTGTGGAGATGTTT
GACTACATGGACTGTGAACTGAAGCTTTCTGAGTCAGTTTTCCGGCAGCTCAACACAGCCATCG
CAGTGTCACAGATGTCTTCTGGCCAGTGTCGCCTGGCGCCGCTCATCCAGGTCATCCAGGACTG
CAGCCACCTGTACCACTACACGGTGAAGCTCATGTTCAAGCTCCACTCCTGTCTCCCAGCAGAC
ACCCTGCAAGGCCACAGGGATCGGTTCCACGAGCAGTTTCACAGTCTCAGAAACTTCTTCCGCC
GAGCCTCGGACATGCTCTACTTCAAGCGACTCATCCAGATCCCCAGACTGCCTGAGGGACCCCC
CAATTTCCTGCGGGCCTCAGCCCTGGCTGAGCACATCAAGCCGGTGGTGGTGATTCCAGAAGAG
GCCCCGGAGGAGGAGGAGCCTGAGAACCTAATTGAGATCAGCAGTGGGCCCCCTGCTGGGGAGC
CAGTGGTGGTGGCTGACCTCTTTGATCAGACCTTTGGACCCCCCAATGGCTCCATGAAGGATGA
CAGGGACCTCCAGATTGAGAACTTGAAGAGAGAGGTGGAGACCCTCCGTGCTGAGCTGGAGAAG
ATTAAGATGGAGGCCCAGCGGTACATCTCGCAGCTGAAGGGCCAGGTGAACAGCCTGGAGGCAG
AGCTGGAGGAGCAGCGGAAGCAGAAGCAGAAGGCCCTGGTGGACAACGAGCAGCTGCGCCACGA
GCTGGCCCAGCTGAAAGCCCTGCAGCTGGAAGGCGCGCGCAACCAGGGCCTGCGAGAGGAGGCG
GAGAGGAAGGCCAGTGCCACTGAGGCACGCTACAGCAAGCTGAAGGAGAAGCACAATGAACTCA
TTAACACGCATGCCGAGCTGCTCAGGAAGAATGCAGACACAGCCAAGCAGCTGACGGTGACACA
GCAGAGCCAGGAGGAGGTGGCACGGGTAAAGGAGCAGCTGGCCTTCCAGATGGAGCAAGTGAAG
CGGGAGTCTGAGATGAAGATGGAGGAGCAGAGTGACCAGCTGGAGAAGCTCAAGAGGGAGCTGG
TGGCCAAGGCAGGAGAGCTGGCCCATGCCCAGGAGGCCCTGAGCCGCACGGAACAGAGTGGGTC
AGAGCTGAGCTCACGGCTAGATACACTGAACGCAGAGAAGGAAGCACTGAGCGGAGCCATTCGG
CAGCGTGAGGCAGAGCTGCTGGCTGCCCAGAGCCTGGTGCGGGAGAAGGAAGAGGCTCTTAGCC
AAGAGCAGCAGCGCAGCGCCCAGGAGAAGGGCGAGCTACAGGGGCGGCTGGCAGAAAAGGAGTC
TCAGGAGCAGGGGCTCCAGCAGAAGCTGCTGGATGAACAGTTTGCAGTGCTGCGAGGTGCAGCC
GCCGAGGCGGAGGCCATCCTGCAGGACGCAGTGAGCAAGCTGGATGACCCCCTGCACCTCCGTT
GCACCAGCTCCCCAGACTACTTAGTGAGCCGGGCTCAGGCAGCCCTGGACAGCGTGAGTGGCCT
GGAGAAGGGCCACACCCAGTACCTGGCTTCCTCTGAGGATGCTTCCGCCCTGGTAGCAGCACTG
ACCCGCTTCTCCCATCTGGCCGCGGACACCATTGTCAACGGTGGCGCCACCTCGCACCTGGCCC
CCACTGACCCCGCTGACCGCCTGATCGACACGTGCAGGGAGTGTGGAGCCCGGGCTCTGGAGCT
CATGGGACAGCTGCAGGACCAGACAAAGCTACCGAGGGCCCAGCCCAGCCTGATGCGGGCCCCT
CTGCAGGGCATTCTTCAGTTGGGCCAGGACCTGAAGCCTAAGAGCCTGGACGTCCGGCAAGAGG
AGCTAGGGGCCATGGTTGACAAGGAGATGGCAGCCACCTCTGCAGCCATTGAGGACGCTGTGCG
GAGGATCGAGGACATGATGAACCAGGCCCGCCACGAGAGCTCAGGGGTGAAACTAGAGGTGAAC
GAGAGGATCCTCAACTCCTGCACAGATCTGATGAAGGCCATCCGGCTCCTGGTGATGACGTCCA
CCAGCCTGCAGAAGGAGATTGTGGAGAGCGGCAGGGGGGCAGCAACACAGCAGGAATTTTATGC
CAAGAATTCACGGTGGACTGAAGGCCTCATCTCTGCCTCGAAGGCAGTGGGCTGGGGAGCCACA
CAGCTGGTGGAGTCAGCTGACAAGGTTGTGCTTCACATGGGCAAATATGAGGAACTCATCGTCT
GCTCACACGAGATTGCAGCCAGCACTGCCCAGCTGGTGGCAGCCTCGAAGGTAAAAGCCAACAA
GAACAGTCCCCACCTGAGCCGCCTGCAGGAGTGTTCCCGCACTGTCAACGAGAGGGCTGCCAAT
GTGGTGGCCTCCACCAAGTCTGGCCAGGAGCAGATCGAGGACAGAGACACCATGGATTTCTCTG
GCCTGTCTCTCATCAAGCTGAAGAAGCAGGAGATGGAGACACAGGTGCGAGTCTTGGAGCTGGA
GAAGACGCTAGAGGCAGAGCGCGTACGGCTCGGGGAGCTTCGGAAGCAGCACTATGTACTGGCG
GGGGGCATGGGGACACCTGGCGAAGAAGAACCCAGCAGACCCAGCCCAGCTCCCCGAAGTGGGG
CCACTAAGAAGCCACCTCTTGCCCAGAAACCCAGCATAGCCCCCAGGCCGGACAACCAGCTCGA
CAAGAAGGATGGTGTCTACCCAGCTCAACTTGTGAACTACTAGGCCCCCTAAGGTGTTCAGCAG
TTTGGCTGGGGGCTATGCCTGGGCTTCATGTGGCTGTCTGGCAGCGGTCAAGGGGCCTCTGAAA
GGCCTCCAACTCCTGCACCTGGAGCCCAAAGCAGTGTCCCTAAGGCCCCAGCCTTCACCTGCCC
AAGGGGCCTGGTCTCTGTGGGACAGTTCACGTGGATGTGACTCTATTTATCTCTAGTAGGAACT
GCCCAGAGCAGCTGGGACCCAGCAGGCCTGAGCCACAAATCTGCAGCGGACATCTGAGATGGCT
TGAACGCTGCGAGTTCTTTCTTTCCTTGTAAGTTTAGTCAGCACACTGGGAAAAGGCCACAAGC
CAGGGCCTCCTTGCCTCTGGACTCAAAAGTCTGAGACCACAAGTGAACAACAGAAAGAGGGTCC
CTGCTGGCTATCGGGGATAAGGGGATGACCTGTGACCCCTGAGCCAGGGAGAGCAGGTAGGCTG
GCTGGGGTCATCATCTGGGGGCCTGGTGCTAGGGCACCCATGCTGGGAGCCCCAGGAGAGCAGG
CTTTGTGTGGGTGCCATGGCTGTGGGCAACCCCTGCTCAGGTGCTGTCTCTAGCCTTGAAGACC
TGGAAGCCGCCCTCACCCTTGCTGTTTCCATCCTTCTGGCTACTAGTGTGGCAGTCCACTGCCC
ACCTCGATGGCCGATTCAGCCCTCCTAAAGCTGGGGCCTTCCAGCCAGTTAGAAGCTAGGAAAA
AAGCAGATGTCACAGCCCATGTTTCTGGAGGCTCAGGAATTCCTGCTGCAGAGGCCCAGGCTCG
GAGGCCCAGGCTCGGAGGCCTGGCCTGGCCTGGCCTGCCCTGCTCCTGACACTTTGAATAAATT
TGTGTTTCTAGAGCCCGAGGGGGAGTTGTTGGGGGTGGGGATATCTAGGCCACCAATAAAGCCA
GCAGCTGGTCTGGGACAAGTGCCCAGCTTCCTCCAGCTGCCTGCCCTGAGCCCTGGGTGGCTAC
CAACCATGGGGCAAGGTCCGGGCGTCGGGAGGGAGCCAACTCCTTTGCCCTGGGCCTAGTATTC
CTGTTGAGTCCTGTTGGCAATAAACCCTGACTGTTGTTACCAGTGCCCTAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_008769266 ⟹ XP_008767488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,279,755 (-)	NCBI
mRatBN7.2	12	32,590,164 - 32,618,841 (-)	NCBI
Rnor_6.0	12	38,024,517 - 38,053,184 (-)	NCBI

Sequence:

show sequence

AGCCGGAGTGACTGGCGGGAGGGGCAGCGGCTCCTCCCCGTGCGGCGCGGCGCGCGGCCTCTGG
GTGCCTAGGCTCGAGCCGGTCGGTGACGCCTCATTCGCGCGGAGCCGGGCCGGGACAGGGTCGG
CGGCAGCATGAACAGCATCAAGAATGTGCCGGCGCGGGTGCTGAGCCGCAGGCCGGGCCATAGC
CTAGAGGCCGAGCGCGAGCAGTTCGACAAGACGCAGGCCATCAGTATCAGCAAAGCCATCAACA
GCCAGGAGGCCCCAGTGAAGGAGAAGCATGCCCGGCGTATCATTCTGGGCACTCACCATGAGAA
AGGAGCCTTTACCTTCTGGTCCTATGCCATCGGCCTGCCGCTGCCCAGCAGCTCCATCCTCAGT
TGGAAATTCTGTCACGTCCTTCACAAAGTCCTCCGAGATGGACACCCCAATGTGCTGCATGACT
GCCAGCGGTACCGGAGCAACATACGTGAGATTGGCGACTTGTGGGGCCACCTACGTGACCAGTA
TGGACACCTGGTGAATATCTATACCAAACTGCTGCTGACTAAAATCTCCTTCCACCTTAAGCAC
CCCCAGTTTCCTGCGGGCTTGGAGGTAACAGATGAAGTGTTGGAGAAGGCGGCGGGAACTGATG
TTAATAACATTTTTCAGCTCACTGTGGAGATGTTTGACTACATGGACTGTGAACTGAAGCTTTC
TGAGTCAGTTTTCCGGCAGCTCAACACAGCCATCGCAGTGTCACAGATGTCTTCTGGCCAGTGT
CGCCTGGCGCCGCTCATCCAGGTCATCCAGGACTGCAGCCACCTGTACCACTACACGGTGAAGC
TCATGTTCAAGCTCCACTCCTGTCTCCCAGCAGACACCCTGCAAGGCCACAGGGATCGGTTCCA
CGAGCAGTTTCACAGTCTCAGAAACTTCTTCCGCCGAGCCTCGGACATGCTCTACTTCAAGCGA
CTCATCCAGATCCCCAGACTGCCTGAGGGACCCCCCAATTTCCTGCGGGCCTCAGCCCTGGCTG
AGCACATCAAGCCGGTGGTGGTGATTCCAGAAGAGGCCCCGGAGGAGGAGGAGCCTGAGAACCT
AATTGAGATCAGCAGTGGGCCCCCTGCTGGGGAGCCAGTGCAGGTGGTGGCTGACCTCTTTGAT
CAGACCTTTGGACCCCCCAATGGCTCCATGAAGGATGACAGGGACCTCCAGATTGAGAACTTGA
AGAGAGAGGTGGAGACCCTCCGTGCTGAGCTGGAGAAGATTAAGATGGAGGCCCAGCGGTACAT
CTCGCAGCTGAAGGGCCAGGTGAACAGCCTGGAGGCAGAGCTGGAGGAGCAGCGGAAGCAGAAG
CAGAAGGCCCTGGTGGACAACGAGCAGCTGCGCCACGAGCTGGCCCAGCTGAAAGCCCTGCAGC
TGGAAGGCGCGCGCAACCAGGGCCTGCGAGAGGAGGCGGAGAGGAAGGCCAGTGCCACTGAGGC
ACGCTACAGCAAGCTGAAGGAGAAGCACAATGAACTCATTAACACGCATGCCGAGCTGCTCAGG
AAGAATGCAGACACAGCCAAGCAGCTGACGGTGACACAGCAGAGCCAGGAGGAGGTGGCACGGG
TAAAGGAGCAGCTGGCCTTCCAGATGGAGCAAGTGAAGCGGGAGTCTGAGATGAAGATGGAGGA
GCAGAGTGACCAGCTGGAGAAGCTCAAGAGGGAGCTGGTGGCCAAGGCAGGAGAGCTGGCCCAT
GCCCAGGAGGCCCTGAGCCGCACGGAACAGAGTGGGTCAGAGCTGAGCTCACGGCTAGATACAC
TGAACGCAGAGAAGGAAGCACTGAGCGGAGCCATTCGGCAGCGTGAGGCAGAGCTGCTGGCTGC
CCAGAGCCTGGTGCGGGAGAAGGAAGAGGCTCTTAGCCAAGAGCAGCAGCGCAGCGCCCAGGAG
AAGGGCGAGCTACAGGGGCGGCTGGCAGAAAAGGAGTCTCAGGAGCAGGGGCTCCAGCAGAAGC
TGCTGGATGAACAGTTTGCAGTGCTGCGAGGTGCAGCCGCCGAGGCGGAGGCCATCCTGCAGGA
CGCAGTGAGCAAGCTGGATGACCCCCTGCACCTCCGTTGCACCAGCTCCCCAGACTACTTAGTG
AGCCGGGCTCAGGCAGCCCTGGACAGCGTGAGTGGCCTGGAGAAGGGCCACACCCAGTACCTGG
CTTCCTCTGAGGCCTTGGCCTTTGTCCCTGCAGATGCTTCCGCCCTGGTAGCAGCACTGACCCG
CTTCTCCCATCTGGCCGCGGACACCATTGTCAACGGTGGCGCCACCTCGCACCTGGCCCCCACT
GACCCCGCTGACCGCCTGATCGACACGTGCAGGGAGTGTGGAGCCCGGGCTCTGGAGCTCATGG
GACAGCTGCAGGACCAGACAAAGCTACCGAGGGCCCAGCCCAGCCTGATGCGGGCCCCTCTGCA
GGGCATTCTTCAGTTGGGCCAGGACCTGAAGCCTAAGAGCCTGGACGTCCGGCAAGAGGAGCTA
GGGGCCATGGTTGACAAGGAGATGGCAGCCACCTCTGCAGCCATTGAGGACGCTGTGCGGAGGA
TCGAGGACATGATGAACCAGGCCCGCCACGAGAGCTCAGGGGTGAAACTAGAGGTGAACGAGAG
GATCCTCAACTCCTGCACAGATCTGATGAAGGCCATCCGGCTCCTGGTGATGACGTCCACCAGC
CTGCAGAAGGAGATTGTGGAGAGCGGCAGGGGGGCAGCAACACAGCAGGAATTTTATGCCAAGA
ATTCACGGTGGACTGAAGGCCTCATCTCTGCCTCGAAGGCAGTGGGCTGGGGAGCCACACAGCT
GGTGGAGTCAGCTGACAAGGTTGTGCTTCACATGGGCAAATATGAGGAACTCATCGTCTGCTCA
CACGAGATTGCAGCCAGCACTGCCCAGCTGGTGGCAGCCTCGAAGGTAAAAGCCAACAAGAACA
GTCCCCACCTGAGCCGCCTGCAGGAGTGTTCCCGCACTGTCAACGAGAGGGCTGCCAATGTGGT
GGCCTCCACCAAGTCTGGCCAGGAGCAGATCGAGGACAGAGACACCATGGATTTCTCTGGCCTG
TCTCTCATCAAGCTGAAGAAGCAGGAGATGGAGACACAGGTGCGAGTCTTGGAGCTGGAGAAGA
CGCTAGAGGCAGAGCGCGTACGGCTCGGGGAGCTTCGGAAGCAGCACTATGTACTGGCGGGGGG
CATGGGGACACCTGGCGAAGAAGAACCCAGCAGACCCAGCCCAGCTCCCCGAAGTGGGGCCACT
AAGAAGCCACCTCTTGCCCAGAAACCCAGCATAGCCCCCAGGCCGGACAACCAGCTCGACAAGA
AGGATGGTGTCTACCCAGCTCAACTTGTGAACTACTAGGCCCCCTAAGGTGTTCAGCAGTTTGG
CTGGGGGCTATGCCTGGGCTTCATGTGGCTGTCTGGCAGCGGTCAAGGGGCCTCTGAAAGGCCT
CCAACTCCTGCACCTGGAGCCCAAAGCAGTGTCCCTAAGGCCCCAGCCTTCACCTGCCCAAGGG
GCCTGGTCTCTGTGGGACAGTTCACGTGGATGTGACTCTATTTATCTCTAGTAGGAACTGCCCA
GAGCAGCTGGGACCCAGCAGGCCTGAGCCACAAATCTGCAGCGGACATCTGAGATGGCTTGAAC
GCTGCGAGTTCTTTCTTTCCTTGTAAGTTTAGTCAGCACACTGGGAAAAGGCCACAAGCCAGGG
CCTCCTTGCCTCTGGACTCAAAAGTCTGAGACCACAAGTGAACAACAGAAAGAGGGTCCCTGCT
GGCTATCGGGGATAAGGGGATGACCTGTGACCCCTGAGCCAGGGAGAGCAGGTAGGCTGGCTGG
GGTCATCATCTGGGGGCCTGGTGCTAGGGCACCCATGCTGGGAGCCCCAGGAGAGCAGGCTTTG
TGTGGGTGCCATGGCTGTGGGCAACCCCTGCTCAGGTGCTGTCTCTAGCCTTGAAGACCTGGAA
GCCGCCCTCACCCTTGCTGTTTCCATCCTTCTGGCTACTAGTGTGGCAGTCCACTGCCCACCTC
GATGGCCGATTCAGCCCTCCTAAAGCTGGGGCCTTCCAGCCAGTTAGAAGCTAGGAAAAAAGCA
GATGTCACAGCCCATGTTTCTGGAGGCTCAGGAATTCCTGCTGCAGAGGCCCAGGCTCGGAGGC
CCAGGCTCGGAGGCCTGGCCTGGCCTGGCCTGCCCTGCTCCTGACACTTTGAATAAATTTGTGT
TTCTAGAGCCCGAGGGGGAGTTGTTGGGGGTGGGGATATCTAGGCCACCAATAAAGCCAGCAGC
TGGTCTGGGACAAGTGCCCAGCTTCCTCCAGCTGCCTGCCCTGAGCCCTGGGTGGCTACCAACC
ATGGGGCAAGGTCCGGGCGTCGGGAGGGAGCCAACTCCTTTGCCCTGGGCCTAGTATTCCTGTT
GAGTCCTGTTGGCAATAAACCCTGACTGTTGTTACCAGTGCCCTAG

hide sequence

RefSeq Acc Id:

XM_008769267 ⟹ XP_008767489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,279,755 (-)	NCBI
mRatBN7.2	12	32,590,164 - 32,618,841 (-)	NCBI
Rnor_6.0	12	38,024,517 - 38,053,184 (-)	NCBI

Sequence:

show sequence

AGCCGGAGTGACTGGCGGGAGGGGCAGCGGCTCCTCCCCGTGCGGCGCGGCGCGCGGCCTCTGG
GTGCCTAGGCTCGAGCCGGTCGGTGACGCCTCATTCGCGCGGAGCCGGGCCGGGACAGGGTCGG
CGGCAGCATGAACAGCATCAAGAATGTGCCGGCGCGGGTGCTGAGCCGCAGGCCGGGCCATAGC
CTAGAGGCCGAGCGCGAGCAGTTCGACAAGACGCAGGCCATCAGTATCAGCAAAGCCATCAACA
GCCAGGAGGCCCCAGTGAAGGAGAAGCATGCCCGGCGTATCATTCTGGGCACTCACCATGAGAA
AGGAGCCTTTACCTTCTGGTCCTATGCCATCGGCCTGCCGCTGCCCAGCAGCTCCATCCTCAGT
TGGAAATTCTGTCACGTCCTTCACAAAGTCCTCCGAGATGGACACCCCAATGTGCTGCATGACT
GCCAGCGGTACCGGAGCAACATACGTGAGATTGGCGACTTGTGGGGCCACCTACGTGACCAGTA
TGGACACCTGGTGAATATCTATACCAAACTGCTGCTGACTAAAATCTCCTTCCACCTTAAGCAC
CCCCAGTTTCCTGCGGGCTTGGAGGTAACAGATGAAGTGTTGGAGAAGGCGGCGGGAACTGATG
TTAATAACATTTTTCAGCTCACTGTGGAGATGTTTGACTACATGGACTGTGAACTGAAGCTTTC
TGAGTCAGTTTTCCGGCAGCTCAACACAGCCATCGCAGTGTCACAGATGTCTTCTGGCCAGTGT
CGCCTGGCGCCGCTCATCCAGGTCATCCAGGACTGCAGCCACCTGTACCACTACACGGTGAAGC
TCATGTTCAAGCTCCACTCCTGTCTCCCAGCAGACACCCTGCAAGGCCACAGGGATCGGTTCCA
CGAGCAGTTTCACAGTCTCAGAAACTTCTTCCGCCGAGCCTCGGACATGCTCTACTTCAAGCGA
CTCATCCAGATCCCCAGACTGCCTGAGGGACCCCCCAATTTCCTGCGGGCCTCAGCCCTGGCTG
AGCACATCAAGCCGGTGGTGGTGATTCCAGAAGAGGCCCCGGAGGAGGAGGAGCCTGAGAACCT
AATTGAGATCAGCAGTGGGCCCCCTGCTGGGGAGCCAGTGGTGGTGGCTGACCTCTTTGATCAG
ACCTTTGGACCCCCCAATGGCTCCATGAAGGATGACAGGGACCTCCAGATTGAGAACTTGAAGA
GAGAGGTGGAGACCCTCCGTGCTGAGCTGGAGAAGATTAAGATGGAGGCCCAGCGGTACATCTC
GCAGCTGAAGGGCCAGGTGAACAGCCTGGAGGCAGAGCTGGAGGAGCAGCGGAAGCAGAAGCAG
AAGGCCCTGGTGGACAACGAGCAGCTGCGCCACGAGCTGGCCCAGCTGAAAGCCCTGCAGCTGG
AAGGCGCGCGCAACCAGGGCCTGCGAGAGGAGGCGGAGAGGAAGGCCAGTGCCACTGAGGCACG
CTACAGCAAGCTGAAGGAGAAGCACAATGAACTCATTAACACGCATGCCGAGCTGCTCAGGAAG
AATGCAGACACAGCCAAGCAGCTGACGGTGACACAGCAGAGCCAGGAGGAGGTGGCACGGGTAA
AGGAGCAGCTGGCCTTCCAGATGGAGCAAGTGAAGCGGGAGTCTGAGATGAAGATGGAGGAGCA
GAGTGACCAGCTGGAGAAGCTCAAGAGGGAGCTGGTGGCCAAGGCAGGAGAGCTGGCCCATGCC
CAGGAGGCCCTGAGCCGCACGGAACAGAGTGGGTCAGAGCTGAGCTCACGGCTAGATACACTGA
ACGCAGAGAAGGAAGCACTGAGCGGAGCCATTCGGCAGCGTGAGGCAGAGCTGCTGGCTGCCCA
GAGCCTGGTGCGGGAGAAGGAAGAGGCTCTTAGCCAAGAGCAGCAGCGCAGCGCCCAGGAGAAG
GGCGAGCTACAGGGGCGGCTGGCAGAAAAGGAGTCTCAGGAGCAGGGGCTCCAGCAGAAGCTGC
TGGATGAACAGTTTGCAGTGCTGCGAGGTGCAGCCGCCGAGGCGGAGGCCATCCTGCAGGACGC
AGTGAGCAAGCTGGATGACCCCCTGCACCTCCGTTGCACCAGCTCCCCAGACTACTTAGTGAGC
CGGGCTCAGGCAGCCCTGGACAGCGTGAGTGGCCTGGAGAAGGGCCACACCCAGTACCTGGCTT
CCTCTGAGGCCTTGGCCTTTGTCCCTGCAGATGCTTCCGCCCTGGTAGCAGCACTGACCCGCTT
CTCCCATCTGGCCGCGGACACCATTGTCAACGGTGGCGCCACCTCGCACCTGGCCCCCACTGAC
CCCGCTGACCGCCTGATCGACACGTGCAGGGAGTGTGGAGCCCGGGCTCTGGAGCTCATGGGAC
AGCTGCAGGACCAGACAAAGCTACCGAGGGCCCAGCCCAGCCTGATGCGGGCCCCTCTGCAGGG
CATTCTTCAGTTGGGCCAGGACCTGAAGCCTAAGAGCCTGGACGTCCGGCAAGAGGAGCTAGGG
GCCATGGTTGACAAGGAGATGGCAGCCACCTCTGCAGCCATTGAGGACGCTGTGCGGAGGATCG
AGGACATGATGAACCAGGCCCGCCACGAGAGCTCAGGGGTGAAACTAGAGGTGAACGAGAGGAT
CCTCAACTCCTGCACAGATCTGATGAAGGCCATCCGGCTCCTGGTGATGACGTCCACCAGCCTG
CAGAAGGAGATTGTGGAGAGCGGCAGGGGGGCAGCAACACAGCAGGAATTTTATGCCAAGAATT
CACGGTGGACTGAAGGCCTCATCTCTGCCTCGAAGGCAGTGGGCTGGGGAGCCACACAGCTGGT
GGAGTCAGCTGACAAGGTTGTGCTTCACATGGGCAAATATGAGGAACTCATCGTCTGCTCACAC
GAGATTGCAGCCAGCACTGCCCAGCTGGTGGCAGCCTCGAAGGTAAAAGCCAACAAGAACAGTC
CCCACCTGAGCCGCCTGCAGGAGTGTTCCCGCACTGTCAACGAGAGGGCTGCCAATGTGGTGGC
CTCCACCAAGTCTGGCCAGGAGCAGATCGAGGACAGAGACACCATGGATTTCTCTGGCCTGTCT
CTCATCAAGCTGAAGAAGCAGGAGATGGAGACACAGGTGCGAGTCTTGGAGCTGGAGAAGACGC
TAGAGGCAGAGCGCGTACGGCTCGGGGAGCTTCGGAAGCAGCACTATGTACTGGCGGGGGGCAT
GGGGACACCTGGCGAAGAAGAACCCAGCAGACCCAGCCCAGCTCCCCGAAGTGGGGCCACTAAG
AAGCCACCTCTTGCCCAGAAACCCAGCATAGCCCCCAGGCCGGACAACCAGCTCGACAAGAAGG
ATGGTGTCTACCCAGCTCAACTTGTGAACTACTAGGCCCCCTAAGGTGTTCAGCAGTTTGGCTG
GGGGCTATGCCTGGGCTTCATGTGGCTGTCTGGCAGCGGTCAAGGGGCCTCTGAAAGGCCTCCA
ACTCCTGCACCTGGAGCCCAAAGCAGTGTCCCTAAGGCCCCAGCCTTCACCTGCCCAAGGGGCC
TGGTCTCTGTGGGACAGTTCACGTGGATGTGACTCTATTTATCTCTAGTAGGAACTGCCCAGAG
CAGCTGGGACCCAGCAGGCCTGAGCCACAAATCTGCAGCGGACATCTGAGATGGCTTGAACGCT
GCGAGTTCTTTCTTTCCTTGTAAGTTTAGTCAGCACACTGGGAAAAGGCCACAAGCCAGGGCCT
CCTTGCCTCTGGACTCAAAAGTCTGAGACCACAAGTGAACAACAGAAAGAGGGTCCCTGCTGGC
TATCGGGGATAAGGGGATGACCTGTGACCCCTGAGCCAGGGAGAGCAGGTAGGCTGGCTGGGGT
CATCATCTGGGGGCCTGGTGCTAGGGCACCCATGCTGGGAGCCCCAGGAGAGCAGGCTTTGTGT
GGGTGCCATGGCTGTGGGCAACCCCTGCTCAGGTGCTGTCTCTAGCCTTGAAGACCTGGAAGCC
GCCCTCACCCTTGCTGTTTCCATCCTTCTGGCTACTAGTGTGGCAGTCCACTGCCCACCTCGAT
GGCCGATTCAGCCCTCCTAAAGCTGGGGCCTTCCAGCCAGTTAGAAGCTAGGAAAAAAGCAGAT
GTCACAGCCCATGTTTCTGGAGGCTCAGGAATTCCTGCTGCAGAGGCCCAGGCTCGGAGGCCCA
GGCTCGGAGGCCTGGCCTGGCCTGGCCTGCCCTGCTCCTGACACTTTGAATAAATTTGTGTTTC
TAGAGCCCGAGGGGGAGTTGTTGGGGGTGGGGATATCTAGGCCACCAATAAAGCCAGCAGCTGG
TCTGGGACAAGTGCCCAGCTTCCTCCAGCTGCCTGCCCTGAGCCCTGGGTGGCTACCAACCATG
GGGCAAGGTCCGGGCGTCGGGAGGGAGCCAACTCCTTTGCCCTGGGCCTAGTATTCCTGTTGAG
TCCTGTTGGCAATAAACCCTGACTGTTGTTACCAGTGCCCTAG

hide sequence

RefSeq Acc Id:

XM_063271699 ⟹ XP_063127769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,279,756 (-)	NCBI

RefSeq Acc Id:

XM_063271700 ⟹ XP_063127770

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,279,756 (-)	NCBI

RefSeq Acc Id:

XM_063271701 ⟹ XP_063127771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,279,755 (-)	NCBI

RefSeq Acc Id:

XM_063271702 ⟹ XP_063127772

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,279,755 (-)	NCBI

RefSeq Acc Id:

XM_063271703 ⟹ XP_063127773

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	38,251,085 - 38,269,874 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001128235	(Get FASTA)	NCBI Sequence Viewer
	NP_112513	(Get FASTA)	NCBI Sequence Viewer
	XP_008767488	(Get FASTA)	NCBI Sequence Viewer
	XP_008767489	(Get FASTA)	NCBI Sequence Viewer
	XP_063127769	(Get FASTA)	NCBI Sequence Viewer
	XP_063127770	(Get FASTA)	NCBI Sequence Viewer
	XP_063127771	(Get FASTA)	NCBI Sequence Viewer
	XP_063127772	(Get FASTA)	NCBI Sequence Viewer
	XP_063127773	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI69096	(Get FASTA)	NCBI Sequence Viewer
	BAB32404	(Get FASTA)	NCBI Sequence Viewer
	EDM13611	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000029635
	ENSRNOP00000029635.5

RefSeq Acc Id:	NP_112513 ⟸ NM_031234
- Peptide Label:	isoform 2
- UniProtKB:	B5DFK5 (UniProtKB/TrEMBL), Q99PW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSIKNVPARVLSRRPGHSLEAEREQFDKTQAISISKAINSQEAPVKEKHARRIILGTHHEKGA FTFWSYAIGLPLPSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRSNIREIGDLWGHLRDQYGH LVNIYTKLLLTKISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQLTVEMFDYMDCELKLSES VFRQLNTAIAVSQMSSGQCRLAPLIQVIQDCSHLYHYTVKLMFKLHSCLPADTLQGHRDRFHEQ FHSLRNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASALAEHIKPVVVIPEEAPEEEEPENLIE ISSGPPAGEPVVVADLFDQTFGPPNGSMKDDRDLQIENLKREVETLRAELEKIKMEAQRYISQL KGQVNSLEAELEEQRKQKQKALVDNEQLRHELAQLKALQLEGARNQGLREEAERKASATEARYS KLKEKHNELINTHAELLRKNADTAKQLTVTQQSQEEVARVKEQLAFQMEQVKRESEMKMEEQSD QLEKLKRELVAKAGELAHAQEALSRTEQSGSELSSRLDTLNAEKEALSGAIRQREAELLAAQSL VREKEEALSQEQQRSAQEKGELQGRLAEKESQEQGLQQKLLDEQFAVLRGAAAEAEAILQDAVS KLDDPLHLRCTSSPDYLVSRAQAALDSVSGLEKGHTQYLASSEDASALVAALTRFSHLAADTIV NGGATSHLAPTDPADRLIDTCRECGARALELMGQLQDQTKLPRAQPSLMRAPLQGILQLGQDLK PKSLDVRQEELGAMVDKEMAATSAAIEDAVRRIEDMMNQARHESSGVKLEVNERILNSCTDLMK AIRLLVMTSTSLQKEIVESGRGAATQQEFYAKNSRWTEGLISASKAVGWGATQLVESADKVVLH MGKYEELIVCSHEIAASTAQLVAASKVKANKNSPHLSRLQECSRTVNERAANVVASTKSGQEQI EDRDTMDFSGLSLIKLKKQEMETQVRVLELEKTLEAERVRLGELRKQHYVLAGGMGTPGEEEPS RPSPAPRSGATKKPPLAQKPSIAPRPDNQLDKKDGVYPAQLVNY hide sequence

RefSeq Acc Id:	NP_001128235 ⟸ NM_001134763
- Peptide Label:	isoform 1
- UniProtKB:	F1LML7 (UniProtKB/TrEMBL), Q99PW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSIKNVPARVLSRRPGHSLEAEREQFDKTQAISISKAINSQEAPVKEKHARRIILGTHHEKGA FTFWSYAIGLPLPSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRSNIREIGDLWGHLRDQYGH LVNIYTKLLLTKISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQLTVEMFDYMDCELKLSES VFRQLNTAIAVSQMSSGQCRLAPLIQVIQDCSHLYHYTVKLMFKLHSCLPADTLQGHRDRFHEQ FHSLRNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASALAEHIKPVVVIPEEAPEEEEPENLIE ISSGPPAGEPVQVVADLFDQTFGPPNGSMKDDRDLQIENLKREVETLRAELEKIKMEAQRYISQ LKGQVNSLEAELEEQRKQKQKALVDNEQLRHELAQLKALQLEGARNQGLREEAERKASATEARY SKLKEKHNELINTHAELLRKNADTAKQLTVTQQSQEEVARVKEQLAFQMEQVKRESEMKMEEQS DQLEKLKRELVAKAGELAHAQEALSRTEQSGSELSSRLDTLNAEKEALSGAIRQREAELLAAQS LVREKEEALSQEQQRSAQEKGELQGRLAEKESQEQGLQQKLLDEQFAVLRGAAAEAEAILQDAV SKLDDPLHLRCTSSPDYLVSRAQAALDSVSGLEKGHTQYLASSEDASALVAALTRFSHLAADTI VNGGATSHLAPTDPADRLIDTCRECGARALELMGQLQDQTKLPRAQPSLMRAPLQGILQLGQDL KPKSLDVRQEELGAMVDKEMAATSAAIEDAVRRIEDMMNQARHESSGVKLEVNERILNSCTDLM KAIRLLVMTSTSLQKEIVESGRGAATQQEFYAKNSRWTEGLISASKAVGWGATQLVESADKVVL HMGKYEELIVCSHEIAASTAQLVAASKVKANKNSPHLSRLQECSRTVNERAANVVASTKSGQEQ IEDRDTMDFSGLSLIKLKKQEMETQVRVLELEKTLEAERVRLGELRKQHYVLAGGMGTPGEEEP SRPSPAPRSGATKKPPLAQKPSIAPRPDNQLDKKDGVYPAQLVNY hide sequence

RefSeq Acc Id:	XP_008767489 ⟸ XM_008769267
- Peptide Label:	isoform X6
- UniProtKB:	Q99PW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSIKNVPARVLSRRPGHSLEAEREQFDKTQAISISKAINSQEAPVKEKHARRIILGTHHEKGA FTFWSYAIGLPLPSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRSNIREIGDLWGHLRDQYGH LVNIYTKLLLTKISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQLTVEMFDYMDCELKLSES VFRQLNTAIAVSQMSSGQCRLAPLIQVIQDCSHLYHYTVKLMFKLHSCLPADTLQGHRDRFHEQ FHSLRNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASALAEHIKPVVVIPEEAPEEEEPENLIE ISSGPPAGEPVVVADLFDQTFGPPNGSMKDDRDLQIENLKREVETLRAELEKIKMEAQRYISQL KGQVNSLEAELEEQRKQKQKALVDNEQLRHELAQLKALQLEGARNQGLREEAERKASATEARYS KLKEKHNELINTHAELLRKNADTAKQLTVTQQSQEEVARVKEQLAFQMEQVKRESEMKMEEQSD QLEKLKRELVAKAGELAHAQEALSRTEQSGSELSSRLDTLNAEKEALSGAIRQREAELLAAQSL VREKEEALSQEQQRSAQEKGELQGRLAEKESQEQGLQQKLLDEQFAVLRGAAAEAEAILQDAVS KLDDPLHLRCTSSPDYLVSRAQAALDSVSGLEKGHTQYLASSEALAFVPADASALVAALTRFSH LAADTIVNGGATSHLAPTDPADRLIDTCRECGARALELMGQLQDQTKLPRAQPSLMRAPLQGIL QLGQDLKPKSLDVRQEELGAMVDKEMAATSAAIEDAVRRIEDMMNQARHESSGVKLEVNERILN SCTDLMKAIRLLVMTSTSLQKEIVESGRGAATQQEFYAKNSRWTEGLISASKAVGWGATQLVES ADKVVLHMGKYEELIVCSHEIAASTAQLVAASKVKANKNSPHLSRLQECSRTVNERAANVVAST KSGQEQIEDRDTMDFSGLSLIKLKKQEMETQVRVLELEKTLEAERVRLGELRKQHYVLAGGMGT PGEEEPSRPSPAPRSGATKKPPLAQKPSIAPRPDNQLDKKDGVYPAQLVNY hide sequence

RefSeq Acc Id:	XP_008767488 ⟸ XM_008769266
- Peptide Label:	isoform X5
- UniProtKB:	Q99PW9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSIKNVPARVLSRRPGHSLEAEREQFDKTQAISISKAINSQEAPVKEKHARRIILGTHHEKGA FTFWSYAIGLPLPSSSILSWKFCHVLHKVLRDGHPNVLHDCQRYRSNIREIGDLWGHLRDQYGH LVNIYTKLLLTKISFHLKHPQFPAGLEVTDEVLEKAAGTDVNNIFQLTVEMFDYMDCELKLSES VFRQLNTAIAVSQMSSGQCRLAPLIQVIQDCSHLYHYTVKLMFKLHSCLPADTLQGHRDRFHEQ FHSLRNFFRRASDMLYFKRLIQIPRLPEGPPNFLRASALAEHIKPVVVIPEEAPEEEEPENLIE ISSGPPAGEPVQVVADLFDQTFGPPNGSMKDDRDLQIENLKREVETLRAELEKIKMEAQRYISQ LKGQVNSLEAELEEQRKQKQKALVDNEQLRHELAQLKALQLEGARNQGLREEAERKASATEARY SKLKEKHNELINTHAELLRKNADTAKQLTVTQQSQEEVARVKEQLAFQMEQVKRESEMKMEEQS DQLEKLKRELVAKAGELAHAQEALSRTEQSGSELSSRLDTLNAEKEALSGAIRQREAELLAAQS LVREKEEALSQEQQRSAQEKGELQGRLAEKESQEQGLQQKLLDEQFAVLRGAAAEAEAILQDAV SKLDDPLHLRCTSSPDYLVSRAQAALDSVSGLEKGHTQYLASSEALAFVPADASALVAALTRFS HLAADTIVNGGATSHLAPTDPADRLIDTCRECGARALELMGQLQDQTKLPRAQPSLMRAPLQGI LQLGQDLKPKSLDVRQEELGAMVDKEMAATSAAIEDAVRRIEDMMNQARHESSGVKLEVNERIL NSCTDLMKAIRLLVMTSTSLQKEIVESGRGAATQQEFYAKNSRWTEGLISASKAVGWGATQLVE SADKVVLHMGKYEELIVCSHEIAASTAQLVAASKVKANKNSPHLSRLQECSRTVNERAANVVAS TKSGQEQIEDRDTMDFSGLSLIKLKKQEMETQVRVLELEKTLEAERVRLGELRKQHYVLAGGMG TPGEEEPSRPSPAPRSGATKKPPLAQKPSIAPRPDNQLDKKDGVYPAQLVNY hide sequence

Ensembl Acc Id:

ENSRNOP00000029635 ⟸ ENSRNOT00000034264

RefSeq Acc Id:	XP_063127770 ⟸ XM_063271700
- Peptide Label:	isoform X2
- UniProtKB:	Q99PW9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127769 ⟸ XM_063271699
- Peptide Label:	isoform X1
- UniProtKB:	Q99PW9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127772 ⟸ XM_063271702
- Peptide Label:	isoform X4
- UniProtKB:	Q99PW9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127771 ⟸ XM_063271701
- Peptide Label:	isoform X3
- UniProtKB:	Q99PW9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127773 ⟸ XM_063271703
- Peptide Label:	isoform X7
- UniProtKB:	A6J122 (UniProtKB/TrEMBL)

Protein Domains

ENTH I/LWEQ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LML7-F1-model_v2	AlphaFold	F1LML7	1-1069	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698620

Promoter ID:

EPDNEW_R9145

Type:

initiation region

Name:

Hip1r_1

Description:

huntingtin interacting protein 1 related

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	38,053,088 - 38,053,148	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621615	AgrOrtholog
BioCyc Gene	G2FUF-19332	BioCyc
Ensembl Genes	ENSRNOG00000001091	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034264	ENTREZGENE
	ENSRNOT00000034264.6	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.1700	UniProtKB/TrEMBL
	1.25.40.90	UniProtKB/TrEMBL
	6.10.250.920	UniProtKB/TrEMBL
	I/LWEQ domain	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7456661	IMAGE-MGC_LOAD
InterPro	ANTH	UniProtKB/TrEMBL
	ENTH_VHS	UniProtKB/TrEMBL
	Epsin-like_N	UniProtKB/TrEMBL
	HIP1_clath-bd	UniProtKB/TrEMBL
	I/LWEQ_dom_sf	UniProtKB/TrEMBL
	ILWEQ	UniProtKB/TrEMBL
	Sla2_fam	UniProtKB/TrEMBL
KEGG Report	rno:81917	UniProtKB/TrEMBL
MGC_CLONE	MGC:116284	IMAGE-MGC_LOAD
NCBI Gene	81917	ENTREZGENE
PANTHER	PTHR10407	UniProtKB/TrEMBL
	PTHR10407:SF10	UniProtKB/TrEMBL
Pfam	ANTH	UniProtKB/TrEMBL
	HIP1_clath_bdg	UniProtKB/TrEMBL
	I_LWEQ	UniProtKB/TrEMBL
PhenoGen	Hip1r	PhenoGen
PROSITE	ENTH	UniProtKB/TrEMBL
	I_LWEQ	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000001091	RatGTEx
SMART	ENTH	UniProtKB/TrEMBL
	ILWEQ	UniProtKB/TrEMBL
Superfamily-SCOP	ENTH_VHS	UniProtKB/TrEMBL
	SSF109885	UniProtKB/TrEMBL
UniProt	A6J122	ENTREZGENE, UniProtKB/TrEMBL
	B5DFK5	ENTREZGENE, UniProtKB/TrEMBL
	F1LML7	ENTREZGENE, UniProtKB/TrEMBL
	Q99PW9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Hip1r	huntingtin interacting protein 1 related			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Hip1r	huntingtin interacting protein 1 related			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to small vesicular structures in post-synaptic spines	708599

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD