Advanced Search (OLGA)

Gene: Atxn3 (ataxin 3) Rattus norvegicus

Analyze

Symbol:

Atxn3

Name:

ataxin 3

RGD ID:

621567

Description:

Enables RNA polymerase II transcription regulatory region sequence-specific DNA binding activity; histone deacetylase binding activity; and transcription corepressor binding activity. Contributes to histone deacetylase activity. Involved in protein modification process. Predicted to be located in several cellular components, including endoplasmic reticulum membrane; mitochondrion; and nucleus. Predicted to be active in lysosomal membrane and nucleus. Human ortholog(s) of this gene implicated in Machado-Joseph disease and late onset Parkinson's disease. Orthologous to human ATXN3 (ataxin 3); PARTICIPATES IN mitochondrial autophagy pathway; Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 17beta-estradiol; 4,4'-diaminodiphenylmethane; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ataxin-3; machado-Joseph disease protein 1 homolog; MJD1; Rsca3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATXN3 (ataxin 3)	HGNC	EggNOG, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Atxn3 (ataxin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atxn3 (ataxin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATXN3 (ataxin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATXN3 (ataxin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atxn3 (ataxin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATXN3 (ataxin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATXN3 (ataxin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atxn3 (ataxin 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ATXN3L (ataxin 3 like)	HGNC	Panther, Treefam
Alliance orthologs ³
Mus musculus (house mouse):	Atxn3 (ataxin 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ATXN3 (ataxin 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	atxn3 (ataxin 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	atx-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	atxn3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	126,837,107 - 126,872,919 (-)	NCBI		GRCr8
mRatBN7.2	6	121,072,228 - 121,107,902 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	121,074,448 - 121,107,902 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	121,223,964 - 121,257,484 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	121,519,222 - 121,552,743 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	120,855,537 - 120,889,057 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	125,817,420 - 125,853,461 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	125,819,640 - 125,853,461 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	126,196,043 - 126,229,844 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	126,199,789 - 126,233,591 (-)	NCBI
Celera	6	118,571,601 - 118,605,060 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

achondrogenesis type IA (ISO)

atrophic muscular disease (ISO)

Cataplexy (ISO)

genetic disease (ISO)

late onset Parkinson's disease (ISO)

Machado-Joseph disease (ISO)

Nerve Degeneration (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(-)-epigallocatechin 3-gallate (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

aluminium atom (ISO)

aluminium(0) (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

chlorpyrifos (ISO)

chrysene (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cocaine (ISO)

colforsin daropate hydrochloride (ISO)

copper(II) sulfate (ISO)

dicrotophos (ISO)

diethylstilbestrol (EXP)

dinophysistoxin 1 (ISO)

disulfiram (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

flavonoids (EXP)

formaldehyde (ISO)

hypochlorous acid (ISO)

L-serine (ISO)

mercury atom (ISO)

mercury(0) (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

okadaic acid (ISO)

oxidopamine (EXP)

ozone (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

poly(I:C) (EXP)

potassium chromate (ISO)

quercetin (ISO)

quercetin 3-O-beta-D-glucofuranoside (EXP)

quercetin 3-O-beta-D-glucopyranoside (EXP)

rac-lactic acid (ISO)

raloxifene (ISO)

resveratrol (ISO)

rotenone (ISO)

rutin (EXP)

Salinomycin (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

succimer (ISO)

tamoxifen (ISO)

tert-butyl hydroperoxide (ISO)

thiram (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (ISO,ISS)

cellular response to amino acid starvation (ISO,ISS)

cellular response to heat (IEA,ISO)

cellular response to misfolded protein (IEA,ISO,ISS)

exploration behavior (IEA,ISO)

intermediate filament cytoskeleton organization (ISO,ISS)

microtubule cytoskeleton organization (ISO,ISS)

monoubiquitinated protein deubiquitination (IEA,ISO,ISS)

negative regulation of TORC1 signaling (IBA,ISO,ISS)

positive regulation of ERAD pathway (IBA,ISO)

positive regulation of ubiquitin-dependent protein catabolic process (ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (IBA,IEA,ISO,ISS)

protein deubiquitination (IEA)

protein K48-linked deubiquitination (ISO,ISS)

protein K63-linked deubiquitination (ISO,ISS)

protein localization to cytosolic proteasome complex (ISO)

protein modification process (IDA)

protein quality control for misfolded or incompletely synthesized proteins (IBA,IEA,ISO,ISS)

proteolysis (IEA)

regulation of cell-substrate adhesion (IEA,ISO,ISS)

ubiquitin-dependent protein catabolic process (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO,ISS)

endoplasmic reticulum membrane (ISO)

lysosomal membrane (ISO,ISS)

mitochondrial matrix (IEA,ISO)

mitochondrial membrane (IEA,ISO)

nuclear inclusion body (IEA,ISO)

nuclear matrix (IEA)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO)

plasma membrane (ISO)

Molecular Function

ATPase binding (ISO,ISS)

cysteine-type deubiquitinase activity (IBA,IEA,ISO,ISS)

histone deacetylase activity (IDA)

histone deacetylase binding (IPI)

identical protein binding (ISO,ISS)

K48-linked deubiquitinase activity (ISO,ISS)

K63-linked deubiquitinase activity (ISO,ISS)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IDA)

transcription corepressor binding (IPI)

ubiquitin protein ligase binding (IEA,ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

Endoplasmic Reticulum-associated degradation pathway (IEA)

mitochondrial autophagy pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Striatal and nigral pathology in a lentiviral rat model of Machado-Joseph disease.	Alves S, etal., Hum Mol Genet. 2008 Jul 15;17(14):2071-83. Epub 2008 Apr 1.
2.	Silencing ataxin-3 mitigates degeneration in a rat model of Machado-Joseph disease: no role for wild-type ataxin-3?	Alves S, etal., Hum Mol Genet. 2010 Jun 15;19(12):2380-94. doi: 10.1093/hmg/ddq111. Epub 2010 Mar 22.
3.	Allele-specific RNA silencing of mutant ataxin-3 mediates neuroprotection in a rat model of Machado-Joseph disease.	Alves S, etal., PLoS One. 2008 Oct 8;3(10):e3341. doi: 10.1371/journal.pone.0003341.
4.	Expression of a poly-glutamine-ataxin-3 transgene in orexin neurons induces narcolepsy-cataplexy in the rat.	Beuckmann CT, etal., J Neurosci 2004 May 5;24(18):4469-77.
5.	The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.	Durcan TM and Fon EA, Genes Dev. 2015 May 15;29(10):989-99. doi: 10.1101/gad.262758.115.
6.	Ataxin-3 represses transcription via chromatin binding, interaction with histone deacetylase 3, and histone deacetylation.	Evert BO, etal., J Neurosci. 2006 Nov 1;26(44):11474-86.
7.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8.	CAG expansions in a novel gene for Machado-Joseph disease at chromosome 14q32.1.	Kawaguchi Y, etal., Nat Genet. 1994 Nov;8(3):221-8.
9.	Characterization of the structure and the amyloidogenic properties of the Josephin domain of the polyglutamine-containing protein ataxin-3.	Masino L, etal., J Mol Biol 2004 Dec 3;344(4):1021-35.
10.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
11.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
12.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
13.	GOA pipeline	RGD automated data pipeline
14.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
16.	Comprehensive gene review and curation	RGD comprehensive gene curation
17.	Information Derived from GenBank Report	RGD, Sept. 2003
18.	An isoform of ataxin-3 accumulates in the nucleus of neuronal cells in affected brain regions of SCA3 patients.	Schmidt T, etal., Brain Pathol. 1998 Oct;8(4):669-79.

Additional References at PubMed

PMID:10732811	PMID:12486728	PMID:16525503	PMID:17000876	PMID:17626202	PMID:17764659	PMID:18353661	PMID:19542537	PMID:19666135	PMID:19843543	PMID:20347968	PMID:20637808
PMID:20940148	PMID:21855799	PMID:22129356	PMID:22970133	PMID:24063750	PMID:24068323	PMID:24548080	PMID:25143392	PMID:26880203

Genomics

Comparative Map Data

Atxn3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	126,837,107 - 126,872,919 (-)	NCBI		GRCr8
mRatBN7.2	6	121,072,228 - 121,107,902 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	121,074,448 - 121,107,902 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	121,223,964 - 121,257,484 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	121,519,222 - 121,552,743 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	120,855,537 - 120,889,057 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	125,817,420 - 125,853,461 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	125,819,640 - 125,853,461 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	126,196,043 - 126,229,844 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	126,199,789 - 126,233,591 (-)	NCBI
Celera	6	118,571,601 - 118,605,060 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

ATXN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	92,044,775 - 92,106,582 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	92,044,496 - 92,106,621 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	92,511,119 - 92,572,926 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	91,598,883 - 91,642,707 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	72,577,489 - 72,625,559 (-)	NCBI		Celera
Cytogenetic Map	14	q32.12	NCBI
HuRef	14	72,705,822 - 72,754,183 (-)	NCBI		HuRef
CHM1_1	14	92,463,194 - 92,511,266 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	86,274,279 - 86,336,122 (-)	NCBI		T2T-CHM13v2.0

Atxn3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	101,885,160 - 101,928,139 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	101,885,160 - 101,924,505 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	101,918,901 - 101,959,121 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	101,918,901 - 101,958,246 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	103,157,111 - 103,196,453 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	102,320,604 - 102,359,232 (-)	NCBI		MGSCv36	mm8
Celera	12	103,135,861 - 103,175,388 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	51.32	NCBI

Atxn3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	14,405,643 - 14,440,009 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	14,405,415 - 14,443,457 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATXN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	93,222,124 - 93,265,437 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	92,433,581 - 92,481,947 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	72,693,446 - 72,741,772 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	92,041,114 - 92,083,840 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

ATXN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	1,318,440 - 1,354,814 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	1,247,155 - 1,354,720 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	1,337,255 - 1,373,511 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	1,367,340 - 1,403,659 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	1,367,738 - 1,403,671 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	1,305,295 - 1,341,558 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	1,261,283 - 1,297,915 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	1,382,578 - 1,418,851 (-)	NCBI		UU_Cfam_GSD_1.0

Atxn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	13,119,860 - 13,160,641 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936733	310,836 - 347,112 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936733	306,400 - 347,161 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATXN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	113,608,783 - 113,645,841 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	113,611,566 - 113,645,835 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	120,219,165 - 120,253,437 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATXN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	69,810,433 - 69,855,308 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666053	57,057,799 - 57,105,141 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atxn3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	8,685,994 - 8,726,329 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Atxn3
70 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1288
Count of miRNA genes:	348
Interacting mature miRNAs:	489
Transcripts:	ENSRNOT00000007505
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	104085867	128713626	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	106752656	132339866	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	105156861	140994061	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	100364669	140994061	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	112636280	140994061	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	116506292	130245370	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	100671796	132340886	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat
1300076	Glom8	Glomerulus QTL 8	7	9e-09	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_021702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240486	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y12319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007505 ⟹ ENSRNOP00000007505

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	121,074,448 - 121,107,902 (-)	Ensembl
Rnor_6.0 Ensembl	6	125,819,640 - 125,853,461 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098027 ⟹ ENSRNOP00000086715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	121,074,448 - 121,100,548 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099444 ⟹ ENSRNOP00000091691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	121,074,448 - 121,107,902 (-)	Ensembl

RefSeq Acc Id:

NM_021702 ⟹ NP_067734

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,839,327 - 126,872,781 (-)	NCBI
mRatBN7.2	6	121,074,448 - 121,107,902 (-)	NCBI
Rnor_6.0	6	125,819,640 - 125,853,461 (-)	NCBI
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI
RGSC_v3.4	6	126,196,043 - 126,229,844 (-)	RGD
Celera	6	118,571,601 - 118,605,060 (-)	RGD

Sequence:

show sequence

CACGTGGGTAGGGCGGGGCGGGCCGGGGCGGAGGGGTGGGGCCGGGGGCGGAGCTGCTGGAGGG
GGCTGCTCCGCGCCGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAA
ACAAGAAGGCTCCCTTTGCGCTCAGCATTGCTTGAATAACCTCTTACAAGGAGAGTATTTTAGC
CCCGTGGAGCTGTCCTCAATTGCACACCAGCTGGATGAAGAGGAGAGGCTGCGGATGGCGGAAG
GAGGGGTCACGAGCGAAGACTACCGCACATTTTTACAGCAGCCTTCTGGAAATATGGACGACAG
CGGCTTTTTCTCTATTCAAGTTATAAGCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTA
TTCAACAGTCCAGAGTACCAGAGGCTCAGAATCGATCCTATAAATGAAAGATCCTTTATATGCA
ATTATAAAGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTTT
GTTGACTGGTCCAGAGCTAATATCAGATACATACCTCGCACTGTTCTTGGCTCAGTTACAGCAA
GAAGGTTATTCTATATTTGTTGTTAAGGGTGATCTGCCAGATTGTGAAGCTGACCAACTTTTAC
AGATGATCAAGGTCCAACAGATGCATCGACCAAAACTTATTGGAGAAGAACTCGCACATCTGAA
AGAGCAGAGCGCCCTCAAAGCAGATCTGGAGCGAGTCTTAGAGGCGGCTGACGGGCCGGGAATG
TTTGATGATGATGAGGACGATTTACAGAGGGCTCTGGCCATGAGTCGCCAGGAAATCGACATGG
AGGACGAAGAAGCCGATCTCCGCAGGGCCATTCAGCTCAGTATGCAAGGTAGTTCCAGAGGTAT
GTGTGAAGATAGTCCGCAGACATCAAGCACAGATCTTTCTTCAGAAGAGCTGCGGAAGAGGAGA
GAAGCCTACTTTGAAAAGCAACAGCATCAGCAACAGGAAGCAGACCGACCTGGATACCTTTCAT
ACCCATGTGAAAGACCCACCACAAGTTCAGGAGGACTCCGGAGCAACCAAGCAGGCAATGCTAT
GAGTGAAGAGGACGTGCTTCGGGCAACTGTGACTGTGTCTTTAGAAACTGCTAAAGACAGTTTG
AAAGCAGAAAGAAAAAAATAGTCCCTTTAAAAATCATTTTGCCACCATGCTTTGTACCATTGTT
TGTGTGATCACAGTGTAAGGTCCACTTTGGCAGCAGTGTGTTCACCGGAAGGCAGCAGACACTG
CATGGTTTGTAAGCAGAAAGGGCAGAAGCGTCCTAGGACTAAAGAACCACGAGATGCTAGCCAA
AGAGGCAGTCAGCAATGAAAGAAACAACGTAGTTTTCTAAATGTCCCTCCTTGTTTTTCAAATG
TGCAATATCTGACTGAAATTATGGAATTTTCCTTGGCTCTTTTGGACCAACTCGTTAGCTCTTG
CCACAGAACTTGATCCTGTAGAGTTCCGTCTTCTCTCTGCATTGGAGCTGGCTTGGCTTGTTTG
GGCTTTTCTTCATTTCACACCAACCTTTTGTGAAATATCGTTTGTATGTCTTGCTATGGAAAGA
TCAGTCTGTCTTTTCGTGTATGTGTCAGGCACATGGATGCTTCCTGGTGTTATTTTCTCTGGTT
TTGGTTATTTTCCTGCAAGTCTAACATGGTGATCTGTTGGTTTTAAAGCCTTTTTTAGTGGGAT
CATTATTTAACTCTGGTGCATTCCTCTACTCTAAAGTCAGCCCTGTTCTTCTAAACGAGCTGAG
GTTTTTTGTGAGCACGTGCTTTCTCGATGCCCTGCGAAGGATTTCAGCTGTGTCCTGGCTGACT
TATTTCCTTTCTTTTCCAGTTGAGAAAGGAGAGACAGAGGATACAAATATATTTCCTTCTACTT
AACGTTCTCCATGAATGTACCACAGGAGAACCCGCCCTTCAGTGCTGGTGGTGGGTTCGTTCCA
GTGTTTCTTCTGTGTCAAGAGCTTAGTGTTCTGTATATGATTAAGTCCTGGAAAATAGGTGCCT
GCTTCACTTTTTAATTTTTAAAAATAAATTTTTTTTTATTTTAGTAGAAAATAGGCTGCTAGGA
TGATGGTCTAGGATGTGAAAGTAATTTACTAATGAAAATATATTTAAATATACTGTGGTTGACC
CTTGCTACCATGTTAAAATTGTTAAGAATTACAGAAGTCACAATACTTAAAGGATCTGTTTGTA
AATACGAAAGTCCTTAGTTTTGATAAACATTAAGTGAGATGCACATCTAGTCTTGCTGGGTCAA
TGCTTTGGTATGATTTGGGTGGAAATTAACTATTGTGTGTTTGTCCTGGGTGTCATAGATCCTG
ATACTGTTTTCCCCTCCCTACCCTTTTTGAAGCCCCTTTGAATGTTAACTTGTACATAGGTAAA
ATCAAGAAGAAATTTTAGCCAACAGCTTAATAAGGTGAAGCATGGTATATTGCTCTACTGATGT
GTGTTCTGCACACGCTTTTATCAGGGAAACGTTTTGATGTAGGATTTATTGCTATCTAACTGAA
AATGATACAAATATTTTTATTTATGATTATGAAATAGCTTTCTCTTGGATAGGATGGATTGTTT
TGTTTGGCTGTGCATGGGATTGAACCCAGAGCCTCGTGTGTGCTAGGTAAGCGCTCTACCTCTG
AGCTAGATCCCCAGATCCAAAACATGTGTTTCTCTTTTTTGTTTTGTTTTTTTTTCTTAGCCAT
TTTGTGCCAATTACAGTTTCTCTTTTTGAAATTTGCCTCATGAAAAATTAGACAGTCCTATTTT
CAAATCTATGAAGTTTTCTTTTAGTAATTGCAAAGGTTCAGAATTATGCAGCTGTAGGCTGTTG
GGTTAGGCCTTTGCTTACAGTGGATTTTTACACTGAAGTATGCAGCTACCCCAAGTGTGCTGGT
CACATGTCGAGCATTGACCCTTTCCTTTACCCTTTGAAAAACCACATTACACTTTCCGCACACT
CAGATTGATGTGCTGCCTGACAGCCATTTCAGTTTTAACTTCAGAGTTTATAAAACGTTCATG

hide sequence

RefSeq Acc Id:

XM_006240485 ⟹ XP_006240547

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,771 (-)	NCBI
mRatBN7.2	6	121,072,228 - 121,107,867 (-)	NCBI
Rnor_6.0	6	125,817,420 - 125,853,418 (-)	NCBI
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI

Sequence:

show sequence

GGGGGCGGAGCTGCTGGAGGGGGCTGCTCCGCGCCGGGGCCGTTGGCTCCAGACAAATAAACAT
GGAGTCCATCTTCCACGAGAAACAAGAAGGCTCCCTTTGCGCTCAGCATTGCTTGAATAACCTC
TTACAAGGAGAGTATTTTAGCCCCGTGGAGCTGTCCTCAATTGCACACCAGCTGGATGAAGAGG
AGAGGCTGCGGATGGCGGAAGGAGGGGTCACCAGCGAAGACTACCGCACATTTTTACAGCAGCC
TTCTGGAAATATGGACGACAGCGGCTTTTTCTCTATTCAAAGTCCCTATTCTCTAGCATTTCCA
CCCAGGACTTCGCTTGTTCACCTTGGGAGGCCCAGTGGGCCTGAGCTGAGAGCAGAGGTTATAA
GCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTATTCAACAGTCCAGAGTACCAGAGGCT
CAGAATCGATCCTATAAATGAAAGATCCTTTATATGCAATTATAAAGAACACTGGTTTACAGTT
AGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTTTGTTGACTGGTCCAGAGCTAATATCAG
ATACATACCTCGCACTGTTCTTGGCTCAGTTACAGCAAGAAGGTTATTCTATATTTGTTGTTAA
GGGTGATCTGCCAGATTGTGAAGCTGACCAACTTTTACAGATGATCAAGGTCCAACAGATGCAT
CGACCAAAACTTATTGGAGAAGAACTCGCACATCTGAAAGAGCAGAGCGCCCTCAAAGCAGATC
TGGAGCGAGTCTTAGAGGCGGCTGACGGGCCGGGAATGTTTGATGATGATGAGGACGATTTACA
GAGGGCTCTGGCCATGAGTCGCCAGGAAATCGACATGGAGGACGAAGAAGCCGATCTCCGCAGG
GCCATTCAGCTCAGTATGCAAGGTAGTTCCAGAGGTATGTGTGAAGATAGTCCGCAGACATCAA
GCACAGATCTTTCTTCAGAAGAGCTGCGGAAGAGGAGAGAAGCCTACTTTGAAAAGCAACAGCA
TCAGCAACAGGAAGCAGACCGACCTGGATACCTTTCATACCCATGTGAAAGACCCACCACAAGT
TCAGGAGGACTCCGGAGCAACCAAGCAGGCAATGCTATGAGTGAAGAGGACGTGCTTCGGGCAA
CTGTGACTGTGTCTTTAGAAACTGCTAAAGACAGTTTGAAAGCAGAAAGAAAAAAATAGTCCCT
TTAAAAATCATTTTGCCACCATGCTTTGTAACATTGTTTGTGTGATCACAGTGTAAGGTCCACT
TTGGCAGCAGTGTGTTCACCGGAAGGCAGCAGACACTGCATGGTTTGTAAGCAGAAAGGGCAGA
AGCGTCCTAGGACTAAAGAACCACGAGATGCTAGCCAAAGAGGCAGTCAGCAATGAAAGAAACA
ACGTAGTTTTCTAAATGTCCCTCCTTGTTTTTCAAATGTGCAATATCTGACTGAAATTATGGAA
TTTTCCTTGGCTCTTTTGGACCAACTCGTTAGCTCTTGCCACAGAACTTGATCCTGTAGAGTTC
CGTCTTCTCTCTGCATTGGAGCTGGCTTGGCTTGTTTGGGCTTTTCTTCATTTCACACCAACCT
TTTGTGAAATATCGTTTGTATGTCTTGCTATGGAAAGATCAGTCTGTCTTTTCGTGTATGTGTC
AGGCACATGGATGCTTCCTGGTGTTATTTTCTCTGGTTTTGGTTATTTTCCTGCAAGTCTAACA
TGGTGATCTGTTGGTTTTAAAGCCTTTTTTAGTGGGATCATTATTTAACTCTGGTGCATTCCTC
TACTCTAAAGTCAGCCCTGTTCTTCTAAACGAGCTGAGGTTTTTTGTGAGCACGTGCTTTCTCG
ATGCCCTGCGAAGGATTTCAGCTGTGTCCTGGCTGACTTATTTCCTTTCTTTTCCAGTTGAGAA
AGGAGAGACAGAGGATACAAATATATTTCCTTCTACTTAACGTTCTCCATGAATGTACCACAGG
AGAACCCGCCCTTCAGTGCTGGTGGTGGGTTCGTTCCAGTGTTTCTTCTGTGTCAAGAGCTTAG
TGTTCTGTATATGATTAAGTCCTGGAAAATAGGTGCCTGCTTCACTTTTTAATTTTTAAAAATA
AATTTTTTTTTATTTTAGTAGAAAATAGGCTGCTAGGATGATGGTCTAGGATGTGAAAGTAATT
TACTAATGAAAATATATTTAAATATACTGTGGTTGACCCTTGCTACCATGTTAAAATTGTTAAG
AATTACAGAAGTCACAATACTTAAAGGATCTGTTTGTAAATACGAAAGTCCTTAGTTTTGATAA
ACATTAAGTGAGATGCACATCTGGTCTTGCTGGGTCAATGCTTTGGTATGATTTGGGTGGAAAT
TAACTATGTGTGTTTGTCCTGGGTGTCATAGATCCTGATACTGTTTTCCCCTCCCTACCCTTTT
TGAAGCCCCTTTGAATGTTAACTTGTACATAGGTAAAATCAAGAAGAAATTTTAGCCAACAGCT
TAGTAAGGTGAAGCATGGTATATTGCTCTACTGATGTGTGTTCTGCACACGTTTTTATCAGGGA
AAGTTTTTGATGTAGGATTTATTGCTATCTAACTGAAAATGATACAAATATTTTTATTTATGAT
TATGAAATAGCTTTCTCTTGGATAGGATGGATTGTTTTGTTTGGCTGTGCTAGGGATTGAACCC
AGAGCCTCGTGTGTGCTAGGTAAGCGCTCTACCTCTGAGCTAGATCCCCAGATCCAAAACATGT
GTTTCTCTTTTGTTTGTTTTTTTTCTTAGCCATTTTGTGCCAATTACAGTTTCTCTTTTTGAAA
TTTGCCTCATGAAAAATTAGACAGTCCTATTTTCAAATCTATGAAGTTTTCTTTTAGTAATTGC
AAAGGTTCAGAATTATGCAGCTGTAGGCTGTTGGGTTAGGCCTTTGCTTACAGTGGATTTTTAC
ACTGAAGTATGCAGCTACCCCAAGTGTGCTGGTCACATGTCGAGCATTGACCCTTTCCTTTACC
CTTTGAAAAACCACATTACACTTTCCGCACACTCAGATTGATGTGCTGCCTGACAGCCATTTCA
GTTTTAACTTCAGAGTTTATAAAACGTTCATGTAACACACCCTACGTAAATCATGTATGAAATA
CAGCATGTTGATCTTTTATTAGAAATGTTTTAAAGAGAAACTGAGTGTACACTGAATATATTTG
AGTGCATTTTTTAAGTTTGTTATAAATTGTGGTATTTGTCCAGGCAAATCCAAAATCACCATTG
AACTGCCATCCCTTCTATTGACCTAGGCTTACCTAAACATTTAGATTCATTATTAATGAGTAGG
CAGCATGAAAAGATGCCAATGCTTATTATAACCACAGTATCCAAAGTGTAAGAGTTGTATGACA
TTCACGTCCGTACACAGGAGCTGCTGTTTACAGTACTGCAGGATAGATGGGCCAGGGACTCCGC
TGTCATGGTCCTGTTATGGACTTAACTGACATTTCCATTCTGTTTTTACCAATTGGAATACTTT
AATGTTTAATATTTAAACTACTGATACCATTTTTCTAATGTGTAACTTATACTACCAAATAAAA
TATGTACAGCCAGAATGCTAGTGTTAGAACCAAGAGTAGGAACCCTCTGGAGACCAGGCATGGT
GCTACATGCCTTCAATCCCCGTGCCTGGGAGTCAGAGGCAGGCAGATTGCTTTTTGAGTTCAAA
GCCAGTCTAGTCTACAGAGTAAGTTCCAAACTTGCTGCAGCTGCATAGTAGGACTCTGTCTTTA
AAACAAAACAAAACACAACACAACACAACACAACAAAAACCTTTGGGACATTTCATTGATTAGA
TGGTTTGATACAGTCAGTGCAGGTGAACTCCACGGTGAAGTTTTAAATGTTGGCCAAATAATTT
ACACTTCACAGACTATCTGAGGCGGTGCTTTTTTTTTTTTCCTGAAAACTTGATTTTTCTTGAT
GAAGCCAAAGTTAATGAGGATGAATTCTCAAAAGGAGTAGTCTGCATTGCTTTATTTAATATCA
GGTTGAGTAAAATAAGTTTTATTCATGTCAGAGTCTAAGCCACAGATTTTGAATACCTGAATGT
TTGGTACTATTTAAATCATGCCAGTGCCAAGAATTACTAAGTTCTTAGAACTGGCCCCTGTGCC
ATGCCTGAGTCCAGATTGGGCAGTGCAGAACCCAGATGTGCTATCCGAGAGTCTGAAGCTGGGG
AGTCTGATGTTTTAGTCAGGAAGAGGCTTCAGTTAATACCGAAACCTCCAGAGACAGGTTATTG
TCAGGCAGTGCCATGTGCTCAGTGGTAGAGCAGCCACCTAGAGGCCCAGGCCTTGTGCTCAGTC
CCTAACACTGCAAAAGAAGAACAGGGGCTCACAGTGAATCCACGTTCAGAGAGGCCTTACAGGG
AGTATTTTCCAAGGGAGTTGTTTGTTGTAGTTTAGTCCTAACAAGTGTAGAGCTGTAATAGGTG
ACCTTAAGAAAAACCAGGTGGCATCAGCTAATCAGTACAGAGTTTTTTGGTTTTCATATTTAGA
AACTCTCCCTTTATTCCTAATTCGTTTATAATTAAAGACAAGAATTGGTTTTGTATTTTTCAAA
GTTTTATGCATAATAAAATGTTTTGTTGTAGTCTTTCAGGAATGAAAAGGATATTGACTTTTTT
TTTAAAATTTGAGGTGTGTGTGTGTGTGTGTGTGTGCGCACATGTGTGTGTGTGCAAGCACCTA
AAATGGGTCTGTCATTTTAAGAATTAGCACAAAAAATATAGTCCCTGTTATGGAGGTTTAATAA
TACCAGTACACATTGTAAGTGCAGTCCTAGGTGAGGCACTAGTGAGAAGTGTGTGGAAAATGCA
GTTACCTAGGTAGGACTCACTTGTCTCTTAAGTAGTTTAAAGGTAGTATGTTTCCTGGAATTTT
TTAATGTTTTTTTTTCTTTTTTTTGAGGAAGATAGACATTTGAAATGTGATTATCTAATTTCTA
TAACACTGGACTAATAGGAATAACTTTTTAAAAAATGACTGTTCTGTATAGATAAAATATATTG
AACTCAAGTGCAAAAGCCATGAGATTAAAGGCATTGTCTTCTGGTCAATATGATGCACTGTAGC
GGAGCAGTTCCTCAGGACACAACTCTGCAGCCCTTCCTCCTGTGCCTCAAGTTGATGGCTGCCA
CTCCACAGGTCTTCCGTCTGTCTGCTCCTTTGAAAGCTGGGCTTCCAAAGCACTGTTGAACACT
GAGGGTCCTGTTGATATTAATGAGTTGTATTTTAAATATCAGAGATTATTAAATAAAGAGAATG
ATTTTCTATTAA

hide sequence

RefSeq Acc Id:

XM_006240486 ⟹ XP_006240548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,771 (-)	NCBI
mRatBN7.2	6	121,072,228 - 121,107,867 (-)	NCBI
Rnor_6.0	6	125,817,420 - 125,853,418 (-)	NCBI
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI

Sequence:

show sequence

GGGGGCGGAGCTGCTGGAGGGGGCTGCTCCGCGCCGGGGCCGTTGGCTCCAGACAAATAAACAT
GGAGTCCATCTTCCACGAGAAACAAGAAGGCTCCCTTTGCGCTCAGCATTGCTTGAATAACCTC
TTACAAGGAGAGTATTTTAGCCCCGTGGAGCTGTCCTCAATTGCACACCAGCTGGATGAAGAGG
AGAGGCTGCGGATGGCGGAAGGAGGGGTCACCAGCGAAGACTACCGCACATTTTTACAGCCTTC
TGGAAATATGGACGACAGCGGCTTTTTCTCTATTCAAAGTCCCTATTCTCTAGCATTTCCACCC
AGGACTTCGCTTGTTCACCTTGGGAGGCCCAGTGGGCCTGAGCTGAGAGCAGAGGTTATAAGCA
ATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTATTCAACAGTCCAGAGTACCAGAGGCTCAG
AATCGATCCTATAAATGAAAGATCCTTTATATGCAATTATAAAGAACACTGGTTTACAGTTAGA
AAATTAGGAAAACAGTGGTTTAACTTGAATTCTTTGTTGACTGGTCCAGAGCTAATATCAGATA
CATACCTCGCACTGTTCTTGGCTCAGTTACAGCAAGAAGGTTATTCTATATTTGTTGTTAAGGG
TGATCTGCCAGATTGTGAAGCTGACCAACTTTTACAGATGATCAAGGTCCAACAGATGCATCGA
CCAAAACTTATTGGAGAAGAACTCGCACATCTGAAAGAGCAGAGCGCCCTCAAAGCAGATCTGG
AGCGAGTCTTAGAGGCGGCTGACGGGCCGGGAATGTTTGATGATGATGAGGACGATTTACAGAG
GGCTCTGGCCATGAGTCGCCAGGAAATCGACATGGAGGACGAAGAAGCCGATCTCCGCAGGGCC
ATTCAGCTCAGTATGCAAGGTAGTTCCAGAGGTATGTGTGAAGATAGTCCGCAGACATCAAGCA
CAGATCTTTCTTCAGAAGAGCTGCGGAAGAGGAGAGAAGCCTACTTTGAAAAGCAACAGCATCA
GCAACAGGAAGCAGACCGACCTGGATACCTTTCATACCCATGTGAAAGACCCACCACAAGTTCA
GGAGGACTCCGGAGCAACCAAGCAGGCAATGCTATGAGTGAAGAGGACGTGCTTCGGGCAACTG
TGACTGTGTCTTTAGAAACTGCTAAAGACAGTTTGAAAGCAGAAAGAAAAAAATAGTCCCTTTA
AAAATCATTTTGCCACCATGCTTTGTAACATTGTTTGTGTGATCACAGTGTAAGGTCCACTTTG
GCAGCAGTGTGTTCACCGGAAGGCAGCAGACACTGCATGGTTTGTAAGCAGAAAGGGCAGAAGC
GTCCTAGGACTAAAGAACCACGAGATGCTAGCCAAAGAGGCAGTCAGCAATGAAAGAAACAACG
TAGTTTTCTAAATGTCCCTCCTTGTTTTTCAAATGTGCAATATCTGACTGAAATTATGGAATTT
TCCTTGGCTCTTTTGGACCAACTCGTTAGCTCTTGCCACAGAACTTGATCCTGTAGAGTTCCGT
CTTCTCTCTGCATTGGAGCTGGCTTGGCTTGTTTGGGCTTTTCTTCATTTCACACCAACCTTTT
GTGAAATATCGTTTGTATGTCTTGCTATGGAAAGATCAGTCTGTCTTTTCGTGTATGTGTCAGG
CACATGGATGCTTCCTGGTGTTATTTTCTCTGGTTTTGGTTATTTTCCTGCAAGTCTAACATGG
TGATCTGTTGGTTTTAAAGCCTTTTTTAGTGGGATCATTATTTAACTCTGGTGCATTCCTCTAC
TCTAAAGTCAGCCCTGTTCTTCTAAACGAGCTGAGGTTTTTTGTGAGCACGTGCTTTCTCGATG
CCCTGCGAAGGATTTCAGCTGTGTCCTGGCTGACTTATTTCCTTTCTTTTCCAGTTGAGAAAGG
AGAGACAGAGGATACAAATATATTTCCTTCTACTTAACGTTCTCCATGAATGTACCACAGGAGA
ACCCGCCCTTCAGTGCTGGTGGTGGGTTCGTTCCAGTGTTTCTTCTGTGTCAAGAGCTTAGTGT
TCTGTATATGATTAAGTCCTGGAAAATAGGTGCCTGCTTCACTTTTTAATTTTTAAAAATAAAT
TTTTTTTTATTTTAGTAGAAAATAGGCTGCTAGGATGATGGTCTAGGATGTGAAAGTAATTTAC
TAATGAAAATATATTTAAATATACTGTGGTTGACCCTTGCTACCATGTTAAAATTGTTAAGAAT
TACAGAAGTCACAATACTTAAAGGATCTGTTTGTAAATACGAAAGTCCTTAGTTTTGATAAACA
TTAAGTGAGATGCACATCTGGTCTTGCTGGGTCAATGCTTTGGTATGATTTGGGTGGAAATTAA
CTATGTGTGTTTGTCCTGGGTGTCATAGATCCTGATACTGTTTTCCCCTCCCTACCCTTTTTGA
AGCCCCTTTGAATGTTAACTTGTACATAGGTAAAATCAAGAAGAAATTTTAGCCAACAGCTTAG
TAAGGTGAAGCATGGTATATTGCTCTACTGATGTGTGTTCTGCACACGTTTTTATCAGGGAAAG
TTTTTGATGTAGGATTTATTGCTATCTAACTGAAAATGATACAAATATTTTTATTTATGATTAT
GAAATAGCTTTCTCTTGGATAGGATGGATTGTTTTGTTTGGCTGTGCTAGGGATTGAACCCAGA
GCCTCGTGTGTGCTAGGTAAGCGCTCTACCTCTGAGCTAGATCCCCAGATCCAAAACATGTGTT
TCTCTTTTGTTTGTTTTTTTTCTTAGCCATTTTGTGCCAATTACAGTTTCTCTTTTTGAAATTT
GCCTCATGAAAAATTAGACAGTCCTATTTTCAAATCTATGAAGTTTTCTTTTAGTAATTGCAAA
GGTTCAGAATTATGCAGCTGTAGGCTGTTGGGTTAGGCCTTTGCTTACAGTGGATTTTTACACT
GAAGTATGCAGCTACCCCAAGTGTGCTGGTCACATGTCGAGCATTGACCCTTTCCTTTACCCTT
TGAAAAACCACATTACACTTTCCGCACACTCAGATTGATGTGCTGCCTGACAGCCATTTCAGTT
TTAACTTCAGAGTTTATAAAACGTTCATGTAACACACCCTACGTAAATCATGTATGAAATACAG
CATGTTGATCTTTTATTAGAAATGTTTTAAAGAGAAACTGAGTGTACACTGAATATATTTGAGT
GCATTTTTTAAGTTTGTTATAAATTGTGGTATTTGTCCAGGCAAATCCAAAATCACCATTGAAC
TGCCATCCCTTCTATTGACCTAGGCTTACCTAAACATTTAGATTCATTATTAATGAGTAGGCAG
CATGAAAAGATGCCAATGCTTATTATAACCACAGTATCCAAAGTGTAAGAGTTGTATGACATTC
ACGTCCGTACACAGGAGCTGCTGTTTACAGTACTGCAGGATAGATGGGCCAGGGACTCCGCTGT
CATGGTCCTGTTATGGACTTAACTGACATTTCCATTCTGTTTTTACCAATTGGAATACTTTAAT
GTTTAATATTTAAACTACTGATACCATTTTTCTAATGTGTAACTTATACTACCAAATAAAATAT
GTACAGCCAGAATGCTAGTGTTAGAACCAAGAGTAGGAACCCTCTGGAGACCAGGCATGGTGCT
ACATGCCTTCAATCCCCGTGCCTGGGAGTCAGAGGCAGGCAGATTGCTTTTTGAGTTCAAAGCC
AGTCTAGTCTACAGAGTAAGTTCCAAACTTGCTGCAGCTGCATAGTAGGACTCTGTCTTTAAAA
CAAAACAAAACACAACACAACACAACACAACAAAAACCTTTGGGACATTTCATTGATTAGATGG
TTTGATACAGTCAGTGCAGGTGAACTCCACGGTGAAGTTTTAAATGTTGGCCAAATAATTTACA
CTTCACAGACTATCTGAGGCGGTGCTTTTTTTTTTTTCCTGAAAACTTGATTTTTCTTGATGAA
GCCAAAGTTAATGAGGATGAATTCTCAAAAGGAGTAGTCTGCATTGCTTTATTTAATATCAGGT
TGAGTAAAATAAGTTTTATTCATGTCAGAGTCTAAGCCACAGATTTTGAATACCTGAATGTTTG
GTACTATTTAAATCATGCCAGTGCCAAGAATTACTAAGTTCTTAGAACTGGCCCCTGTGCCATG
CCTGAGTCCAGATTGGGCAGTGCAGAACCCAGATGTGCTATCCGAGAGTCTGAAGCTGGGGAGT
CTGATGTTTTAGTCAGGAAGAGGCTTCAGTTAATACCGAAACCTCCAGAGACAGGTTATTGTCA
GGCAGTGCCATGTGCTCAGTGGTAGAGCAGCCACCTAGAGGCCCAGGCCTTGTGCTCAGTCCCT
AACACTGCAAAAGAAGAACAGGGGCTCACAGTGAATCCACGTTCAGAGAGGCCTTACAGGGAGT
ATTTTCCAAGGGAGTTGTTTGTTGTAGTTTAGTCCTAACAAGTGTAGAGCTGTAATAGGTGACC
TTAAGAAAAACCAGGTGGCATCAGCTAATCAGTACAGAGTTTTTTGGTTTTCATATTTAGAAAC
TCTCCCTTTATTCCTAATTCGTTTATAATTAAAGACAAGAATTGGTTTTGTATTTTTCAAAGTT
TTATGCATAATAAAATGTTTTGTTGTAGTCTTTCAGGAATGAAAAGGATATTGACTTTTTTTTT
AAAATTTGAGGTGTGTGTGTGTGTGTGTGTGTGCGCACATGTGTGTGTGTGCAAGCACCTAAAA
TGGGTCTGTCATTTTAAGAATTAGCACAAAAAATATAGTCCCTGTTATGGAGGTTTAATAATAC
CAGTACACATTGTAAGTGCAGTCCTAGGTGAGGCACTAGTGAGAAGTGTGTGGAAAATGCAGTT
ACCTAGGTAGGACTCACTTGTCTCTTAAGTAGTTTAAAGGTAGTATGTTTCCTGGAATTTTTTA
ATGTTTTTTTTTCTTTTTTTTGAGGAAGATAGACATTTGAAATGTGATTATCTAATTTCTATAA
CACTGGACTAATAGGAATAACTTTTTAAAAAATGACTGTTCTGTATAGATAAAATATATTGAAC
TCAAGTGCAAAAGCCATGAGATTAAAGGCATTGTCTTCTGGTCAATATGATGCACTGTAGCGGA
GCAGTTCCTCAGGACACAACTCTGCAGCCCTTCCTCCTGTGCCTCAAGTTGATGGCTGCCACTC
CACAGGTCTTCCGTCTGTCTGCTCCTTTGAAAGCTGGGCTTCCAAAGCACTGTTGAACACTGAG
GGTCCTGTTGATATTAATGAGTTGTATTTTAAATATCAGAGATTATTAAATAAAGAGAATGATT
TTCTATTAA

hide sequence

RefSeq Acc Id:

XM_006240487 ⟹ XP_006240549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,771 (-)	NCBI
mRatBN7.2	6	121,072,228 - 121,107,867 (-)	NCBI
Rnor_6.0	6	125,817,420 - 125,853,418 (-)	NCBI
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI

Sequence:

show sequence

GGGGGCGGAGCTGCTGGAGGGGGCTGCTCCGCGCCGGGGCCGTTGGCTCCAGACAAATAAACAT
GGAGTCCATCTTCCACGAGAAACAAGAAGGCTCCCTTTGCGCTCAGCATTGCTTGAATAACCTC
TTACAAGGAGAGTATTTTAGCCCCGTGGAGCTGTCCTCAATTGCACACCAGCTGGATGAAGAGG
AGAGGCTGCGGATGGCGGAAGGAGGGGTCACCAGCGAAGACTACCGCACATTTTTACAGCAGCC
TTCTGGAAATATGGACGACAGCGGCTTTTTCTCTATTCAAAGTCCCTATTCTCTAGCATTTCCA
CCCAGGACTTCGCTTGTTCACCTTGGGAGGCCCAGTGGGCCTGAGCTGAGAGCAGAGGTTATAA
GCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTATTCAACAGTCCAGAGTACCAGAGGCT
CAGAATCGATCCTATAAATGAAAGATCCTTTATATGCAATTATAAAGAACACTGGTTTACAGTT
AGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTTTGTTGACTGGTCCAGAGCTAATATCAG
ATACATACCTCGCACTGTTCTTGGCTCAGTTACAGCAAGAAGGTTATTCTATATTTGTTGTTAA
GGGTGATCTGCCAGATTGTGAAGCTGACCAACTTTTACAGATGATCAAGGTCCAACAGATGCAT
CGACCAAAACTTATTGGAGAAGAACTCGCACATCTGAAAGAGCAGAGCGCCCTCAAAGCAGATC
TGGAGCGAGTCTTAGAGGCGGCTGACGGGCCGGGAATGTTTGATGATGATGAGGACGATTTACA
GAGGGCTCTGGCCATGAGTCGCCAGGAAATCGACATGGAGGACGAAGAAGCCGATCTCCGCAGG
GCCATTCAGCTCAGTATGCAAGGTAGTTCCAGAGGTATGTGTGAAGATAGTCCGCAGACATCAA
GCACAGATCTTTCTTCAGAAGAGCTGCGGAAGAGGAGAGAAGCCTACTTTGAAAAGCAACAGCA
TCAGCAACAGGAAGCAGACCGACCTGGATACCTTTCATACCCATGTGAAAGACCCACCACAAGT
TCAGGAGGACTCCGGAGCAACCAAGGCAATGCTATGAGTGAAGAGGACGTGCTTCGGGCAACTG
TGACTGTGTCTTTAGAAACTGCTAAAGACAGTTTGAAAGCAGAAAGAAAAAAATAGTCCCTTTA
AAAATCATTTTGCCACCATGCTTTGTAACATTGTTTGTGTGATCACAGTGTAAGGTCCACTTTG
GCAGCAGTGTGTTCACCGGAAGGCAGCAGACACTGCATGGTTTGTAAGCAGAAAGGGCAGAAGC
GTCCTAGGACTAAAGAACCACGAGATGCTAGCCAAAGAGGCAGTCAGCAATGAAAGAAACAACG
TAGTTTTCTAAATGTCCCTCCTTGTTTTTCAAATGTGCAATATCTGACTGAAATTATGGAATTT
TCCTTGGCTCTTTTGGACCAACTCGTTAGCTCTTGCCACAGAACTTGATCCTGTAGAGTTCCGT
CTTCTCTCTGCATTGGAGCTGGCTTGGCTTGTTTGGGCTTTTCTTCATTTCACACCAACCTTTT
GTGAAATATCGTTTGTATGTCTTGCTATGGAAAGATCAGTCTGTCTTTTCGTGTATGTGTCAGG
CACATGGATGCTTCCTGGTGTTATTTTCTCTGGTTTTGGTTATTTTCCTGCAAGTCTAACATGG
TGATCTGTTGGTTTTAAAGCCTTTTTTAGTGGGATCATTATTTAACTCTGGTGCATTCCTCTAC
TCTAAAGTCAGCCCTGTTCTTCTAAACGAGCTGAGGTTTTTTGTGAGCACGTGCTTTCTCGATG
CCCTGCGAAGGATTTCAGCTGTGTCCTGGCTGACTTATTTCCTTTCTTTTCCAGTTGAGAAAGG
AGAGACAGAGGATACAAATATATTTCCTTCTACTTAACGTTCTCCATGAATGTACCACAGGAGA
ACCCGCCCTTCAGTGCTGGTGGTGGGTTCGTTCCAGTGTTTCTTCTGTGTCAAGAGCTTAGTGT
TCTGTATATGATTAAGTCCTGGAAAATAGGTGCCTGCTTCACTTTTTAATTTTTAAAAATAAAT
TTTTTTTTATTTTAGTAGAAAATAGGCTGCTAGGATGATGGTCTAGGATGTGAAAGTAATTTAC
TAATGAAAATATATTTAAATATACTGTGGTTGACCCTTGCTACCATGTTAAAATTGTTAAGAAT
TACAGAAGTCACAATACTTAAAGGATCTGTTTGTAAATACGAAAGTCCTTAGTTTTGATAAACA
TTAAGTGAGATGCACATCTGGTCTTGCTGGGTCAATGCTTTGGTATGATTTGGGTGGAAATTAA
CTATGTGTGTTTGTCCTGGGTGTCATAGATCCTGATACTGTTTTCCCCTCCCTACCCTTTTTGA
AGCCCCTTTGAATGTTAACTTGTACATAGGTAAAATCAAGAAGAAATTTTAGCCAACAGCTTAG
TAAGGTGAAGCATGGTATATTGCTCTACTGATGTGTGTTCTGCACACGTTTTTATCAGGGAAAG
TTTTTGATGTAGGATTTATTGCTATCTAACTGAAAATGATACAAATATTTTTATTTATGATTAT
GAAATAGCTTTCTCTTGGATAGGATGGATTGTTTTGTTTGGCTGTGCTAGGGATTGAACCCAGA
GCCTCGTGTGTGCTAGGTAAGCGCTCTACCTCTGAGCTAGATCCCCAGATCCAAAACATGTGTT
TCTCTTTTGTTTGTTTTTTTTCTTAGCCATTTTGTGCCAATTACAGTTTCTCTTTTTGAAATTT
GCCTCATGAAAAATTAGACAGTCCTATTTTCAAATCTATGAAGTTTTCTTTTAGTAATTGCAAA
GGTTCAGAATTATGCAGCTGTAGGCTGTTGGGTTAGGCCTTTGCTTACAGTGGATTTTTACACT
GAAGTATGCAGCTACCCCAAGTGTGCTGGTCACATGTCGAGCATTGACCCTTTCCTTTACCCTT
TGAAAAACCACATTACACTTTCCGCACACTCAGATTGATGTGCTGCCTGACAGCCATTTCAGTT
TTAACTTCAGAGTTTATAAAACGTTCATGTAACACACCCTACGTAAATCATGTATGAAATACAG
CATGTTGATCTTTTATTAGAAATGTTTTAAAGAGAAACTGAGTGTACACTGAATATATTTGAGT
GCATTTTTTAAGTTTGTTATAAATTGTGGTATTTGTCCAGGCAAATCCAAAATCACCATTGAAC
TGCCATCCCTTCTATTGACCTAGGCTTACCTAAACATTTAGATTCATTATTAATGAGTAGGCAG
CATGAAAAGATGCCAATGCTTATTATAACCACAGTATCCAAAGTGTAAGAGTTGTATGACATTC
ACGTCCGTACACAGGAGCTGCTGTTTACAGTACTGCAGGATAGATGGGCCAGGGACTCCGCTGT
CATGGTCCTGTTATGGACTTAACTGACATTTCCATTCTGTTTTTACCAATTGGAATACTTTAAT
GTTTAATATTTAAACTACTGATACCATTTTTCTAATGTGTAACTTATACTACCAAATAAAATAT
GTACAGCCAGAATGCTAGTGTTAGAACCAAGAGTAGGAACCCTCTGGAGACCAGGCATGGTGCT
ACATGCCTTCAATCCCCGTGCCTGGGAGTCAGAGGCAGGCAGATTGCTTTTTGAGTTCAAAGCC
AGTCTAGTCTACAGAGTAAGTTCCAAACTTGCTGCAGCTGCATAGTAGGACTCTGTCTTTAAAA
CAAAACAAAACACAACACAACACAACACAACAAAAACCTTTGGGACATTTCATTGATTAGATGG
TTTGATACAGTCAGTGCAGGTGAACTCCACGGTGAAGTTTTAAATGTTGGCCAAATAATTTACA
CTTCACAGACTATCTGAGGCGGTGCTTTTTTTTTTTTCCTGAAAACTTGATTTTTCTTGATGAA
GCCAAAGTTAATGAGGATGAATTCTCAAAAGGAGTAGTCTGCATTGCTTTATTTAATATCAGGT
TGAGTAAAATAAGTTTTATTCATGTCAGAGTCTAAGCCACAGATTTTGAATACCTGAATGTTTG
GTACTATTTAAATCATGCCAGTGCCAAGAATTACTAAGTTCTTAGAACTGGCCCCTGTGCCATG
CCTGAGTCCAGATTGGGCAGTGCAGAACCCAGATGTGCTATCCGAGAGTCTGAAGCTGGGGAGT
CTGATGTTTTAGTCAGGAAGAGGCTTCAGTTAATACCGAAACCTCCAGAGACAGGTTATTGTCA
GGCAGTGCCATGTGCTCAGTGGTAGAGCAGCCACCTAGAGGCCCAGGCCTTGTGCTCAGTCCCT
AACACTGCAAAAGAAGAACAGGGGCTCACAGTGAATCCACGTTCAGAGAGGCCTTACAGGGAGT
ATTTTCCAAGGGAGTTGTTTGTTGTAGTTTAGTCCTAACAAGTGTAGAGCTGTAATAGGTGACC
TTAAGAAAAACCAGGTGGCATCAGCTAATCAGTACAGAGTTTTTTGGTTTTCATATTTAGAAAC
TCTCCCTTTATTCCTAATTCGTTTATAATTAAAGACAAGAATTGGTTTTGTATTTTTCAAAGTT
TTATGCATAATAAAATGTTTTGTTGTAGTCTTTCAGGAATGAAAAGGATATTGACTTTTTTTTT
AAAATTTGAGGTGTGTGTGTGTGTGTGTGTGTGCGCACATGTGTGTGTGTGCAAGCACCTAAAA
TGGGTCTGTCATTTTAAGAATTAGCACAAAAAATATAGTCCCTGTTATGGAGGTTTAATAATAC
CAGTACACATTGTAAGTGCAGTCCTAGGTGAGGCACTAGTGAGAAGTGTGTGGAAAATGCAGTT
ACCTAGGTAGGACTCACTTGTCTCTTAAGTAGTTTAAAGGTAGTATGTTTCCTGGAATTTTTTA
ATGTTTTTTTTTCTTTTTTTTGAGGAAGATAGACATTTGAAATGTGATTATCTAATTTCTATAA
CACTGGACTAATAGGAATAACTTTTTAAAAAATGACTGTTCTGTATAGATAAAATATATTGAAC
TCAAGTGCAAAAGCCATGAGATTAAAGGCATTGTCTTCTGGTCAATATGATGCACTGTAGCGGA
GCAGTTCCTCAGGACACAACTCTGCAGCCCTTCCTCCTGTGCCTCAAGTTGATGGCTGCCACTC
CACAGGTCTTCCGTCTGTCTGCTCCTTTGAAAGCTGGGCTTCCAAAGCACTGTTGAACACTGAG
GGTCCTGTTGATATTAATGAGTTGTATTTTAAATATCAGAGATTATTAAATAAAGAGAATGATT
TTCTATTAA

hide sequence

RefSeq Acc Id:

XM_006240488 ⟹ XP_006240550

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,904 (-)	NCBI
mRatBN7.2	6	121,072,228 - 121,107,867 (-)	NCBI
Rnor_6.0	6	125,817,420 - 125,853,418 (-)	NCBI
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI

Sequence:

show sequence

GGGGGCGGAGCTGCTGGAGGGGGCTGCTCCGCGCCGGGGCCGTTGGCTCCAGACAAATAAACAT
GGAGTCCATCTTCCACGAGAAACAAGAAGGCTCCCTTTGCGCTCAGCATTGCTTGAATAACCTC
TTACAAGGAGAGTATTTTAGCCCCGTGGAGCTGTCCTCAATTGCACACCAGCTGGATGAAGAGG
AGAGGCTGCGGATGGCGGAAGGAGGGGTCACCAGCGAAGACTACCGCACATTTTTACAGCCTTC
TGGAAATATGGACGACAGCGGCTTTTTCTCTATTCAAGTTATAAGCAATGCCTTGAAAGTTTGG
GGTTTAGAACTAATCCTATTCAACAGTCCAGAGTACCAGAGGCTCAGAATCGATCCTATAAATG
AAAGATCCTTTATATGCAATTATAAAGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTG
GTTTAACTTGAATTCTTTGTTGACTGGTCCAGAGCTAATATCAGATACATACCTCGCACTGTTC
TTGGCTCAGTTACAGCAAGAAGGTTATTCTATATTTGTTGTTAAGGGTGATCTGCCAGATTGTG
AAGCTGACCAACTTTTACAGATGATCAAGGTCCAACAGATGCATCGACCAAAACTTATTGGAGA
AGAACTCGCACATCTGAAAGAGCAGAGCGCCCTCAAAGCAGATCTGGAGCGAGTCTTAGAGGCG
GCTGACGGGCCGGGAATGTTTGATGATGATGAGGACGATTTACAGAGGGCTCTGGCCATGAGTC
GCCAGGAAATCGACATGGAGGACGAAGAAGCCGATCTCCGCAGGGCCATTCAGCTCAGTATGCA
AGGTAGTTCCAGAGGTATGTGTGAAGATAGTCCGCAGACATCAAGCACAGATCTTTCTTCAGAA
GAGCTGCGGAAGAGGAGAGAAGCCTACTTTGAAAAGCAACAGCATCAGCAACAGGAAGCAGACC
GACCTGGATACCTTTCATACCCATGTGAAAGACCCACCACAAGTTCAGGAGGACTCCGGAGCAA
CCAAGCAGGCAATGCTATGAGTGAAGAGGACGTGCTTCGGGCAACTGTGACTGTGTCTTTAGAA
ACTGCTAAAGACAGTTTGAAAGCAGAAAGAAAAAAATAGTCCCTTTAAAAATCATTTTGCCACC
ATGCTTTGTAACATTGTTTGTGTGATCACAGTGTAAGGTCCACTTTGGCAGCAGTGTGTTCACC
GGAAGGCAGCAGACACTGCATGGTTTGTAAGCAGAAAGGGCAGAAGCGTCCTAGGACTAAAGAA
CCACGAGATGCTAGCCAAAGAGGCAGTCAGCAATGAAAGAAACAACGTAGTTTTCTAAATGTCC
CTCCTTGTTTTTCAAATGTGCAATATCTGACTGAAATTATGGAATTTTCCTTGGCTCTTTTGGA
CCAACTCGTTAGCTCTTGCCACAGAACTTGATCCTGTAGAGTTCCGTCTTCTCTCTGCATTGGA
GCTGGCTTGGCTTGTTTGGGCTTTTCTTCATTTCACACCAACCTTTTGTGAAATATCGTTTGTA
TGTCTTGCTATGGAAAGATCAGTCTGTCTTTTCGTGTATGTGTCAGGCACATGGATGCTTCCTG
GTGTTATTTTCTCTGGTTTTGGTTATTTTCCTGCAAGTCTAACATGGTGATCTGTTGGTTTTAA
AGCCTTTTTTAGTGGGATCATTATTTAACTCTGGTGCATTCCTCTACTCTAAAGTCAGCCCTGT
TCTTCTAAACGAGCTGAGGTTTTTTGTGAGCACGTGCTTTCTCGATGCCCTGCGAAGGATTTCA
GCTGTGTCCTGGCTGACTTATTTCCTTTCTTTTCCAGTTGAGAAAGGAGAGACAGAGGATACAA
ATATATTTCCTTCTACTTAACGTTCTCCATGAATGTACCACAGGAGAACCCGCCCTTCAGTGCT
GGTGGTGGGTTCGTTCCAGTGTTTCTTCTGTGTCAAGAGCTTAGTGTTCTGTATATGATTAAGT
CCTGGAAAATAGGTGCCTGCTTCACTTTTTAATTTTTAAAAATAAATTTTTTTTTATTTTAGTA
GAAAATAGGCTGCTAGGATGATGGTCTAGGATGTGAAAGTAATTTACTAATGAAAATATATTTA
AATATACTGTGGTTGACCCTTGCTACCATGTTAAAATTGTTAAGAATTACAGAAGTCACAATAC
TTAAAGGATCTGTTTGTAAATACGAAAGTCCTTAGTTTTGATAAACATTAAGTGAGATGCACAT
CTGGTCTTGCTGGGTCAATGCTTTGGTATGATTTGGGTGGAAATTAACTATGTGTGTTTGTCCT
GGGTGTCATAGATCCTGATACTGTTTTCCCCTCCCTACCCTTTTTGAAGCCCCTTTGAATGTTA
ACTTGTACATAGGTAAAATCAAGAAGAAATTTTAGCCAACAGCTTAGTAAGGTGAAGCATGGTA
TATTGCTCTACTGATGTGTGTTCTGCACACGTTTTTATCAGGGAAAGTTTTTGATGTAGGATTT
ATTGCTATCTAACTGAAAATGATACAAATATTTTTATTTATGATTATGAAATAGCTTTCTCTTG
GATAGGATGGATTGTTTTGTTTGGCTGTGCTAGGGATTGAACCCAGAGCCTCGTGTGTGCTAGG
TAAGCGCTCTACCTCTGAGCTAGATCCCCAGATCCAAAACATGTGTTTCTCTTTTGTTTGTTTT
TTTTCTTAGCCATTTTGTGCCAATTACAGTTTCTCTTTTTGAAATTTGCCTCATGAAAAATTAG
ACAGTCCTATTTTCAAATCTATGAAGTTTTCTTTTAGTAATTGCAAAGGTTCAGAATTATGCAG
CTGTAGGCTGTTGGGTTAGGCCTTTGCTTACAGTGGATTTTTACACTGAAGTATGCAGCTACCC
CAAGTGTGCTGGTCACATGTCGAGCATTGACCCTTTCCTTTACCCTTTGAAAAACCACATTACA
CTTTCCGCACACTCAGATTGATGTGCTGCCTGACAGCCATTTCAGTTTTAACTTCAGAGTTTAT
AAAACGTTCATGTAACACACCCTACGTAAATCATGTATGAAATACAGCATGTTGATCTTTTATT
AGAAATGTTTTAAAGAGAAACTGAGTGTACACTGAATATATTTGAGTGCATTTTTTAAGTTTGT
TATAAATTGTGGTATTTGTCCAGGCAAATCCAAAATCACCATTGAACTGCCATCCCTTCTATTG
ACCTAGGCTTACCTAAACATTTAGATTCATTATTAATGAGTAGGCAGCATGAAAAGATGCCAAT
GCTTATTATAACCACAGTATCCAAAGTGTAAGAGTTGTATGACATTCACGTCCGTACACAGGAG
CTGCTGTTTACAGTACTGCAGGATAGATGGGCCAGGGACTCCGCTGTCATGGTCCTGTTATGGA
CTTAACTGACATTTCCATTCTGTTTTTACCAATTGGAATACTTTAATGTTTAATATTTAAACTA
CTGATACCATTTTTCTAATGTGTAACTTATACTACCAAATAAAATATGTACAGCCAGAATGCTA
GTGTTAGAACCAAGAGTAGGAACCCTCTGGAGACCAGGCATGGTGCTACATGCCTTCAATCCCC
GTGCCTGGGAGTCAGAGGCAGGCAGATTGCTTTTTGAGTTCAAAGCCAGTCTAGTCTACAGAGT
AAGTTCCAAACTTGCTGCAGCTGCATAGTAGGACTCTGTCTTTAAAACAAAACAAAACACAACA
CAACACAACACAACAAAAACCTTTGGGACATTTCATTGATTAGATGGTTTGATACAGTCAGTGC
AGGTGAACTCCACGGTGAAGTTTTAAATGTTGGCCAAATAATTTACACTTCACAGACTATCTGA
GGCGGTGCTTTTTTTTTTTTCCTGAAAACTTGATTTTTCTTGATGAAGCCAAAGTTAATGAGGA
TGAATTCTCAAAAGGAGTAGTCTGCATTGCTTTATTTAATATCAGGTTGAGTAAAATAAGTTTT
ATTCATGTCAGAGTCTAAGCCACAGATTTTGAATACCTGAATGTTTGGTACTATTTAAATCATG
CCAGTGCCAAGAATTACTAAGTTCTTAGAACTGGCCCCTGTGCCATGCCTGAGTCCAGATTGGG
CAGTGCAGAACCCAGATGTGCTATCCGAGAGTCTGAAGCTGGGGAGTCTGATGTTTTAGTCAGG
AAGAGGCTTCAGTTAATACCGAAACCTCCAGAGACAGGTTATTGTCAGGCAGTGCCATGTGCTC
AGTGGTAGAGCAGCCACCTAGAGGCCCAGGCCTTGTGCTCAGTCCCTAACACTGCAAAAGAAGA
ACAGGGGCTCACAGTGAATCCACGTTCAGAGAGGCCTTACAGGGAGTATTTTCCAAGGGAGTTG
TTTGTTGTAGTTTAGTCCTAACAAGTGTAGAGCTGTAATAGGTGACCTTAAGAAAAACCAGGTG
GCATCAGCTAATCAGTACAGAGTTTTTTGGTTTTCATATTTAGAAACTCTCCCTTTATTCCTAA
TTCGTTTATAATTAAAGACAAGAATTGGTTTTGTATTTTTCAAAGTTTTATGCATAATAAAATG
TTTTGTTGTAGTCTTTCAGGAATGAAAAGGATATTGACTTTTTTTTTAAAATTTGAGGTGTGTG
TGTGTGTGTGTGTGTGCGCACATGTGTGTGTGTGCAAGCACCTAAAATGGGTCTGTCATTTTAA
GAATTAGCACAAAAAATATAGTCCCTGTTATGGAGGTTTAATAATACCAGTACACATTGTAAGT
GCAGTCCTAGGTGAGGCACTAGTGAGAAGTGTGTGGAAAATGCAGTTACCTAGGTAGGACTCAC
TTGTCTCTTAAGTAGTTTAAAGGTAGTATGTTTCCTGGAATTTTTTAATGTTTTTTTTTCTTTT
TTTTGAGGAAGATAGACATTTGAAATGTGATTATCTAATTTCTATAACACTGGACTAATAGGAA
TAACTTTTTAAAAAATGACTGTTCTGTATAGATAAAATATATTGAACTCAAGTGCAAAAGCCAT
GAGATTAAAGGCATTGTCTTCTGGTCAATATGATGCACTGTAGCGGAGCAGTTCCTCAGGACAC
AACTCTGCAGCCCTTCCTCCTGTGCCTCAAGTTGATGGCTGCCACTCCACAGGTCTTCCGTCTG
TCTGCTCCTTTGAAAGCTGGGCTTCCAAAGCACTGTTGAACACTGAGGGTCCTGTTGATATTAA
TGAGTTGTATTTTAAATATCAGAGATTATTAAATAAAGAGAATGATTTTCTATTAA

hide sequence

RefSeq Acc Id:

XM_006240490 ⟹ XP_006240552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,676 (-)	NCBI
mRatBN7.2	6	121,072,228 - 121,107,791 (-)	NCBI
Rnor_6.0	6	125,817,420 - 125,853,326 (-)	NCBI
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI

Sequence:

show sequence

GTGGGCGTTCGGTGGGGAGCCGTCCGCGGCTCGGCGGCGGGCGTGGGGAGCAGCGTCGCCGCTT
CAGGAACTCAGGCGGGGCCCGAGCGCCCCCATCCCGACTTGGCTGGCAAGAAGGCTCCCTTTGC
GCTCAGCATTGCTTGAATAACCTCTTACAAGGAGAGTATTTTAGCCCCGTGGAGCTGTCCTCAA
TTGCACACCAGCTGGATGAAGAGGAGAGGCTGCGGATGGCGGAAGGAGGGGTCACCAGCGAAGA
CTACCGCACATTTTTACAGCAGCCTTCTGGAAATATGGACGACAGCGGCTTTTTCTCTATTCAA
AGTCCCTATTCTCTAGCATTTCCACCCAGGACTTCGCTTGTTCACCTTGGGAGGCCCAGTGGGC
CTGAGCTGAGAGCAGAGGTTATAAGCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTATT
CAACAGTCCAGAGTACCAGAGGCTCAGAATCGATCCTATAAATGAAAGATCCTTTATATGCAAT
TATAAAGAACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTTTGT
TGACTGGTCCAGAGCTAATATCAGATACATACCTCGCACTGTTCTTGGCTCAGTTACAGCAAGA
AGGTTATTCTATATTTGTTGTTAAGGGTGATCTGCCAGATTGTGAAGCTGACCAACTTTTACAG
ATGATCAAGGTCCAACAGATGCATCGACCAAAACTTATTGGAGAAGAACTCGCACATCTGAAAG
AGCAGAGCGCCCTCAAAGCAGATCTGGAGCGAGTCTTAGAGGCGGCTGACGGGCCGGGAATGTT
TGATGATGATGAGGACGATTTACAGAGGGCTCTGGCCATGAGTCGCCAGGAAATCGACATGGAG
GACGAAGAAGCCGATCTCCGCAGGGCCATTCAGCTCAGTATGCAAGGTAGTTCCAGAGGTATGT
GTGAAGATAGTCCGCAGACATCAAGCACAGATCTTTCTTCAGAAGAGCTGCGGAAGAGGAGAGA
AGCCTACTTTGAAAAGCAACAGCATCAGCAACAGGAAGCAGACCGACCTGGATACCTTTCATAC
CCATGTGAAAGACCCACCACAAGTTCAGGAGGACTCCGGAGCAACCAAGCAGGCAATGCTATGA
GTGAAGAGGACGTGCTTCGGGCAACTGTGACTGTGTCTTTAGAAACTGCTAAAGACAGTTTGAA
AGCAGAAAGAAAAAAATAGTCCCTTTAAAAATCATTTTGCCACCATGCTTTGTAACATTGTTTG
TGTGATCACAGTGTAAGGTCCACTTTGGCAGCAGTGTGTTCACCGGAAGGCAGCAGACACTGCA
TGGTTTGTAAGCAGAAAGGGCAGAAGCGTCCTAGGACTAAAGAACCACGAGATGCTAGCCAAAG
AGGCAGTCAGCAATGAAAGAAACAACGTAGTTTTCTAAATGTCCCTCCTTGTTTTTCAAATGTG
CAATATCTGACTGAAATTATGGAATTTTCCTTGGCTCTTTTGGACCAACTCGTTAGCTCTTGCC
ACAGAACTTGATCCTGTAGAGTTCCGTCTTCTCTCTGCATTGGAGCTGGCTTGGCTTGTTTGGG
CTTTTCTTCATTTCACACCAACCTTTTGTGAAATATCGTTTGTATGTCTTGCTATGGAAAGATC
AGTCTGTCTTTTCGTGTATGTGTCAGGCACATGGATGCTTCCTGGTGTTATTTTCTCTGGTTTT
GGTTATTTTCCTGCAAGTCTAACATGGTGATCTGTTGGTTTTAAAGCCTTTTTTAGTGGGATCA
TTATTTAACTCTGGTGCATTCCTCTACTCTAAAGTCAGCCCTGTTCTTCTAAACGAGCTGAGGT
TTTTTGTGAGCACGTGCTTTCTCGATGCCCTGCGAAGGATTTCAGCTGTGTCCTGGCTGACTTA
TTTCCTTTCTTTTCCAGTTGAGAAAGGAGAGACAGAGGATACAAATATATTTCCTTCTACTTAA
CGTTCTCCATGAATGTACCACAGGAGAACCCGCCCTTCAGTGCTGGTGGTGGGTTCGTTCCAGT
GTTTCTTCTGTGTCAAGAGCTTAGTGTTCTGTATATGATTAAGTCCTGGAAAATAGGTGCCTGC
TTCACTTTTTAATTTTTAAAAATAAATTTTTTTTTATTTTAGTAGAAAATAGGCTGCTAGGATG
ATGGTCTAGGATGTGAAAGTAATTTACTAATGAAAATATATTTAAATATACTGTGGTTGACCCT
TGCTACCATGTTAAAATTGTTAAGAATTACAGAAGTCACAATACTTAAAGGATCTGTTTGTAAA
TACGAAAGTCCTTAGTTTTGATAAACATTAAGTGAGATGCACATCTGGTCTTGCTGGGTCAATG
CTTTGGTATGATTTGGGTGGAAATTAACTATGTGTGTTTGTCCTGGGTGTCATAGATCCTGATA
CTGTTTTCCCCTCCCTACCCTTTTTGAAGCCCCTTTGAATGTTAACTTGTACATAGGTAAAATC
AAGAAGAAATTTTAGCCAACAGCTTAGTAAGGTGAAGCATGGTATATTGCTCTACTGATGTGTG
TTCTGCACACGTTTTTATCAGGGAAAGTTTTTGATGTAGGATTTATTGCTATCTAACTGAAAAT
GATACAAATATTTTTATTTATGATTATGAAATAGCTTTCTCTTGGATAGGATGGATTGTTTTGT
TTGGCTGTGCTAGGGATTGAACCCAGAGCCTCGTGTGTGCTAGGTAAGCGCTCTACCTCTGAGC
TAGATCCCCAGATCCAAAACATGTGTTTCTCTTTTGTTTGTTTTTTTTCTTAGCCATTTTGTGC
CAATTACAGTTTCTCTTTTTGAAATTTGCCTCATGAAAAATTAGACAGTCCTATTTTCAAATCT
ATGAAGTTTTCTTTTAGTAATTGCAAAGGTTCAGAATTATGCAGCTGTAGGCTGTTGGGTTAGG
CCTTTGCTTACAGTGGATTTTTACACTGAAGTATGCAGCTACCCCAAGTGTGCTGGTCACATGT
CGAGCATTGACCCTTTCCTTTACCCTTTGAAAAACCACATTACACTTTCCGCACACTCAGATTG
ATGTGCTGCCTGACAGCCATTTCAGTTTTAACTTCAGAGTTTATAAAACGTTCATGTAACACAC
CCTACGTAAATCATGTATGAAATACAGCATGTTGATCTTTTATTAGAAATGTTTTAAAGAGAAA
CTGAGTGTACACTGAATATATTTGAGTGCATTTTTTAAGTTTGTTATAAATTGTGGTATTTGTC
CAGGCAAATCCAAAATCACCATTGAACTGCCATCCCTTCTATTGACCTAGGCTTACCTAAACAT
TTAGATTCATTATTAATGAGTAGGCAGCATGAAAAGATGCCAATGCTTATTATAACCACAGTAT
CCAAAGTGTAAGAGTTGTATGACATTCACGTCCGTACACAGGAGCTGCTGTTTACAGTACTGCA
GGATAGATGGGCCAGGGACTCCGCTGTCATGGTCCTGTTATGGACTTAACTGACATTTCCATTC
TGTTTTTACCAATTGGAATACTTTAATGTTTAATATTTAAACTACTGATACCATTTTTCTAATG
TGTAACTTATACTACCAAATAAAATATGTACAGCCAGAATGCTAGTGTTAGAACCAAGAGTAGG
AACCCTCTGGAGACCAGGCATGGTGCTACATGCCTTCAATCCCCGTGCCTGGGAGTCAGAGGCA
GGCAGATTGCTTTTTGAGTTCAAAGCCAGTCTAGTCTACAGAGTAAGTTCCAAACTTGCTGCAG
CTGCATAGTAGGACTCTGTCTTTAAAACAAAACAAAACACAACACAACACAACACAACAAAAAC
CTTTGGGACATTTCATTGATTAGATGGTTTGATACAGTCAGTGCAGGTGAACTCCACGGTGAAG
TTTTAAATGTTGGCCAAATAATTTACACTTCACAGACTATCTGAGGCGGTGCTTTTTTTTTTTT
CCTGAAAACTTGATTTTTCTTGATGAAGCCAAAGTTAATGAGGATGAATTCTCAAAAGGAGTAG
TCTGCATTGCTTTATTTAATATCAGGTTGAGTAAAATAAGTTTTATTCATGTCAGAGTCTAAGC
CACAGATTTTGAATACCTGAATGTTTGGTACTATTTAAATCATGCCAGTGCCAAGAATTACTAA
GTTCTTAGAACTGGCCCCTGTGCCATGCCTGAGTCCAGATTGGGCAGTGCAGAACCCAGATGTG
CTATCCGAGAGTCTGAAGCTGGGGAGTCTGATGTTTTAGTCAGGAAGAGGCTTCAGTTAATACC
GAAACCTCCAGAGACAGGTTATTGTCAGGCAGTGCCATGTGCTCAGTGGTAGAGCAGCCACCTA
GAGGCCCAGGCCTTGTGCTCAGTCCCTAACACTGCAAAAGAAGAACAGGGGCTCACAGTGAATC
CACGTTCAGAGAGGCCTTACAGGGAGTATTTTCCAAGGGAGTTGTTTGTTGTAGTTTAGTCCTA
ACAAGTGTAGAGCTGTAATAGGTGACCTTAAGAAAAACCAGGTGGCATCAGCTAATCAGTACAG
AGTTTTTTGGTTTTCATATTTAGAAACTCTCCCTTTATTCCTAATTCGTTTATAATTAAAGACA
AGAATTGGTTTTGTATTTTTCAAAGTTTTATGCATAATAAAATGTTTTGTTGTAGTCTTTCAGG
AATGAAAAGGATATTGACTTTTTTTTTAAAATTTGAGGTGTGTGTGTGTGTGTGTGTGTGCGCA
CATGTGTGTGTGTGCAAGCACCTAAAATGGGTCTGTCATTTTAAGAATTAGCACAAAAAATATA
GTCCCTGTTATGGAGGTTTAATAATACCAGTACACATTGTAAGTGCAGTCCTAGGTGAGGCACT
AGTGAGAAGTGTGTGGAAAATGCAGTTACCTAGGTAGGACTCACTTGTCTCTTAAGTAGTTTAA
AGGTAGTATGTTTCCTGGAATTTTTTAATGTTTTTTTTTCTTTTTTTTGAGGAAGATAGACATT
TGAAATGTGATTATCTAATTTCTATAACACTGGACTAATAGGAATAACTTTTTAAAAAATGACT
GTTCTGTATAGATAAAATATATTGAACTCAAGTGCAAAAGCCATGAGATTAAAGGCATTGTCTT
CTGGTCAATATGATGCACTGTAGCGGAGCAGTTCCTCAGGACACAACTCTGCAGCCCTTCCTCC
TGTGCCTCAAGTTGATGGCTGCCACTCCACAGGTCTTCCGTCTGTCTGCTCCTTTGAAAGCTGG
GCTTCCAAAGCACTGTTGAACACTGAGGGTCCTGTTGATATTAATGAGTTGTATTTTAAATATC
AGAGATTATTAAATAAAGAGAATGATTTTCTATTAA

hide sequence

RefSeq Acc Id:

XM_006240493 ⟹ XP_006240555

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,792 (-)	NCBI
mRatBN7.2	6	121,072,228 - 121,107,867 (-)	NCBI
Rnor_6.0	6	125,817,420 - 125,853,418 (-)	NCBI
Rnor_5.0	6	135,029,278 - 135,065,455 (-)	NCBI

Sequence:

show sequence

GGGGGCGGAGCTGCTGGAGGGGGCTGCTCCGCGCCGGGGCCGTTGGCTCCAGACAAATAAACAT
GGAGTCCATCTTCCACGAGAAACAAGAAGGCTCCCTTTGCGCTCAGCATTGCTTGAATAACCTC
TTACAAGGAGAGTATTTTAGCCCCGTGGAGCTGTCCTCAATTGCACACCAGCTGGATGAAGAGG
AGAGGCTGCGGATGGCGGAAGGAGGGGTCACCAGCGAAGACTACCGCACATTTTTACAGCAGCC
TTCTGGAAATATGGACGACAGCGGCTTTTTCTCTATTCAAGTTATAAGCAATGCCTTGAAAGTT
TGGGGTTTAGAACTAATCCTATTCAACAGTCCAGAGTACCAGAGGCTCAGAATCGATCCTATAA
ATGAAAGATCCTTTATATGCAATTATAAAGAACACTGGTTTACAGTTAGAAAATTAGGAAAACA
GTGGTTTAACTTGAATTCTTTGTTGACTGGTCCAGAGCTAATATCAGATACATACCTCGCACTG
TTCTTGGCTCAGTTACAGCAAGAAGGTTATTCTATATTTGTTGTTAAGGGTGATCTGCCAGATT
GTGAAGCTGACCAACTTTTACAGATGATCAAGGTCCAACAGATGCATCGACCAAAACTTATTGG
AGAAGAACTCGCACATCTGAAAGAGCAGAGCGCCCTCAAAGCAGATCTGGAGCGAGTCTTAGAG
GCGGCTGACGGGCCGGGAATGTTTGATGATGATGAGGACGATTTACAGAGGGCTCTGGCCATGA
GTCGCCAGGAAATCGACATGGAGGACGAAGAAGCCGATCTCCGCAGGGCCATTCAGCTCAGTAT
GCAAGGTAGTTCCAGAGGTATGTGTGAAGATAGTCCGCAGACATCAAGCACAGATCTTTCTTCA
GAAGAGCTGCGGAAGAGGAGAGAAGCCTACTTTGAAAAGCAACAGCATCAGCAACAGGAAGCAG
ACCGACCTGGATACCTTTCATACCCATGTGAAAGACCCACCACAAGTTCAGGAGGACTCCGGAG
CAACCAAGGCAATGCTATGAGTGAAGAGGACGTGCTTCGGGCAACTGTGACTGTGTCTTTAGAA
ACTGCTAAAGACAGTTTGAAAGCAGAAAGAAAAAAATAGTCCCTTTAAAAATCATTTTGCCACC
ATGCTTTGTAACATTGTTTGTGTGATCACAGTGTAAGGTCCACTTTGGCAGCAGTGTGTTCACC
GGAAGGCAGCAGACACTGCATGGTTTGTAAGCAGAAAGGGCAGAAGCGTCCTAGGACTAAAGAA
CCACGAGATGCTAGCCAAAGAGGCAGTCAGCAATGAAAGAAACAACGTAGTTTTCTAAATGTCC
CTCCTTGTTTTTCAAATGTGCAATATCTGACTGAAATTATGGAATTTTCCTTGGCTCTTTTGGA
CCAACTCGTTAGCTCTTGCCACAGAACTTGATCCTGTAGAGTTCCGTCTTCTCTCTGCATTGGA
GCTGGCTTGGCTTGTTTGGGCTTTTCTTCATTTCACACCAACCTTTTGTGAAATATCGTTTGTA
TGTCTTGCTATGGAAAGATCAGTCTGTCTTTTCGTGTATGTGTCAGGCACATGGATGCTTCCTG
GTGTTATTTTCTCTGGTTTTGGTTATTTTCCTGCAAGTCTAACATGGTGATCTGTTGGTTTTAA
AGCCTTTTTTAGTGGGATCATTATTTAACTCTGGTGCATTCCTCTACTCTAAAGTCAGCCCTGT
TCTTCTAAACGAGCTGAGGTTTTTTGTGAGCACGTGCTTTCTCGATGCCCTGCGAAGGATTTCA
GCTGTGTCCTGGCTGACTTATTTCCTTTCTTTTCCAGTTGAGAAAGGAGAGACAGAGGATACAA
ATATATTTCCTTCTACTTAACGTTCTCCATGAATGTACCACAGGAGAACCCGCCCTTCAGTGCT
GGTGGTGGGTTCGTTCCAGTGTTTCTTCTGTGTCAAGAGCTTAGTGTTCTGTATATGATTAAGT
CCTGGAAAATAGGTGCCTGCTTCACTTTTTAATTTTTAAAAATAAATTTTTTTTTATTTTAGTA
GAAAATAGGCTGCTAGGATGATGGTCTAGGATGTGAAAGTAATTTACTAATGAAAATATATTTA
AATATACTGTGGTTGACCCTTGCTACCATGTTAAAATTGTTAAGAATTACAGAAGTCACAATAC
TTAAAGGATCTGTTTGTAAATACGAAAGTCCTTAGTTTTGATAAACATTAAGTGAGATGCACAT
CTGGTCTTGCTGGGTCAATGCTTTGGTATGATTTGGGTGGAAATTAACTATGTGTGTTTGTCCT
GGGTGTCATAGATCCTGATACTGTTTTCCCCTCCCTACCCTTTTTGAAGCCCCTTTGAATGTTA
ACTTGTACATAGGTAAAATCAAGAAGAAATTTTAGCCAACAGCTTAGTAAGGTGAAGCATGGTA
TATTGCTCTACTGATGTGTGTTCTGCACACGTTTTTATCAGGGAAAGTTTTTGATGTAGGATTT
ATTGCTATCTAACTGAAAATGATACAAATATTTTTATTTATGATTATGAAATAGCTTTCTCTTG
GATAGGATGGATTGTTTTGTTTGGCTGTGCTAGGGATTGAACCCAGAGCCTCGTGTGTGCTAGG
TAAGCGCTCTACCTCTGAGCTAGATCCCCAGATCCAAAACATGTGTTTCTCTTTTGTTTGTTTT
TTTTCTTAGCCATTTTGTGCCAATTACAGTTTCTCTTTTTGAAATTTGCCTCATGAAAAATTAG
ACAGTCCTATTTTCAAATCTATGAAGTTTTCTTTTAGTAATTGCAAAGGTTCAGAATTATGCAG
CTGTAGGCTGTTGGGTTAGGCCTTTGCTTACAGTGGATTTTTACACTGAAGTATGCAGCTACCC
CAAGTGTGCTGGTCACATGTCGAGCATTGACCCTTTCCTTTACCCTTTGAAAAACCACATTACA
CTTTCCGCACACTCAGATTGATGTGCTGCCTGACAGCCATTTCAGTTTTAACTTCAGAGTTTAT
AAAACGTTCATGTAACACACCCTACGTAAATCATGTATGAAATACAGCATGTTGATCTTTTATT
AGAAATGTTTTAAAGAGAAACTGAGTGTACACTGAATATATTTGAGTGCATTTTTTAAGTTTGT
TATAAATTGTGGTATTTGTCCAGGCAAATCCAAAATCACCATTGAACTGCCATCCCTTCTATTG
ACCTAGGCTTACCTAAACATTTAGATTCATTATTAATGAGTAGGCAGCATGAAAAGATGCCAAT
GCTTATTATAACCACAGTATCCAAAGTGTAAGAGTTGTATGACATTCACGTCCGTACACAGGAG
CTGCTGTTTACAGTACTGCAGGATAGATGGGCCAGGGACTCCGCTGTCATGGTCCTGTTATGGA
CTTAACTGACATTTCCATTCTGTTTTTACCAATTGGAATACTTTAATGTTTAATATTTAAACTA
CTGATACCATTTTTCTAATGTGTAACTTATACTACCAAATAAAATATGTACAGCCAGAATGCTA
GTGTTAGAACCAAGAGTAGGAACCCTCTGGAGACCAGGCATGGTGCTACATGCCTTCAATCCCC
GTGCCTGGGAGTCAGAGGCAGGCAGATTGCTTTTTGAGTTCAAAGCCAGTCTAGTCTACAGAGT
AAGTTCCAAACTTGCTGCAGCTGCATAGTAGGACTCTGTCTTTAAAACAAAACAAAACACAACA
CAACACAACACAACAAAAACCTTTGGGACATTTCATTGATTAGATGGTTTGATACAGTCAGTGC
AGGTGAACTCCACGGTGAAGTTTTAAATGTTGGCCAAATAATTTACACTTCACAGACTATCTGA
GGCGGTGCTTTTTTTTTTTTCCTGAAAACTTGATTTTTCTTGATGAAGCCAAAGTTAATGAGGA
TGAATTCTCAAAAGGAGTAGTCTGCATTGCTTTATTTAATATCAGGTTGAGTAAAATAAGTTTT
ATTCATGTCAGAGTCTAAGCCACAGATTTTGAATACCTGAATGTTTGGTACTATTTAAATCATG
CCAGTGCCAAGAATTACTAAGTTCTTAGAACTGGCCCCTGTGCCATGCCTGAGTCCAGATTGGG
CAGTGCAGAACCCAGATGTGCTATCCGAGAGTCTGAAGCTGGGGAGTCTGATGTTTTAGTCAGG
AAGAGGCTTCAGTTAATACCGAAACCTCCAGAGACAGGTTATTGTCAGGCAGTGCCATGTGCTC
AGTGGTAGAGCAGCCACCTAGAGGCCCAGGCCTTGTGCTCAGTCCCTAACACTGCAAAAGAAGA
ACAGGGGCTCACAGTGAATCCACGTTCAGAGAGGCCTTACAGGGAGTATTTTCCAAGGGAGTTG
TTTGTTGTAGTTTAGTCCTAACAAGTGTAGAGCTGTAATAGGTGACCTTAAGAAAAACCAGGTG
GCATCAGCTAATCAGTACAGAGTTTTTTGGTTTTCATATTTAGAAACTCTCCCTTTATTCCTAA
TTCGTTTATAATTAAAGACAAGAATTGGTTTTGTATTTTTCAAAGTTTTATGCATAATAAAATG
TTTTGTTGTAGTCTTTCAGGAATGAAAAGGATATTGACTTTTTTTTTAAAATTTGAGGTGTGTG
TGTGTGTGTGTGTGTGCGCACATGTGTGTGTGTGCAAGCACCTAAAATGGGTCTGTCATTTTAA
GAATTAGCACAAAAAATATAGTCCCTGTTATGGAGGTTTAATAATACCAGTACACATTGTAAGT
GCAGTCCTAGGTGAGGCACTAGTGAGAAGTGTGTGGAAAATGCAGTTACCTAGGTAGGACTCAC
TTGTCTCTTAAGTAGTTTAAAGGTAGTATGTTTCCTGGAATTTTTTAATGTTTTTTTTTCTTTT
TTTTGAGGAAGATAGACATTTGAAATGTGATTATCTAATTTCTATAACACTGGACTAATAGGAA
TAACTTTTTAAAAAATGACTGTTCTGTATAGATAAAATATATTGAACTCAAGTGCAAAAGCCAT
GAGATTAAAGGCATTGTCTTCTGGTCAATATGATGCACTGTAGCGGAGCAGTTCCTCAGGACAC
AACTCTGCAGCCCTTCCTCCTGTGCCTCAAGTTGATGGCTGCCACTCCACAGGTCTTCCGTCTG
TCTGCTCCTTTGAAAGCTGGGCTTCCAAAGCACTGTTGAACACTGAGGGTCCTGTTGATATTAA
TGAGTTGTATTTTAAATATCAGAGATTATTAAATAAAGAGAATGATTTTCTATTAA

hide sequence

RefSeq Acc Id:

XM_017594337 ⟹ XP_017449826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,771 (-)	NCBI
mRatBN7.2	6	121,072,228 - 121,107,867 (-)	NCBI
Rnor_6.0	6	125,817,420 - 125,853,418 (-)	NCBI

Sequence:

show sequence

GGGGGCGGAGCTGCTGGAGGGGGCTGCTCCGCGCCGGGGCCGTTGGCTCCAGACAAATAAACAT
GGAGTCCATCTTCCACGAGAAACAAGAAGGCTCCCTTTGCGCTCAGCATTGCTTGAATAACCTC
TTACAAGGAGAGTATTTTAGCCCCGTGGAGCTGTCCTCAATTGCACACCAGCTGGATGAAGAGG
AGAGGCTGCGGATGGCGGAAGGAGGGGTCACCAGCGAAGACTACCGCACATTTTTACAGCAGCC
TTCTGGAAATATGGACGACAGCGGCTTTTTCTCTATTCAAAGTCCCTATTCTCTAGCATTTCCA
CCCAGGACTTCGCTTGTTCACCTTGGGAGGCCCAGTGGGCCTGAGCTGAGAGCAGAGGTTATAA
GCAATGCCTTGAAAGTTTGGGGTTTAGAACTAATCCTATTCAACAGTCCAGAGTACCAGAGGCT
CAGAATCGATCCTATAAATGAAAGATCCTTTATATGCAATTATAAAGAACACTGGTTTACAGTT
AGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTTTGTTGACTGGTCCAGAGCTAATATCAG
ATACATACCTCGCACTGTTCTTGGCTCAGTTACAGCAAGAAGGTTATTCTATATTTGTTGTTAA
GGGTGATCTGCCAGATTGTGAAGCTGACCAACTTTTACAGATGATCAAGGTCCAACAGATGCAT
CGACCAAAACTTATTGGAGAAGAACTCGCACATCTGAAAGAGCAGAGCGCCCTCAAAGCAGATC
TGGAGCGAGTCTTAGAGGCGGCTGACGGGCCGGGAATGTTTGATGATGATGAGGACGATTTACA
GAGGGCTCTGGCCATGAGTCGCCAGGAAATCGACATGGAGGACGAAGAAGCCGATCTCCGCAGG
GCCATTCAGCTCAGTATGCAAGGTAGTTCCAGAGGTATGTGTGAAGATAGTCCGCAGACATCAA
GCACAGATCTTTCTTCAGAAGAGCTGCGGAAGAGGAGAGAAGCCTACTTTGAAAAGCAACAGCA
TCAGCAACAGGAAGCAGACCGACCTGGATACCTTTCATACCCATGTGAAAGACCCACCACAAGT
TCAGGAGGACTCCGGAGCAACCAAGGCTGACAGGATGTGCCTTCATTCCTGATGCTGTGCCTGC
TAAGGATTGAACCCAGAGCCTTGTGCGTGCCAGGCAAGCATCCTCCAACTCAGCTACACCTCTA
GTTCAGAAGTCTGTCTTGTGATGAGTGAGGACCTTGCAGAAACTGTCTGAGAACTTTGTTTTCT
CTCCCAGCAGGCAATGCTATGAGTGAAGAGGACGTGCTTCGGGCAACTGTGACTGTGTCTTTAG
AAACTGCTAAAGACAGTTTGAAAGCAGAAAGAAAAAAATAGTCCCTTTAAAAATCATTTTGCCA
CCATGCTTTGTAACATTGTTTGTGTGATCACAGTGTAAGGTCCACTTTGGCAGCAGTGTGTTCA
CCGGAAGGCAGCAGACACTGCATGGTTTGTAAGCAGAAAGGGCAGAAGCGTCCTAGGACTAAAG
AACCACGAGATGCTAGCCAAAGAGGCAGTCAGCAATGAAAGAAACAACGTAGTTTTCTAAATGT
CCCTCCTTGTTTTTCAAATGTGCAATATCTGACTGAAATTATGGAATTTTCCTTGGCTCTTTTG
GACCAACTCGTTAGCTCTTGCCACAGAACTTGATCCTGTAGAGTTCCGTCTTCTCTCTGCATTG
GAGCTGGCTTGGCTTGTTTGGGCTTTTCTTCATTTCACACCAACCTTTTGTGAAATATCGTTTG
TATGTCTTGCTATGGAAAGATCAGTCTGTCTTTTCGTGTATGTGTCAGGCACATGGATGCTTCC
TGGTGTTATTTTCTCTGGTTTTGGTTATTTTCCTGCAAGTCTAACATGGTGATCTGTTGGTTTT
AAAGCCTTTTTTAGTGGGATCATTATTTAACTCTGGTGCATTCCTCTACTCTAAAGTCAGCCCT
GTTCTTCTAAACGAGCTGAGGTTTTTTGTGAGCACGTGCTTTCTCGATGCCCTGCGAAGGATTT
CAGCTGTGTCCTGGCTGACTTATTTCCTTTCTTTTCCAGTTGAGAAAGGAGAGACAGAGGATAC
AAATATATTTCCTTCTACTTAACGTTCTCCATGAATGTACCACAGGAGAACCCGCCCTTCAGTG
CTGGTGGTGGGTTCGTTCCAGTGTTTCTTCTGTGTCAAGAGCTTAGTGTTCTGTATATGATTAA
GTCCTGGAAAATAGGTGCCTGCTTCACTTTTTAATTTTTAAAAATAAATTTTTTTTTATTTTAG
TAGAAAATAGGCTGCTAGGATGATGGTCTAGGATGTGAAAGTAATTTACTAATGAAAATATATT
TAAATATACTGTGGTTGACCCTTGCTACCATGTTAAAATTGTTAAGAATTACAGAAGTCACAAT
ACTTAAAGGATCTGTTTGTAAATACGAAAGTCCTTAGTTTTGATAAACATTAAGTGAGATGCAC
ATCTGGTCTTGCTGGGTCAATGCTTTGGTATGATTTGGGTGGAAATTAACTATGTGTGTTTGTC
CTGGGTGTCATAGATCCTGATACTGTTTTCCCCTCCCTACCCTTTTTGAAGCCCCTTTGAATGT
TAACTTGTACATAGGTAAAATCAAGAAGAAATTTTAGCCAACAGCTTAGTAAGGTGAAGCATGG
TATATTGCTCTACTGATGTGTGTTCTGCACACGTTTTTATCAGGGAAAGTTTTTGATGTAGGAT
TTATTGCTATCTAACTGAAAATGATACAAATATTTTTATTTATGATTATGAAATAGCTTTCTCT
TGGATAGGATGGATTGTTTTGTTTGGCTGTGCTAGGGATTGAACCCAGAGCCTCGTGTGTGCTA
GGTAAGCGCTCTACCTCTGAGCTAGATCCCCAGATCCAAAACATGTGTTTCTCTTTTGTTTGTT
TTTTTTCTTAGCCATTTTGTGCCAATTACAGTTTCTCTTTTTGAAATTTGCCTCATGAAAAATT
AGACAGTCCTATTTTCAAATCTATGAAGTTTTCTTTTAGTAATTGCAAAGGTTCAGAATTATGC
AGCTGTAGGCTGTTGGGTTAGGCCTTTGCTTACAGTGGATTTTTACACTGAAGTATGCAGCTAC
CCCAAGTGTGCTGGTCACATGTCGAGCATTGACCCTTTCCTTTACCCTTTGAAAAACCACATTA
CACTTTCCGCACACTCAGATTGATGTGCTGCCTGACAGCCATTTCAGTTTTAACTTCAGAGTTT
ATAAAACGTTCATGTAACACACCCTACGTAAATCATGTATGAAATACAGCATGTTGATCTTTTA
TTAGAAATGTTTTAAAGAGAAACTGAGTGTACACTGAATATATTTGAGTGCATTTTTTAAGTTT
GTTATAAATTGTGGTATTTGTCCAGGCAAATCCAAAATCACCATTGAACTGCCATCCCTTCTAT
TGACCTAGGCTTACCTAAACATTTAGATTCATTATTAATGAGTAGGCAGCATGAAAAGATGCCA
ATGCTTATTATAACCACAGTATCCAAAGTGTAAGAGTTGTATGACATTCACGTCCGTACACAGG
AGCTGCTGTTTACAGTACTGCAGGATAGATGGGCCAGGGACTCCGCTGTCATGGTCCTGTTATG
GACTTAACTGACATTTCCATTCTGTTTTTACCAATTGGAATACTTTAATGTTTAATATTTAAAC
TACTGATACCATTTTTCTAATGTGTAACTTATACTACCAAATAAAATATGTACAGCCAGAATGC
TAGTGTTAGAACCAAGAGTAGGAACCCTCTGGAGACCAGGCATGGTGCTACATGCCTTCAATCC
CCGTGCCTGGGAGTCAGAGGCAGGCAGATTGCTTTTTGAGTTCAAAGCCAGTCTAGTCTACAGA
GTAAGTTCCAAACTTGCTGCAGCTGCATAGTAGGACTCTGTCTTTAAAACAAAACAAAACACAA
CACAACACAACACAACAAAAACCTTTGGGACATTTCATTGATTAGATGGTTTGATACAGTCAGT
GCAGGTGAACTCCACGGTGAAGTTTTAAATGTTGGCCAAATAATTTACACTTCACAGACTATCT
GAGGCGGTGCTTTTTTTTTTTTCCTGAAAACTTGATTTTTCTTGATGAAGCCAAAGTTAATGAG
GATGAATTCTCAAAAGGAGTAGTCTGCATTGCTTTATTTAATATCAGGTTGAGTAAAATAAGTT
TTATTCATGTCAGAGTCTAAGCCACAGATTTTGAATACCTGAATGTTTGGTACTATTTAAATCA
TGCCAGTGCCAAGAATTACTAAGTTCTTAGAACTGGCCCCTGTGCCATGCCTGAGTCCAGATTG
GGCAGTGCAGAACCCAGATGTGCTATCCGAGAGTCTGAAGCTGGGGAGTCTGATGTTTTAGTCA
GGAAGAGGCTTCAGTTAATACCGAAACCTCCAGAGACAGGTTATTGTCAGGCAGTGCCATGTGC
TCAGTGGTAGAGCAGCCACCTAGAGGCCCAGGCCTTGTGCTCAGTCCCTAACACTGCAAAAGAA
GAACAGGGGCTCACAGTGAATCCACGTTCAGAGAGGCCTTACAGGGAGTATTTTCCAAGGGAGT
TGTTTGTTGTAGTTTAGTCCTAACAAGTGTAGAGCTGTAATAGGTGACCTTAAGAAAAACCAGG
TGGCATCAGCTAATCAGTACAGAGTTTTTTGGTTTTCATATTTAGAAACTCTCCCTTTATTCCT
AATTCGTTTATAATTAAAGACAAGAATTGGTTTTGTATTTTTCAAAGTTTTATGCATAATAAAA
TGTTTTGTTGTAGTCTTTCAGGAATGAAAAGGATATTGACTTTTTTTTTAAAATTTGAGGTGTG
TGTGTGTGTGTGTGTGTGCGCACATGTGTGTGTGTGCAAGCACCTAAAATGGGTCTGTCATTTT
AAGAATTAGCACAAAAAATATAGTCCCTGTTATGGAGGTTTAATAATACCAGTACACATTGTAA
GTGCAGTCCTAGGTGAGGCACTAGTGAGAAGTGTGTGGAAAATGCAGTTACCTAGGTAGGACTC
ACTTGTCTCTTAAGTAGTTTAAAGGTAGTATGTTTCCTGGAATTTTTTAATGTTTTTTTTTCTT
TTTTTTGAGGAAGATAGACATTTGAAATGTGATTATCTAATTTCTATAACACTGGACTAATAGG
AATAACTTTTTAAAAAATGACTGTTCTGTATAGATAAAATATATTGAACTCAAGTGCAAAAGCC
ATGAGATTAAAGGCATTGTCTTCTGGTCAATATGATGCACTGTAGCGGAGCAGTTCCTCAGGAC
ACAACTCTGCAGCCCTTCCTCCTGTGCCTCAAGTTGATGGCTGCCACTCCACAGGTCTTCCGTC
TGTCTGCTCCTTTGAAAGCTGGGCTTCCAAAGCACTGTTGAACACTGAGGGTCCTGTTGATATT
AATGAGTTGTATTTTAAATATCAGAGATTATTAAATAAAGAGAATGATTTTCTATTAA

hide sequence

RefSeq Acc Id:

XM_039112811 ⟹ XP_038968739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,003 (-)	NCBI
mRatBN7.2	6	121,072,228 - 121,107,125 (-)	NCBI

RefSeq Acc Id:

XM_063262394 ⟹ XP_063118464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,771 (-)	NCBI

RefSeq Acc Id:

XM_063262395 ⟹ XP_063118465

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,904 (-)	NCBI

RefSeq Acc Id:

XM_063262396 ⟹ XP_063118466

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,771 (-)	NCBI

RefSeq Acc Id:

XM_063262397 ⟹ XP_063118467

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,676 (-)	NCBI

RefSeq Acc Id:

XM_063262398 ⟹ XP_063118468

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,502 (-)	NCBI

RefSeq Acc Id:

XM_063262399 ⟹ XP_063118469

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,873 (-)	NCBI

RefSeq Acc Id:

XM_063262400 ⟹ XP_063118470

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,837,107 - 126,872,919 (-)	NCBI

RefSeq Acc Id:

XM_063262401 ⟹ XP_063118471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,850,550 - 126,872,894 (-)	NCBI

RefSeq Acc Id:

XM_063262402 ⟹ XP_063118472

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,851,849 - 126,872,771 (-)	NCBI

RefSeq Acc Id:

XM_063262403 ⟹ XP_063118473

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,851,849 - 126,872,771 (-)	NCBI

RefSeq Acc Id:

XM_063262404 ⟹ XP_063118474

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	126,850,550 - 126,872,789 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_067734	(Get FASTA)	NCBI Sequence Viewer
	XP_006240547	(Get FASTA)	NCBI Sequence Viewer
	XP_006240548	(Get FASTA)	NCBI Sequence Viewer
	XP_006240549	(Get FASTA)	NCBI Sequence Viewer
	XP_006240550	(Get FASTA)	NCBI Sequence Viewer
	XP_006240552	(Get FASTA)	NCBI Sequence Viewer
	XP_006240555	(Get FASTA)	NCBI Sequence Viewer
	XP_017449826	(Get FASTA)	NCBI Sequence Viewer
	XP_038968739	(Get FASTA)	NCBI Sequence Viewer
	XP_063118464	(Get FASTA)	NCBI Sequence Viewer
	XP_063118465	(Get FASTA)	NCBI Sequence Viewer
	XP_063118466	(Get FASTA)	NCBI Sequence Viewer
	XP_063118467	(Get FASTA)	NCBI Sequence Viewer
	XP_063118468	(Get FASTA)	NCBI Sequence Viewer
	XP_063118469	(Get FASTA)	NCBI Sequence Viewer
	XP_063118470	(Get FASTA)	NCBI Sequence Viewer
	XP_063118471	(Get FASTA)	NCBI Sequence Viewer
	XP_063118472	(Get FASTA)	NCBI Sequence Viewer
	XP_063118473	(Get FASTA)	NCBI Sequence Viewer
	XP_063118474	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAA72986	(Get FASTA)	NCBI Sequence Viewer
	EDL81739	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007505.1
	ENSRNOP00000086715.1
	ENSRNOP00000091691.1
	ENSRNOP00055020411
	ENSRNOP00060005977
	ENSRNOP00065019676
GenBank Protein	O35815	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_067734 ⟸ NM_021702

- UniProtKB:

O35815 (UniProtKB/Swiss-Prot), A6JEJ5 (UniProtKB/TrEMBL), A0A8I6A6D3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQ
PSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGK
QWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIKVQQMHRPKLI
GEELAHLKEQSALKADLERVLEAADGPGMFDDDEDDLQRALAMSRQEIDMEDEEADLRRAIQLS
MQGSSRGMCEDSPQTSSTDLSSEELRKRREAYFEKQQHQQQEADRPGYLSYPCERPTTSSGGLR
SNQAGNAMSEEDVLRATVTVSLETAKDSLKAERKK

hide sequence

RefSeq Acc Id:	XP_006240550 ⟸ XM_006240488
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQP SGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQ WFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIKVQQMHRPKLIG EELAHLKEQSALKADLERVLEAADGPGMFDDDEDDLQRALAMSRQEIDMEDEEADLRRAIQLSM QGSSRGMCEDSPQTSSTDLSSEELRKRREAYFEKQQHQQQEADRPGYLSYPCERPTTSSGGLRS NQAGNAMSEEDVLRATVTVSLETAKDSLKAERKK hide sequence

RefSeq Acc Id:	XP_006240548 ⟸ XM_006240486
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQP SGNMDDSGFFSIQSPYSLAFPPRTSLVHLGRPSGPELRAEVISNALKVWGLELILFNSPEYQRL RIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVK GDLPDCEADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERVLEAADGPGMFDDDEDDLQ RALAMSRQEIDMEDEEADLRRAIQLSMQGSSRGMCEDSPQTSSTDLSSEELRKRREAYFEKQQH QQQEADRPGYLSYPCERPTTSSGGLRSNQAGNAMSEEDVLRATVTVSLETAKDSLKAERKK hide sequence

RefSeq Acc Id:	XP_006240555 ⟸ XM_006240493
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQ PSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGK QWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIKVQQMHRPKLI GEELAHLKEQSALKADLERVLEAADGPGMFDDDEDDLQRALAMSRQEIDMEDEEADLRRAIQLS MQGSSRGMCEDSPQTSSTDLSSEELRKRREAYFEKQQHQQQEADRPGYLSYPCERPTTSSGGLR SNQGNAMSEEDVLRATVTVSLETAKDSLKAERKK hide sequence

RefSeq Acc Id:	XP_006240549 ⟸ XM_006240487
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQ PSGNMDDSGFFSIQSPYSLAFPPRTSLVHLGRPSGPELRAEVISNALKVWGLELILFNSPEYQR LRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVV KGDLPDCEADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERVLEAADGPGMFDDDEDDL QRALAMSRQEIDMEDEEADLRRAIQLSMQGSSRGMCEDSPQTSSTDLSSEELRKRREAYFEKQQ HQQQEADRPGYLSYPCERPTTSSGGLRSNQGNAMSEEDVLRATVTVSLETAKDSLKAERKK hide sequence

RefSeq Acc Id:	XP_006240547 ⟸ XM_006240485
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GJ61 (UniProtKB/TrEMBL), A0A8I6A6D3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQ PSGNMDDSGFFSIQSPYSLAFPPRTSLVHLGRPSGPELRAEVISNALKVWGLELILFNSPEYQR LRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVV KGDLPDCEADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERVLEAADGPGMFDDDEDDL QRALAMSRQEIDMEDEEADLRRAIQLSMQGSSRGMCEDSPQTSSTDLSSEELRKRREAYFEKQQ HQQQEADRPGYLSYPCERPTTSSGGLRSNQAGNAMSEEDVLRATVTVSLETAKDSLKAERKK hide sequence

RefSeq Acc Id:	XP_006240552 ⟸ XM_006240490
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQSPYSLAFPPRTSLVHLGRPSGPELRAEVISNAL KVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYL ALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERV LEAADGPGMFDDDEDDLQRALAMSRQEIDMEDEEADLRRAIQLSMQGSSRGMCEDSPQTSSTDL SSEELRKRREAYFEKQQHQQQEADRPGYLSYPCERPTTSSGGLRSNQAGNAMSEEDVLRATVTV SLETAKDSLKAERKK hide sequence

RefSeq Acc Id:	XP_017449826 ⟸ XM_017594337
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERLRMAEGGVTSEDYRTFLQQ PSGNMDDSGFFSIQSPYSLAFPPRTSLVHLGRPSGPELRAEVISNALKVWGLELILFNSPEYQR LRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVV KGDLPDCEADQLLQMIKVQQMHRPKLIGEELAHLKEQSALKADLERVLEAADGPGMFDDDEDDL QRALAMSRQEIDMEDEEADLRRAIQLSMQGSSRGMCEDSPQTSSTDLSSEELRKRREAYFEKQQ HQQQEADRPGYLSYPCERPTTSSGGLRSNQG hide sequence

Ensembl Acc Id:

ENSRNOP00000007505 ⟸ ENSRNOT00000007505

RefSeq Acc Id:	XP_038968739 ⟸ XM_039112811
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000086715 ⟸ ENSRNOT00000098027

Ensembl Acc Id:

ENSRNOP00000091691 ⟸ ENSRNOT00000099444

RefSeq Acc Id:	XP_063118470 ⟸ XM_063262400
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118465 ⟸ XM_063262395
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118469 ⟸ XM_063262399
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118466 ⟸ XM_063262396
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118464 ⟸ XM_063262394
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118467 ⟸ XM_063262397
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118468 ⟸ XM_063262398
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6A6D3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063118471 ⟸ XM_063262401
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063118474 ⟸ XM_063262404
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063118473 ⟸ XM_063262403
- Peptide Label:	isoform X15

RefSeq Acc Id:	XP_063118472 ⟸ XM_063262402
- Peptide Label:	isoform X14

Protein Domains

Josephin UIM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35815-F1-model_v2	AlphaFold	O35815	1-355	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694779

Promoter ID:

EPDNEW_R5304

Type:

initiation region

Name:

Atxn3_1

Description:

ataxin 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	125,853,368 - 125,853,428	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621567	AgrOrtholog
BioCyc Gene	G2FUF-36463	BioCyc
Ensembl Genes	ENSRNOG00000005470	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055014517	UniProtKB/Swiss-Prot
	ENSRNOG00060004720	UniProtKB/Swiss-Prot
	ENSRNOG00065015145	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007505.3	UniProtKB/Swiss-Prot
	ENSRNOT00000098027.1	UniProtKB/TrEMBL
	ENSRNOT00000099444.1	UniProtKB/TrEMBL
	ENSRNOT00055024976	UniProtKB/Swiss-Prot
	ENSRNOT00060007983	UniProtKB/Swiss-Prot
	ENSRNOT00065025136	UniProtKB/Swiss-Prot
Gene3D-CATH	3.90.70.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S15/NS1, RNA-binding	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Ataxin-3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Josephin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UIM_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:60331	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	60331	ENTREZGENE
PANTHER	ATAXIN-3-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR14159	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Josephin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SUIM_assoc	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Atxn3	PhenoGen
PRINTS	JOSEPHIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	JOSEPHIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005470	RatGTEx
	ENSRNOG00055014517	RatGTEx
	ENSRNOG00060004720	RatGTEx
	ENSRNOG00065015145	RatGTEx
SMART	Josephin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	UIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6A6D3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GJ61	ENTREZGENE, UniProtKB/TrEMBL
	A6JEJ5	ENTREZGENE, UniProtKB/TrEMBL
	ATX3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-12-14	Atxn3	ataxin 3	Rsca3	rsca3 protein	Symbol and Name updated	1299863	APPROVED
2002-08-07	Rsca3	rsca3 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - KEGG (archival)