Ces2e (carboxylesterase 2E) - Rat Genome Database

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Pathways
Gene: Ces2e (carboxylesterase 2E) Rattus norvegicus
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Symbol: Ces2e
Name: carboxylesterase 2E
RGD ID: 621563
Description: Enables retinyl-palmitate esterase activity. Predicted to be involved in retinoid metabolic process. Predicted to be located in endoplasmic reticulum. Orthologous to human CES2 (carboxylesterase 2); INTERACTS WITH 17beta-estradiol; acetamide; beta-naphthoflavone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: carboxylesterase 5; carboxylic ester hydrolase; Ces5; Loc192257; phenobarbital-inducible carboxylesterase (liver); pyrethroid hydrolase Ces2e
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819163,899 - 179,274 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl19163,859 - 179,308 (+)EnsemblGRCr8
mRatBN7.219157,447 - 172,822 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19157,407 - 172,856 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx19162,415 - 177,795 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.019896,113 - 911,493 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.019171,345 - 186,725 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01985,679 - 100,386 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1985,606 - 100,424 (+)Ensemblrn6Rnor6.0
Rnor_5.01986,201 - 100,908 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41965,698 - 82,042 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera19153,546 - 166,005 (+)NCBICelera
RGSC_v3.11965,705 - 82,042 (+)NCBI
Cytogenetic Map19p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Recommended nomenclature for five mammalian carboxylesterase gene families: human, mouse, and rat genes and proteins. Holmes RS, etal., Mamm Genome. 2010 Oct;21(9-10):427-41. Epub 2010 Oct 8.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Identification of microsomal rat liver carboxylesterases and their activity with retinyl palmitate. Sanghani SP, etal., Eur J Biochem 2002 Sep;269(18):4387-98.

Genomics

Comparative Map Data
Ces2e
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819163,899 - 179,274 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl19163,859 - 179,308 (+)EnsemblGRCr8
mRatBN7.219157,447 - 172,822 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19157,407 - 172,856 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx19162,415 - 177,795 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.019896,113 - 911,493 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.019171,345 - 186,725 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01985,679 - 100,386 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1985,606 - 100,424 (+)Ensemblrn6Rnor6.0
Rnor_5.01986,201 - 100,908 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41965,698 - 82,042 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera19153,546 - 166,005 (+)NCBICelera
RGSC_v3.11965,705 - 82,042 (+)NCBI
Cytogenetic Map19p14NCBI
Ces2e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,652,892 - 105,661,304 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,652,892 - 105,661,304 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388104,926,260 - 104,934,672 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,926,260 - 104,934,672 (+)Ensemblmm10GRCm38
MGSCv378107,450,160 - 107,458,572 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368107,815,399 - 107,823,796 (+)NCBIMGSCv36mm8
Celera8109,148,515 - 109,156,927 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI

Variants

.
Variants in Ces2e
67 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:48
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000015724
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131969901Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124694445Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127361636Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 3 4 13 57 60 50 50 4 86 12 5 13 22 10

Sequence


Ensembl Acc Id: ENSRNOT00000015724   ⟹   ENSRNOP00000015724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl19163,859 - 179,308 (+)Ensembl
mRatBN7.2 Ensembl19157,407 - 172,856 (+)Ensembl
Rnor_6.0 Ensembl1985,606 - 100,424 (+)Ensembl
RefSeq Acc Id: NM_001100477   ⟹   NP_001093947
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819163,899 - 179,274 (+)NCBI
mRatBN7.219157,447 - 172,822 (+)NCBI
Rnor_6.01985,679 - 100,386 (+)NCBI
Rnor_5.01986,201 - 100,908 (+)NCBI
RGSC_v3.41965,698 - 82,042 (+)RGD
Celera19153,546 - 166,005 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001093947 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA23607 (Get FASTA)   NCBI Sequence Viewer  
  EDL87215 (Get FASTA)   NCBI Sequence Viewer  
  EDL87216 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015724
  ENSRNOP00000015724.5
GenBank Protein G3V7J5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001093947   ⟸   NM_001100477
- Peptide Label: precursor
- UniProtKB: O35535 (UniProtKB/Swiss-Prot),   G3V7J5 (UniProtKB/Swiss-Prot),   A6JXT7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000015724   ⟸   ENSRNOT00000015724
Protein Domains
Carboxylesterase type B

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V7J5-F1-model_v2 AlphaFold G3V7J5 1-567 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700903
Promoter ID:EPDNEW_R11427
Type:initiation region
Name:Ces2e_1
Description:carboxylesterase 2E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01985,639 - 85,699EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621563 AgrOrtholog
BioCyc Gene G2FUF-6674 BioCyc
Ensembl Genes ENSRNOG00000011635 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015724 ENTREZGENE
  ENSRNOT00000015724.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot
InterPro AB_hydrolase UniProtKB/Swiss-Prot
  CarbesteraseB UniProtKB/Swiss-Prot
  Carboxylesterase_B_AS UniProtKB/Swiss-Prot
  Carboxylesterase_B_CS UniProtKB/Swiss-Prot
  Type-B_Carboxylest/Lipase UniProtKB/Swiss-Prot
NCBI Gene 192257 ENTREZGENE
PANTHER CARBOXYLESTERASE UniProtKB/Swiss-Prot
Pfam COesterase UniProtKB/Swiss-Prot
PhenoGen Ces2e PhenoGen
PROSITE CARBOXYLESTERASE_B_1 UniProtKB/Swiss-Prot
  CARBOXYLESTERASE_B_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011635 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot
UniProt A6JXT7 ENTREZGENE, UniProtKB/TrEMBL
  EST2E_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  O35535 ENTREZGENE
UniProt Secondary O35535 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-11-18 Ces2e  carboxylesterase 2E  Ces5  carboxylesterase 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Ces5  carboxylesterase 5  Loc192257  phenobarbital-inducible carboxylesterase (liver)  Symbol and Name updated 1299863 APPROVED
2002-08-07 Loc192257  phenobarbital-inducible carboxylesterase (liver)      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in metabolizing tissues, including lung, small intestine, liver, stomach, kidney, skin, and testis 724430