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Gene: Taf2 (TATA-box binding protein associated factor 2) Rattus norvegicus

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Symbol:

Taf2

Name:

TATA-box binding protein associated factor 2

RGD ID:

621487

Description:

Predicted to enable chromatin binding activity and transcription cis-regulatory region binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in response to paraquat. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex and transcription factor TFTC complex. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 40. Orthologous to human TAF2 (TATA-box binding protein associated factor 2); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor; TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150 kD; TAF2 RNA polymerase II, TATA box binding protein-associated factor, 150 kD; TAFIIB; transcription initiation factor TFIID subunit 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TAF2 (TATA-box binding protein associated factor 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Taf2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Taf2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TAF2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TAF2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Taf2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TAF2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TAF2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Taf2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Taf2 (TATA-box binding protein associated factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SCNN1G (sodium channel epithelial 1 subunit gamma)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TAF2 (TATA-box binding protein associated factor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Taf2 (TATA-box binding protein associated factor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	taf2 (TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Taf2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	TAF2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	TAF2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	taf-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	taf2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	taf2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	88,312,374 - 88,369,399 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	88,312,374 - 88,369,377 (-)	Ensembl				GRCr8
mRatBN7.2	7	86,422,613 - 86,479,616 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	86,422,613 - 86,479,616 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	88,306,193 - 88,362,784 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	90,507,402 - 90,563,993 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	90,312,868 - 90,369,459 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	94,698,987 - 94,755,924 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	94,698,987 - 94,755,924 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	95,339,750 - 95,396,754 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	91,542,400 - 91,599,759 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	83,216,946 - 83,273,562 (-)	NCBI		Celera
RGSC_v3.1	7	91,589,861 - 91,597,921 (-)	NCBI
Cytogenetic Map	7	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive intellectual developmental disorder 40 (ISO)

genetic disease (ISO)

intellectual disability (ISO)

microcephaly (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

ammonium chloride (EXP)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cylindrospermopsin (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

flutamide (EXP)

FR900359 (ISO)

gentamycin (EXP)

glycidol (EXP)

hydrogen cyanide (ISO)

hydrogen peroxide (ISO)

irinotecan (ISO)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

paraquat (EXP)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP)

potassium cyanide (ISO)

propiconazole (EXP)

rac-lactic acid (ISO)

resveratrol (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G2/M transition of mitotic cell cycle (IEA,ISO)

mRNA transcription by RNA polymerase II (IEA,ISO)

positive regulation of transcription initiation by RNA polymerase II (IEA,ISO)

regulation of transcription by RNA polymerase II (IEA,ISO)

response to paraquat (IEP)

RNA polymerase II preinitiation complex assembly (IEA,ISO)

transcription initiation at RNA polymerase II promoter (IBA,IEA,ISO)

Cellular Component

nucleus (IEA,ISO)

transcription factor TFIID complex (IBA,IEA,ISO)

transcription factor TFTC complex (IEA,ISO)

Molecular Function

chromatin binding (IBA)

protein binding (ISO)

RNA polymerase II general transcription initiation factor activity (IBA)

transcription cis-regulatory region binding (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA polymerase II transcription initiation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Structural bioinformatics of the general transcription factor TFIID.	Malkowska M, etal., Biochimie. 2013 Apr;95(4):680-91. doi: 10.1016/j.biochi.2012.10.024. Epub 2012 Nov 9.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Comprehensive gene review and curation	RGD comprehensive gene curation
9.	Paraquat-induced gene expression in rat lung tissues using a differential display reverse transcription-polymerase chain reaction.	Tomita M, etal., Arch Toxicol 2002 Sep;76(9):530-7.

Additional References at PubMed

PMID:9418870	PMID:9774672	PMID:10373431	PMID:10409744	PMID:12477932	PMID:14580349	PMID:27007846

Genomics

Comparative Map Data

Taf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	88,312,374 - 88,369,399 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	88,312,374 - 88,369,377 (-)	Ensembl				GRCr8
mRatBN7.2	7	86,422,613 - 86,479,616 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	86,422,613 - 86,479,616 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	88,306,193 - 88,362,784 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	90,507,402 - 90,563,993 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	90,312,868 - 90,369,459 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	94,698,987 - 94,755,924 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	94,698,987 - 94,755,924 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	95,339,750 - 95,396,754 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	91,542,400 - 91,599,759 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	83,216,946 - 83,273,562 (-)	NCBI		Celera
RGSC_v3.1	7	91,589,861 - 91,597,921 (-)	NCBI
Cytogenetic Map	7	q32	NCBI

TAF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	119,730,774 - 119,832,841 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	119,730,774 - 119,832,863 (-)	Ensembl			hg38	GRCh38
GRCh37	8	120,743,014 - 120,845,081 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	120,812,195 - 120,914,255 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	120,812,195 - 120,914,255	NCBI
Celera	8	116,932,070 - 117,034,135 (-)	NCBI		Celera
Cytogenetic Map	8	q24.12	NCBI
HuRef	8	116,063,646 - 116,165,955 (-)	NCBI		HuRef
CHM1_1	8	120,783,731 - 120,885,905 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	120,859,650 - 120,961,708 (-)	NCBI		T2T-CHM13v2.0

Taf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	54,878,525 - 54,935,580 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	54,878,527 - 54,935,548 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	55,015,129 - 55,072,187 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	55,015,131 - 55,072,152 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	54,846,684 - 54,903,707 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	54,845,212 - 54,902,235 (-)	NCBI		MGSCv36	mm8
Celera	15	56,554,123 - 56,610,674 (-)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI
cM Map	15	21.96	NCBI

Taf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	25,457,565 - 25,515,930 (-)	Ensembl
ChiLan1.0	NW_004955417	25,457,615 - 25,515,923 (-)	NCBI	ChiLan1.0	ChiLan1.0

TAF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	137,156,881 - 137,259,288 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	112,668,784 - 112,770,380 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	116,421,520 - 116,523,138 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	119,170,327 - 119,271,405 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	119,170,327 - 119,271,405 (-)	Ensembl			panPan2	panpan1.1

TAF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	18,724,408 - 18,824,025 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	18,729,234 - 18,823,979 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	18,732,315 - 18,837,051 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	19,053,514 - 19,153,172 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	19,057,530 - 19,153,414 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	18,780,662 - 18,880,287 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	18,879,633 - 18,979,783 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	19,112,087 - 19,210,511 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Taf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	19,445,742 - 19,525,705 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	26,871,847 - 26,951,806 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	26,871,865 - 26,951,804 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TAF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	19,180,320 - 19,267,071 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	19,180,215 - 19,267,416 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	20,215,503 - 20,284,755 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TAF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	114,291,325 - 114,395,189 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	114,290,866 - 114,395,537 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	25,892,245 - 25,996,589 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Taf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624763	17,806,280 - 17,907,547 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624763	17,801,835 - 17,907,538 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Taf2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	229,437,133 - 229,490,458 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Taf2
424 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	852
Count of miRNA genes:	327
Interacting mature miRNAs:	423
Transcripts:	ENSRNOT00000040836
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053722	Scort27	Serum corticosterone level QTL 27	2.41	0.0083	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	45113903	90113903	Rat
1331728	Bp214	Blood pressure QTL 214	2.825		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	82111245	123048330	Rat
2317035	Aia16	Adjuvant induced arthritis QTL 16	2.71		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	7	71103011	106126789	Rat
1357336	Gluco6	Glucose level QTL 6	3.4		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	7	51700643	96700643	Rat
1358361	Sradr5	Stress Responsive Adrenal Weight QTL 5	5.55		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	7	31770293	110435881	Rat
70159	Bp61	Blood pressure QTL 61		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	73618702	118618702	Rat
1298525	Cm1	Cardiac mass QTL 1	2.7		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	7	56625161	101625161	Rat
1357338	Stl17	Serum triglyceride level QTL 17	3.23		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	71621154	114982716	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
1559283	Emca4	Estrogen-induced mammary cancer QTL 4	3.7		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	7	63889858	108889858	Rat
1300151	Bp181	Blood pressure QTL 181	3.36		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	7	55498584	105834451	Rat
738030	Anxrr8	Anxiety related response QTL 8	4.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	48475049	93475049	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
7411607	Foco15	Food consumption QTL 15		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
631201	Panci1	Pancreas inflammation QTL 1	0	0.001	pancreas integrity trait (VT:0010560)	percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)	7	73557047	118557047	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
1331768	Kidm10	Kidney mass QTL 10	4.62096		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	82111245	123048330	Rat
1641908	Teswt1	Testicular weight QTL 1	3.28		testis mass (VT:1000644)	both testes wet weight (CMO:0000175)	7	82111245	96700643	Rat
61357	Bp38	Blood pressure QTL 38	1.6	0.052	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	40540077	123682549	Rat
2316947	Rf58	Renal function QTL 58	7.8		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	7	49682832	115766396	Rat
10450862	Kidm55	Kidney mass QTL 55	4.9		kidney mass (VT:0002707)	kidney weight (CMO:0000081)	7	72725037	117725037	Rat
724537	Niddm52	Non-insulin dependent diabetes mellitus QTL 52		0.02	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	82111245	95485241	Rat
1298528	Bp169	Blood pressure QTL 169		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	62963207	107963207	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1576303	Ept7	Estrogen-induced pituitary tumorigenesis QTL 7	3.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	7	63889858	108889858	Rat
7411654	Foco25	Food consumption QTL 25	9.3	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	7	77807807	122807807	Rat
10450856	Livw4	Liver weight QTL 4	3.8		liver mass (VT:0003402)	liver weight (CMO:0000092)	7	72725037	117725037	Rat
2316955	Stl24	Serum triglyceride level QTL 24	7.1		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	7	49682832	115766396	Rat
10402855	Bp379	Blood pressure QTL 379		0.21	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	78682549	123682549	Rat
2316952	Pur22	Proteinuria QTL 22	5.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	7	49682832	115766396	Rat
2303582	Gluco53	Glucose level QTL 53	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	7	48603087	93603087	Rat
631540	Bw9	Body weight QTL 9	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	7	71621154	119349044	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH142793

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	86,422,672 - 86,422,802 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	94,699,047 - 94,699,176	NCBI	Rnor6.0
Rnor_5.0	7	95,339,810 - 95,339,939	UniSTS	Rnor5.0
RGSC_v3.4	7	91,542,460 - 91,542,589	UniSTS	RGSC3.4
Celera	7	83,217,006 - 83,217,135	UniSTS
RH 3.4 Map	7	600.2	UniSTS
Cytogenetic Map	7	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_133319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006241644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB072351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000040836 ⟹ ENSRNOP00000050750

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	88,312,374 - 88,369,377 (-)	Ensembl
mRatBN7.2 Ensembl	7	86,422,613 - 86,479,616 (-)	Ensembl
Rnor_6.0 Ensembl	7	94,698,987 - 94,755,924 (-)	Ensembl

RefSeq Acc Id:

NM_133319 ⟹ NP_579853

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	88,312,374 - 88,369,377 (-)	NCBI
mRatBN7.2	7	86,422,613 - 86,479,616 (-)	NCBI
Rnor_6.0	7	94,698,987 - 94,755,924 (-)	NCBI
Rnor_5.0	7	95,339,750 - 95,396,754 (-)	NCBI
RGSC_v3.4	7	91,542,400 - 91,599,759 (-)	RGD
Celera	7	83,216,946 - 83,273,562 (-)	RGD

Sequence:

show sequence

GCAAGATGTCGGCAGGCGGCGTCTGTGGCTTTGAGCTCCTGTAAAGCGGCTCATCTGTGTGACA
GGGTTAGGGCGTAGGAGACTGAGAGTGGCCAGGGGAGGGGACACGAGGCGGAGGAAGGGTGGCT
GGGCCCTCAGAGTGCACAGGCCGCTACCGGGAATGCGCTGCAGCCTCCGGAGCAGCCTGAAAGG
CGAGCCCCGCAGGAGCTCTTCATGCCGCCCACCGGCTTAGAGTCCTCCAGGATGAACAGGAAGA
AAGGAGACAAGGGCTTCGAAAGCCCACGGCCGTACAAATTAACCCATCAGGTCGTCTGCATCAA
CAACATAAACTTCCAGAGAAAGTCTGTTGTGGGGTTTGTGGAGCTGACTATATTTCCTACGGTT
GCAAACTTGAATAGAATCAAGCTGAACAGTAAACAGTGTAGAATATACCGAGTCAGGATCAATG
ACTTGGAGGCTGCTTTTATTTATAATGATCCAACCTTAGAAGTTTGTCACAGCGAATCAAAACA
GAGAAACCTCAATTATTTTTCCAATGCGTATGCAGCTGCAGTCAGTGCTGTGGACCCTGATGCG
GGGAACGGAGAACTCTGCATTAAGGTCCCCTCAGAGCTCTGGAAGCACGTCGATGAGTTAAAGG
TCCTGAAGATACATATTAATTTTTCTTTGGATCAGCCAAAAGGAGGTCTTCATTTTGTGGTACC
CAGTGTAGAGGGGAGTATGGCAGAGAGAGGTGCTCATGTCTTCTCTTGTGGGTATCAGAATTCT
ACAAGATTTTGGTTCCCTTGTGTTGATTCATACTCTGAGTTGTGTACCTGGAAATTAGAATTTA
CAGTCGATGCTGCGATGGTGGCTGTGTCCAATGGAGATTTGGTGGAGACAGTGTATACTCACGA
CATGAGAAAGAAGACCTTCCATTATGTGCTTGCTATTCCTACAGCAGCGTCCAATATCTCCTTG
GCCATCGGGCCATTTGAAATACTTGTAGATCCATATATGCACGAGGTTACCCATTTTTGTTTGC
CTCAACTTCTTCCATTACTTAAACATACTACATCATACCTTCACGAAGTTTTTGAATTTTATGA
GGAAATTTTGACTTGTCGCTATCCGTACTCCTGTTTTAAGACGGTCTTCATTGATGAGGCTTAC
GTGGAAGTGGCCGCTTATGCGTCTATGAGCATTTTCAGCACAAATCTCCTGCACAGCGCCATGA
TTATAGATGAGACACCGCTCACCAGGCGGTGCCTCGCACAGTCTCTAGCACAGCAGTTCTTCGG
ATGTTTCATCTCCAGAATGTCTTGGTCTGATGAGTGGGTGCTGAAGGGAATTTCAGGTTATATT
TATGGACTGTGGATGAAGAAAACGTTTGGTGTCAATGAGTACCACCATTGGATTAAAGAGGAAC
TCGATAAAATAGTGGCATATGAACTGAAAACTGGGGGAGTTTTACTGCATCCCATATTTGGTGG
TGGAAAAGAAAAGGATAACCCCGCATCTCACCTCCACTTTTCAATAAAGCATCCACATACACTG
TCTTGGGAATACTACACTATGTTTCAGTGTAAAGCTCACCTCGTGATGAGACTGATTGAAAACA
GAATCAGCATGGAATTTATGCTGCAAGTTTTCAATAAACTATTAAGTCTGGCCAGTACCGCTTC
ATCCCAGAAGTTCCAGTCACATATGTGGAGCCAGATGCTGGTCTCCACCTACGGGTTTTTGAAG
TCCATTTCCAATGTCTCTGGCAAAGACATCCAGCCCTTAATAAAGCAGTGGGTAGACCAGAGTG
GAGTGGTAAAGTTTTATGGAAGTTTTGCATTTAATAGAAAACGAAATGTTTTAGAACTAGAAAT
AAAACAAGATTACACATCTCCTGGCACCCAGAAGTACGTGGGACCACTTAAAGTGACAGTGCAA
GAGTTAGACGGCTCCTTCAACCATACCTTGCAAATTGAAGAAAACAGCCTTAAACATGACATAC
CCTGCCACTCCAAAAGCAGAAGGAATAAGAAGAAGAAAATCCCACTGATGAATGGGGAAGAAGT
CGATATGGATCTTTCTGCAATGGATGCGGACTCCCCTTTGCTGTGGATAAGGATAGACCCAGAT
ATGTCTGTCCTGAGGAAGGTGGAGTTTGAGCAGGCTGACTTTATGTGGCAGTATGAGCTCCGCT
ATGAGAGAGATGTTGTTGCTCAGCAGGAATCCATCTTGGCCTTGGAAAAGTTCCCCACGCCCGC
ATCGCGCCTCGCGCTCACTGATATACTAGAGCAAGAGCAGTGTTTCTACCGAGTGAGGATGTCA
GCATGCTTCTGCCTTGCAAAGATTGCAAACTCAATGGTGAGCACATGGACGGGACCACCAGCCA
TGAAGTCCCTCTTTACTAGAATGTTTTGTTGTAAAACTTGTCCCAACATCGTGAAAACAAACAA
CTTCATGAGCTTTCAGAGTTATTTTCTACAGAAGACTATGCCAGTTGCAATGGCTTTGTTAAGA
GACGTACATAATCTTTGTCCCAAAGAAGTTTTAACATTTATTTTAGACTTAATCAAGTACAATG
ACAACAGAAAAAATAAGTTTTCAGATAACTATTACCGTGCAGAAATGATTGATGCCTTGGCTAA
CTCTGTCACACCTGCTGTCAGCGTGAATAATGAAGTCAGAACTTTGGATAACTTAAATCCTGAT
GTGCGACTAATACTTGAAGAAATTACCCGGTTTTTGAATATGGAAAAACTTCTCCCAAGTTACA
GACATACTATCACTGTCAGTTGTTTGAGAGCCATAAGAGTGCTTCAGAAGAATGGACATGTGCC
AAGTGATGCATCTCTTTTCAAATCCTATGCTGAGTATGGCCACTTCGTGGACATCAGGATAGCG
GCTCTGGAAGCCGTCGTCGATTACACCAAAGTGGACAGGAGTTATGAAGAACTTCAATGGCTAC
TTAATATGATTCAGACTGACCCTGTCCCCTATGTGAGGCATAAGATTCTAAACATGCTGACTAA
AAATCCGCCATTTACAAAGAACATGGAGTCTCCTTTATGCAACGAGGCCTTGGTAGATCAGCTC
TGGAAGCTGATGAATTCTGGTACTGCACATGACTGGAGGTTACGGTGTGGAGCTGTGGACTTGT
ACTTCACGCTCTTTGGCCTCAGTAGACCTTCTTGTTTACCCTTGCCAGAGCTCGGGCTTGTTCT
TAACCTAAAAGAGAAGAAAGCTGTCTTGAATCCAACCATAATTCCAGAAGCGGGAGTAGGCAAT
CAGGAAACTGCAAGTAACCCAGGCTGTCACACTCAGCTAGCAGGATTTCAGAACCCTTTCTCAA
GTTCTCAGGATGAGGAGGAGGTCGATATGGACACCGTTCATGATAGTCAGGCCTTCATTTCCCA
TCATCTGAACATGCTTGAAAGGCCGTCCACTCCAGGGCTCTCTAAGTACCGACCATCCAGCTCC
AGGTCTTCCTTAATGCCCCAGCATGCATTAGGCTGTGACATCACACCAACCACAAAACCCCAGT
GGAGTATGGAACTGTCCCGAAAGGGAGCAGGTAAAGAGCAGCCTTTGGAGATGGGTGTGCATCC
CGTGGCGGCCCCGCTCTCCGTGTTTGCTAAGGAGGCTCTGTCCTCTGCCCGGCACAGCGAGCAC
CACCACCACCATCACCATGAGCACAAGAAGAAGAAGAAGAAGCACAAACACAAGCACAAGCACA
AGCACAAGCATGACGGCAAGGACAAGGACAAGGACAAGGAGCCCTTCACCTTCTCCAGCCCTGC
CAGTGGCAGGTCTGTGCGCTCCCCTTCACTCTCAGACTGAAGCCTGCTCCACAGTCCTCTGTGC
AGAGACACAGCAGGGACTATGGCGAGGCTGAAGAGGATGCTTGAAGTCCCCATTTGACGGCTGT
GTTTGTATAACTGGGATTTAAATAGGAATGAGTGTTTTGGTTTTGGAGGAACTGTTCCACCCCC
AGTTCTTCCTGAAAACAGAGCGACTGTTTATAAAAGCCTTCGTATCCACTGCAGGCCTCTTTAG
ATGTTGGTCTCCTATGGACTGCCAAAGTCAGGTGTGCTTGACAGCCTTGGATGGACAGAAGGAC
ATTGTCAGCAGAAGCAACTGCCCGATCTGTGGTAGCCAGCGTTTCCATGAAGTGCTAAACAGCA
CCACTTGCAATTGCTGGAGAGAGGCTTTTCTGTAGGGCCCAATCCCTCTCGACTGCTTTTTGTG
TTAGCCATTGAAACTAAGCACCATCATTTATGAGCGAAGAATCCTATAGTTCTTTTTACCCTAA
AATATAAAAAGTTTTGAAAGAAATTATTTTTTAAACAATTTAAAGTAACTATCTTTTGATAGTA
CATTTGGTGATTATGATATTGCAATGTAGCAGATCCAACATTATTCTCAAATCAAGATGTTAAA
TTATGTTTTGTTTTGTCTTCCATTAAATGCAGGTGAATGTGTTCAGATGTAAAATATGTTTTGC
TGAATGTGGACAGTTTATACACATAACACATATTCTCTCTGAAATGACTCTGTATATAAGGCAG
GTGTGGTTGTGCATGCCTGTAATTCCAGCAGTTGGGAGATAGAGGTCAGGATCATTCAAGGCCT
GCCTGACACACATGAAAATCTGTATCACAAAAGCAAAATGACAAAGTCACTCTACATAACAAAA
CATGATACTTTGAAAAAGTGTCTTTATTTATTGTTTCCTAGCTTGGTCACAGCTGATTTGGCCC
ACACTGGAGTAGACCAGCAGCAGTTTAAATAAACACACGTGCCATGCTTTGGGTTCATAGTTTA
ACAGTTTGTGTGGTTGTATGTTTTGGTTTTGTTTTTTGGCTTTTGATTTTCTGAATTTCCCAGG
TTCTGGTGTTAAAAAATATTTTCATATTATTCAGTTTTATCATTTCTTTTGTTACTAAATGTTT
GACTCAATTCTTGATCTCAGAATAAATATTTCAAAAGGGATTCAACAATGCTGGACTTTTAAAT
GTACTTTTAGTTGTATTTAACTTGTTTAGTAAATAACTTTTTTAAGTCTG

hide sequence

RefSeq Acc Id:

XM_006241644 ⟹ XP_006241706

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	88,312,374 - 88,362,511 (-)	NCBI
mRatBN7.2	7	86,422,618 - 86,472,750 (-)	NCBI
Rnor_6.0	7	94,698,987 - 94,749,023 (-)	NCBI
Rnor_5.0	7	95,339,750 - 95,396,754 (-)	NCBI

Sequence:

show sequence

GCAGCTGCAGTCAGTGCTGTGGACCCTGATGCGGGGAACGGAGAACTCTGCATTAAGGTCCCCT
CAGAGCTCTGGAAGCACGTCGATGATTTTGGTTCCCTTGTGTTGATTCATACTCTGAGTTGTGT
ACCTGGAAATTAGAATTTACAGTCGATGCTGCGATGGTGGCTGTGTCCAATGGAGATTTGGTGG
AGACAGTGTATACTCACGACATGAGAAAGAAGACCTTCCATTATGTGCTTGCTATTCCTACAGC
AGCGTCCAATATCTCCTTGGCCATCGGGCCATTTGAAATACTTGTAGATCCATATATGCACGAG
GTTACCCATTTTTGTTTGCCTCAACTTCTTCCATTACTTAAACATACTACATCATACCTTCACG
AAGTTTTTGAATTTTATGAGGAAATTTTGACTTGTCGCTATCCGTACTCCTGTTTTAAGACGGT
CTTCATTGATGAGGCTTACGTGGAAGTGGCCGCTTATGCGTCTATGAGCATTTTCAGCACAAAT
CTCCTGCACAGCGCCATGATTATAGATGAGACACCGCTCACCAGGCGGTGCCTCGCACAGTCTC
TAGCACAGCAGTTCTTCGGATGTTTCATCTCCAGAATGTCTTGGTCTGATGAGTGGGTGCTGAA
GGGAATTTCAGGTTATATTTATGGACTGTGGATGAAGAAAACGTTTGGTGTCAATGAGTACCAC
CATTGGATTAAAGAGGAACTCGATAAAATAGTGGCATATGAACTGAAAACTGGGGGAGTTTTAC
TGCATCCCATATTTGGTGGTGGAAAAGAAAAGGATAACCCCGCATCTCACCTCCACTTTTCAAT
AAAGCATCCACATACACTGTCTTGGGAATACTACACTATGTTTCAGTGTAAAGCTCACCTCGTG
ATGAGACTGATTGAAAACAGAATCAGCATGGAATTTATGCTGCAAGTTTTCAATAAACTATTAA
GTCTGGCCAGTACCGCTTCATCCCAGAAGTTCCAGTCACATATGTGGAGCCAGATGCTGGTCTC
CACCTACGGGTTTTTGAAGTCCATTTCCAATGTCTCTGGCAAAGACATCCAGCCCTTAATAAAG
CAGTGGGTAGACCAGAGTGGAGTGGTAAAGTTTTATGGAAGTTTTGCATTTAATAGAAAACGAA
ATGTTTTAGAACTAGAAATAAAACAAGATTACACATCTCCTGGCACCCAGAAGTACGTGGGACC
ACTTAAAGTGACAGTGCAAGAGTTAGACGGCTCCTTCAACCATACCTTGCAAATTGAAGAAAAC
AGCCTTAAACATGACATACCCTGCCACTCCAAAAGCAGAAGGAATAAGAAGAAGAAAATCCCAC
TGATGAATGGGGAAGAAGTCGATATGGATCTTTCTGCAATGGATGCGGACTCCCCTTTGCTGTG
GATAAGGATAGACCCAGATATGTCTGTCCTGAGGAAGGTGGAGTTTGAGCAGGCTGACTTTATG
TGGCAGTATGAGCTCCGCTATGAGAGAGATGTTGTTGCTCAGCAGGAATCCATCTTGGCCTTGG
AAAAGTTCCCCACGCCCGCATCGCGCCTCGCGCTCACTGATATACTAGAGCAAGAGCAGTGTTT
CTACCGAGTGAGGATGTCAGCATGCTTCTGCCTTGCAAAGATTGCAAACTCAATGGTGAGCACA
TGGACGGGACCACCAGCCATGAAGTCCCTCTTTACTAGAATGTTTTGTTGTAAAACTTGTCCCA
ACATCGTGAAAACAAACAACTTCATGAGCTTTCAGAGTTATTTTCTACAGAAGACTATGCCAGT
TGCAATGGCTTTGTTAAGAGACGTACATAATCTTTGTCCCAAAGAAGTTTTAACATTTATTTTA
GACTTAATCAAGTACAATGACAACAGAAAAAATAAGTTTTCAGATAACTATTACCGTGCAGAAA
TGATTGATGCCTTGGCTAACTCTGTCACACCTGCTGTCAGCGTGAATAATGAAGTCAGAACTTT
GGATAACTTAAATCCTGATGTGCGACTAATACTTGAAGAAATTACCCGGTTTTTGAATATGGAA
AAACTTCTCCCAAGTTACAGACATACTATCACTGTCAGTTGTTTGAGAGCCATAAGAGTGCTTC
AGAAGAATGGACATGTGCCAAGTGATGCATCTCTTTTCAAATCCTATGCTGAGTATGGCCACTT
CGTGGACATCAGGATAGCGGCTCTGGAAGCCGTCGTCGATTACACCAAAGTGGACAGGAGTTAT
GAAGAACTTCAATGGCTACTTAATATGATTCAGACTGACCCTGTCCCCTATGTGAGGCATAAGA
TTCTAAACATGCTGACTAAAAATCCGCCATTTACAAAGAACATGGAGTCTCCTTTATGCAACGA
GGCCTTGGTAGATCAGCTCTGGAAGCTGATGAATTCTGGTACTGCACATGACTGGAGGTTACGG
TGTGGAGCTGTGGACTTGTACTTCACGCTCTTTGGCCTCAGTAGACCTTCTTGTTTACCCTTGC
CAGAGCTCGGGCTTGTTCTTAACCTAAAAGAGAAGAAAGCTGTCTTGAATCCAACCATAATTCC
AGAAGCGGGAGTAGGCAATCAGGAAACTGCAAGTAACCCAGGCTGTCACACTCAGCTAGCAGGA
TTTCAGAACCCTTTCTCAAGTTCTCAGGATGAGGAGGAGGTCGATATGGACACCGTTCATGATA
GTCAGGCCTTCATTTCCCATCATCTGAACATGCTTGAAAGGCCGTCCACTCCAGGGCTCTCTAA
GTACCGACCATCCAGCTCCAGGTCTTCCTTAATGCCCCAGCATGCATTAGGCTGTGACATCACA
CCAACCACAAAACCCCAGTGGAGTATGGAACTGTCCCGAAAGGGAGCAGGTAAAGAGCAGCCTT
TGGAGATGGGTGTGCATCCCGTGGCGGCCCCGCTCTCCGTGTTTGCTAAGGAGGCTCTGTCCTC
TGCCCGGCACAGCGAGCACCACCACCACCATCACCATGAGCACAAGAAGAAGAAGAAGAAGCAC
AAACACAAGCACAAGCACAAGCACAAGCATGACGGCAAGGACAAGGACAAGGACAAGGAGCCCT
TCACCTTCTCCAGCCCTGCCAGTGGCAGGTCTGTGCGCTCCCCTTCACTCTCAGACTGAAGCCT
GCTCCACAGTCCTCTGTGCAGAGACACAGCAGGGACTATGGCGAGGCTGAAGAGGATGCTTGAA
GTCCCCATTTGACGGCTGTGTTTGTATAACTGGGATTTAAATAGGAATGAGTGTTTTGGTTTTG
GAGGAACTGTTCCACCCCCAGTTCTTCCTGAAAACAGAGCGACTGTTTATAAAAGCCTTCGTAT
CCACTGCAGGCCTCTTTAGATGTTGGTCTCCTATGGACTGCCAAAGTCAGGTGTGCTTGACAGC
CTTGGATGGACAGAAGGACATTGTCAGCAGAAGCAACTGCCCGATCTGTGGTAGCCAGCGTTTC
CATGAAGTGCTAAACAGCACCACTTGCAATTGCTGGAGAGAGGCTTTTCTGTAGGGCCCAATCC
CTCTCGACTGCTTTTTGTGTTAGCCATTGAAACTAAGCACCATCATTTATGAGCGAAGAATCCT
ATAGTTCTTTTTACCCTAAAATATAAAAAGTTTTGAAAGAAATTATTTTTTAAACAATTTAAAG
TAACTATCTTTTGATAGTACATTTGGTGATTATGATATTGCAATGTAGCAGATCCAACATTATT
CTCAAATCAAGATGTTAAATTATGTTTTGTTTTGTCTTCCATTAAATGCAGGTGAATGTGTTCA
GATGTAAAATATGTTTTGCTGAATGTGGACAGTTTATACACATAACACATATTCTCTCTGAAAT
GACTCTGTATATAAGGCAGGTGTGGTTGTGCATGCCTGTAATTCCAGCAGTTGGGAGATAGAGG
TCAGGATCATTCAAGGCCTGCCTGACACACATGAAAATCTGTATCACAAAAGCAAAATGACAAA
GTCACTCTACATAACAAAACATGATACTTTGAAAAAGTGTCTTTATTTATTGTTTCCTAGCTTG
GTCACAGCTGATTTGGCCCACACTGGAGTAGACCAGCAGCAGTTTAAATAAACACACGTGCCAT
GCTTTGGGTTCATAGTTTAACAGTTTGTGTGGTTGTATGTTTTGGTTTTGTTTTTTGGCTTTTG
ATTTTCTGAATTTCCCAGGTTCTGGTGTTAAAAAATATTTTCATATTATTCAGTTTTATCATTT
CTTTTGTTACTAAATGTTTGACTCAATTCTTGATCTCAGAATAAATATTTCAAAAGGGATTCAA
CAATGCTGGACTTTTAAATGTACTTTTAGTTGTATTTAACTTGTTTAGTAAATAACTTTTTTAA
GTCTG

hide sequence

RefSeq Acc Id:

XM_063262942 ⟹ XP_063119012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	88,312,374 - 88,369,398 (-)	NCBI

RefSeq Acc Id:

XR_010052933

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	88,328,176 - 88,369,399 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_579853	(Get FASTA)	NCBI Sequence Viewer
	XP_006241706	(Get FASTA)	NCBI Sequence Viewer
	XP_063119012	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91307	(Get FASTA)	NCBI Sequence Viewer
	AAI05766	(Get FASTA)	NCBI Sequence Viewer
	BAB68551	(Get FASTA)	NCBI Sequence Viewer
	EDM16255	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050750
	ENSRNOP00000050750.3

RefSeq Acc Id:

NP_579853 ⟸ NM_133319

- UniProtKB:

F1LNY6 (UniProtKB/TrEMBL), A6HRG7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPPTGLESSRMNRKKGDKGFESPRPYKLTHQVVCINNINFQRKSVVGFVELTIFPTVANLNRIK
LNSKQCRIYRVRINDLEAAFIYNDPTLEVCHSESKQRNLNYFSNAYAAAVSAVDPDAGNGELCI
KVPSELWKHVDELKVLKIHINFSLDQPKGGLHFVVPSVEGSMAERGAHVFSCGYQNSTRFWFPC
VDSYSELCTWKLEFTVDAAMVAVSNGDLVETVYTHDMRKKTFHYVLAIPTAASNISLAIGPFEI
LVDPYMHEVTHFCLPQLLPLLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYA
SMSIFSTNLLHSAMIIDETPLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKK
TFGVNEYHHWIKEELDKIVAYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTM
FQCKAHLVMRLIENRISMEFMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTYGFLKSISNVSG
KDIQPLIKQWVDQSGVVKFYGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFN
HTLQIEENSLKHDIPCHSKSRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMSVLRKV
EFEQADFMWQYELRYERDVVAQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACFCLAK
IANSMVSTWTGPPAMKSLFTRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCP
KEVLTFILDLIKYNDNRKNKFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEE
ITRFLNMEKLLPSYRHTITVSCLRAIRVLQKNGHVPSDASLFKSYAEYGHFVDIRIAALEAVVD
YTKVDRSYEELQWLLNMIQTDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSG
TAHDWRLRCGAVDLYFTLFGLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAGVGNQETASNP
GCHTQLAGFQNPFSSSQDEEEVDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPSSSRSSLMPQ
HALGCDITPTTKPQWSMELSRKGAGKEQPLEMGVHPVAAPLSVFAKEALSSARHSEHHHHHHHE
HKKKKKKHKHKHKHKHKHDGKDKDKDKEPFTFSSPASGRSVRSPSLSD

hide sequence

RefSeq Acc Id:	XP_006241706 ⟸ XM_006241644
- Peptide Label:	isoform X2
- UniProtKB:	A6HRG7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVAVSNGDLVETVYTHDMRKKTFHYVLAIPTAASNISLAIGPFEILVDPYMHEVTHFCLPQLLP LLKHTTSYLHEVFEFYEEILTCRYPYSCFKTVFIDEAYVEVAAYASMSIFSTNLLHSAMIIDET PLTRRCLAQSLAQQFFGCFISRMSWSDEWVLKGISGYIYGLWMKKTFGVNEYHHWIKEELDKIV AYELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRISME FMLQVFNKLLSLASTASSQKFQSHMWSQMLVSTYGFLKSISNVSGKDIQPLIKQWVDQSGVVKF YGSFAFNRKRNVLELEIKQDYTSPGTQKYVGPLKVTVQELDGSFNHTLQIEENSLKHDIPCHSK SRRNKKKKIPLMNGEEVDMDLSAMDADSPLLWIRIDPDMSVLRKVEFEQADFMWQYELRYERDV VAQQESILALEKFPTPASRLALTDILEQEQCFYRVRMSACFCLAKIANSMVSTWTGPPAMKSLF TRMFCCKTCPNIVKTNNFMSFQSYFLQKTMPVAMALLRDVHNLCPKEVLTFILDLIKYNDNRKN KFSDNYYRAEMIDALANSVTPAVSVNNEVRTLDNLNPDVRLILEEITRFLNMEKLLPSYRHTIT VSCLRAIRVLQKNGHVPSDASLFKSYAEYGHFVDIRIAALEAVVDYTKVDRSYEELQWLLNMIQ TDPVPYVRHKILNMLTKNPPFTKNMESPLCNEALVDQLWKLMNSGTAHDWRLRCGAVDLYFTLF GLSRPSCLPLPELGLVLNLKEKKAVLNPTIIPEAGVGNQETASNPGCHTQLAGFQNPFSSSQDE EEVDMDTVHDSQAFISHHLNMLERPSTPGLSKYRPSSSRSSLMPQHALGCDITPTTKPQWSMEL SRKGAGKEQPLEMGVHPVAAPLSVFAKEALSSARHSEHHHHHHHEHKKKKKKHKHKHKHKHKHD GKDKDKDKEPFTFSSPASGRSVRSPSLSD hide sequence

Ensembl Acc Id:

ENSRNOP00000050750 ⟸ ENSRNOT00000040836

RefSeq Acc Id:	XP_063119012 ⟸ XM_063262942
- Peptide Label:	isoform X1
- UniProtKB:	F1LNY6 (UniProtKB/TrEMBL), A6HRG7 (UniProtKB/TrEMBL)

Protein Domains

Transcription initiation factor TFIID subunit 2 Ig-

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LNY6-F1-model_v2	AlphaFold	F1LNY6	1-1200	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695332

Promoter ID:

EPDNEW_R5857

Type:

multiple initiation site

Name:

Taf2_1

Description:

TATA-box binding protein associated factor 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	94,755,935 - 94,755,995	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621487	AgrOrtholog
BioCyc Gene	G2FUF-33384	BioCyc
Ensembl Genes	ENSRNOG00000034022	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000040836	ENTREZGENE
	ENSRNOT00000040836.5	UniProtKB/TrEMBL
Gene3D-CATH	1.10.390.10	UniProtKB/TrEMBL
	2.60.40.1730	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7311358	IMAGE-MGC_LOAD
	IMAGE:7929644	IMAGE-MGC_LOAD
InterPro	Aminopeptidase_N-like_N	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Peptidase_M4/M1_CTD_sf	UniProtKB/TrEMBL
	TAF2	UniProtKB/TrEMBL
	TAF2_Ig-like	UniProtKB/TrEMBL
KEGG Report	rno:170844	UniProtKB/TrEMBL
MGC_CLONE	MGC:109257	IMAGE-MGC_LOAD
	MGC:124871	IMAGE-MGC_LOAD
NCBI Gene	170844	ENTREZGENE
PANTHER	PTHR15137	UniProtKB/TrEMBL
	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2	UniProtKB/TrEMBL
Pfam	TAF2_3rd	UniProtKB/TrEMBL
	TPR_TAF2_C	UniProtKB/TrEMBL
PhenoGen	Taf2	PhenoGen
RatGTEx	ENSRNOG00000034022	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
	Metalloproteases ('zincins'), catalytic domain	UniProtKB/TrEMBL
	SSF63737	UniProtKB/TrEMBL
UniProt	A6HRG7	ENTREZGENE, UniProtKB/TrEMBL
	F1LNY6	ENTREZGENE, UniProtKB/TrEMBL
	Q3KRD7_RAT	UniProtKB/TrEMBL
	Q5BJV8_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-16	Taf2	TATA-box binding protein associated factor 2	Taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-06-27			Taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor		TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150 kD	Name updated	1299863	APPROVED
2002-08-07	Taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150 kD			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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