Atp6v0e1 (ATPase H+ transporting V0 subunit e1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Atp6v0e1 (ATPase H+ transporting V0 subunit e1) Rattus norvegicus
Analyze
Symbol: Atp6v0e1
Name: ATPase H+ transporting V0 subunit e1
RGD ID: 621393
Description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in response to amino acid. Predicted to be located in membrane. Predicted to be part of proton-transporting V-type ATPase complex. Orthologous to human ATP6V0E1 (ATPase H+ transporting V0 subunit e1); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Atp6k; Atp6v0e; ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1; ATPase, H+ transporting, lysosomal V0 subunit E1; ATPase, H+ transporting, lysosomal, V0 subunit e1; ATPase, H+ transporting, V0 subunit; ATPase, H+ transporting, V0 subunit E; ATPase, H+ transporting, V0 subunit E isoform 1; D-serine-regulated transcript 1 protein; dsr-1; Dsr-1A; V-ATPase 9.2 kDa membrane accessory protein; V-ATPase M9.2 subunit; V-ATPase subunit e 1; V-type proton ATPase subunit e 1; vacuolar proton pump subunit e 1; vacuolar proton-ATPase subunit M9.2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,984,084 - 17,007,156 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1016,984,084 - 17,028,858 (-)EnsemblGRCr8
mRatBN7.21016,479,656 - 16,502,732 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,479,567 - 16,524,434 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1021,229,547 - 21,252,658 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,718,119 - 20,741,226 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,207,894 - 16,230,961 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,769,857 - 16,792,930 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,769,666 - 16,792,909 (-)Ensemblrn6Rnor6.0
Rnor_5.01016,661,968 - 16,685,040 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41016,741,507 - 16,764,579 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1016,138,176 - 16,161,412 (-)NCBICelera
RGSC_v3.11016,742,555 - 16,765,628 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic profiling of brain cortex tissues in a Tau transgenic mouse model of Alzheimer's disease. Chang SH, etal., Biochem Biophys Res Commun. 2013 Jan 11;430(2):670-5. doi: 10.1016/j.bbrc.2012.11.093. Epub 2012 Dec 2.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Cloning of a D-serine-regulated transcript dsr-1 from the rat cerebral cortex. Tsuchida H, etal., Biochem Biophys Res Commun 2001 Feb 2;280(4):1189-96.
Additional References at PubMed
PMID:17350184  


Genomics

Comparative Map Data
Atp6v0e1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81016,984,084 - 17,007,156 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1016,984,084 - 17,028,858 (-)EnsemblGRCr8
mRatBN7.21016,479,656 - 16,502,732 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1016,479,567 - 16,524,434 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1021,229,547 - 21,252,658 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01020,718,119 - 20,741,226 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01016,207,894 - 16,230,961 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01016,769,857 - 16,792,930 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1016,769,666 - 16,792,909 (-)Ensemblrn6Rnor6.0
Rnor_5.01016,661,968 - 16,685,040 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41016,741,507 - 16,764,579 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1016,138,176 - 16,161,412 (-)NCBICelera
RGSC_v3.11016,742,555 - 16,765,628 (-)NCBI
Cytogenetic Map10q12NCBI
ATP6V0E1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385172,983,771 - 173,035,445 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5172,983,771 - 173,035,445 (+)Ensemblhg38GRCh38
GRCh375172,410,774 - 172,462,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365172,343,369 - 172,394,506 (+)NCBIBuild 36Build 36hg18NCBI36
Build 345172,343,368 - 172,394,506NCBI
Celera5168,443,924 - 168,495,366 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5167,505,479 - 167,556,521 (+)NCBIHuRef
CHM1_15171,843,454 - 171,894,641 (+)NCBICHM1_1
T2T-CHM13v2.05173,523,874 - 173,575,550 (+)NCBIT2T-CHM13v2.0
Atp6v0e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,895,370 - 26,918,621 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,882,205 - 26,918,621 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381726,676,396 - 26,699,647 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,663,231 - 26,699,647 (+)Ensemblmm10GRCm38
MGSCv371726,813,341 - 26,836,592 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361726,403,996 - 26,427,237 (+)NCBIMGSCv36mm8
Celera1727,212,703 - 27,236,263 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.46NCBI
Atp6v0e1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540825,667,703 - 25,703,550 (+)Ensembl
ChiLan1.0NW_00495540825,667,703 - 25,703,550 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0E1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24168,122,157 - 168,173,543 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15166,261,700 - 166,313,085 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05168,336,845 - 168,388,230 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15175,246,088 - 175,297,288 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5175,246,088 - 175,297,289 (+)EnsemblpanPan2panpan1.1
ATP6V0E1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1439,378,007 - 39,409,968 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl439,378,004 - 39,409,981 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha439,323,465 - 39,355,356 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0439,749,010 - 39,780,983 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl439,749,007 - 39,780,996 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1439,565,769 - 39,597,687 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0439,755,511 - 39,787,428 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0440,264,617 - 40,296,553 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Atp6v0e1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721393,787,496 - 93,811,256 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366092,510,182 - 2,533,925 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366092,510,178 - 2,533,934 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0E1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11651,225,719 - 51,260,712 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21655,538,813 - 55,574,011 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap16qNCBI
ATP6V0E1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12375,149,843 - 75,199,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2375,149,710 - 75,200,192 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660343,412,129 - 3,462,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp6v0e1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473317,032,011 - 17,070,152 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473317,032,792 - 17,069,319 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Atp6v0e1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v194,750,734 - 4,773,340 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Atp6v0e1
337 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:77
Count of miRNA genes:65
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000004653
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101576223019737486Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
2298495Eae23Experimental allergic encephalomyelitis QTL 2316.93nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)101617552561175525Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
D10Rat121  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81017,001,517 - 17,001,698 (+)Marker Load Pipeline
mRatBN7.21016,497,093 - 16,497,274 (+)MAPPERmRatBN7.2
Rnor_6.01016,787,292 - 16,787,472NCBIRnor6.0
Rnor_5.01016,679,402 - 16,679,582UniSTSRnor5.0
RGSC_v3.41016,758,940 - 16,759,121RGDRGSC3.4
RGSC_v3.41016,758,941 - 16,759,121UniSTSRGSC3.4
Celera1016,155,774 - 16,155,954UniSTS
RGSC_v3.11016,759,990 - 16,760,170RGD
RH 3.4 Map10151.36UniSTS
RH 3.4 Map10151.36RGD
RH 2.0 Map10155.7RGD
SHRSP x BN Map109.18RGD
Cytogenetic Map10q12UniSTS
RH128105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2534,878,052 - 34,878,251 (+)MAPPERmRatBN7.2
mRatBN7.21016,479,853 - 16,480,054 (+)MAPPERmRatBN7.2
Rnor_6.01016,770,055 - 16,770,255NCBIRnor6.0
Rnor_6.0535,403,375 - 35,403,573NCBIRnor6.0
Rnor_5.01016,662,166 - 16,662,366UniSTSRnor5.0
Rnor_5.0540,054,257 - 40,054,455UniSTSRnor5.0
RGSC_v3.4536,065,164 - 36,065,362UniSTSRGSC3.4
RGSC_v3.41016,741,705 - 16,741,905UniSTSRGSC3.4
Celera1016,138,374 - 16,138,574UniSTS
Celera533,912,033 - 33,912,231UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000004653   ⟹   ENSRNOP00000004653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1016,984,084 - 17,028,858 (-)Ensembl
mRatBN7.2 Ensembl1016,479,567 - 16,524,434 (-)Ensembl
Rnor_6.0 Ensembl1016,769,666 - 16,792,909 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077386   ⟹   ENSRNOP00000071366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1016,984,084 - 17,007,348 (-)Ensembl
mRatBN7.2 Ensembl1016,479,567 - 16,502,924 (-)Ensembl
Rnor_6.0 Ensembl1016,769,857 - 16,788,126 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097009   ⟹   ENSRNOP00000080976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1016,984,084 - 17,007,156 (-)Ensembl
mRatBN7.2 Ensembl1016,494,784 - 16,502,732 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097424   ⟹   ENSRNOP00000084350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1016,984,084 - 17,001,603 (-)Ensembl
mRatBN7.2 Ensembl1016,479,656 - 16,497,179 (-)Ensembl
RefSeq Acc Id: NM_053578   ⟹   NP_446030
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81016,984,084 - 17,007,156 (-)NCBI
mRatBN7.21016,479,656 - 16,502,732 (-)NCBI
Rnor_6.01016,769,857 - 16,792,930 (-)NCBI
Rnor_5.01016,661,968 - 16,685,040 (-)NCBI
RGSC_v3.41016,741,507 - 16,764,579 (-)RGD
Celera1016,138,176 - 16,161,412 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_446030 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB32689 (Get FASTA)   NCBI Sequence Viewer  
  BAB32690 (Get FASTA)   NCBI Sequence Viewer  
  BAB32691 (Get FASTA)   NCBI Sequence Viewer  
  EDM04044 (Get FASTA)   NCBI Sequence Viewer  
  EDM04045 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000080976
GenBank Protein Q794C0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446030   ⟸   NM_053578
- UniProtKB: Q794C0 (UniProtKB/Swiss-Prot),   A6HDD9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004653   ⟸   ENSRNOT00000004653
Ensembl Acc Id: ENSRNOP00000071366   ⟸   ENSRNOT00000077386
Ensembl Acc Id: ENSRNOP00000080976   ⟸   ENSRNOT00000097009
Ensembl Acc Id: ENSRNOP00000084350   ⟸   ENSRNOT00000097424

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q794C0-F1-model_v2 AlphaFold Q794C0 1-81 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697089
Promoter ID:EPDNEW_R7613
Type:initiation region
Name:Atp6v0e1_1
Description:ATPase H+ transporting V0 subunit e1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01016,792,890 - 16,792,950EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621393 AgrOrtholog
BioCyc Gene G2FUF-25648 BioCyc
BioCyc Pathway PWY-7980 [ATP biosynthesis] BioCyc
BioCyc Pathway Image PWY-7980 BioCyc
Ensembl Genes ENSRNOG00000003269 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000097009 ENTREZGENE
InterPro ATPase_V0-cplx_e1/e2_su UniProtKB/Swiss-Prot
  ATPase_V0-cplx_e1/e2_su_met UniProtKB/Swiss-Prot
KEGG Report rno:94170 UniProtKB/Swiss-Prot
NCBI Gene 94170 ENTREZGENE
PANTHER PTHR12263 UniProtKB/Swiss-Prot
  V-TYPE PROTON ATPASE SUBUNIT E 1 UniProtKB/Swiss-Prot
Pfam ATP_synt_H UniProtKB/Swiss-Prot
PhenoGen Atp6v0e1 PhenoGen
PIRSF V-ATP_synth_e1/e2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000003269 RatGTEx
UniProt A0A0G2K0A5_RAT UniProtKB/TrEMBL
  A0A8I6G5C9_RAT UniProtKB/TrEMBL
  A0A8L2Q1V2_RAT UniProtKB/TrEMBL
  A6HDD9 ENTREZGENE, UniProtKB/TrEMBL
  Q794C0 ENTREZGENE
  Q99PU3_RAT UniProtKB/TrEMBL
  VA0E1_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-06 Atp6v0e1  ATPase H+ transporting V0 subunit e1  Atp6v0e1  ATPase, H+ transporting, lysosomal, V0 subunit e1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-04-27 Atp6v0e1  ATPase, H+ transporting, lysosomal, V0 subunit e1  Atp6v0e1  ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Atp6v0e1  ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1  Atp6v0e1  ATPase, H+ transporting, lysosomal V0 subunit E1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-27 Atp6v0e1  ATPase, H+ transporting, lysosomal V0 subunit E1  Atp6v0e  ATPase, H+ transporting, lysosomal V0 subunit E1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Atp6v0e  ATPase, H+ transporting, lysosomal V0 subunit E1  Atp6v0e1  ATPase, H+ transporting, V0 subunit E isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-05-19 Atp6v0e1  ATPase, H+ transporting, V0 subunit E isoform 1  Atp6v0e  ATPase, H+ transporting, V0 subunit  Symbol and Name updated 1299863 APPROVED
2005-01-20 Atp6v0e  ATPase, H+ transporting, V0 subunit  Atp6k  vacuolar proton-ATPase subunit M9.2  Symbol and Name updated 1299863 APPROVED
2002-08-07 Atp6k  vacuolar proton-ATPase subunit M9.2      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in brain, lung, and testis 632233