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Gene: Golph3 (golgi phosphoprotein 3) Rattus norvegicus

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Symbol:

Golph3

Name:

golgi phosphoprotein 3

RGD ID:

621226

Description:

Predicted to enable cargo adaptor activity; enzyme binding activity; and phosphatidylinositol-4-phosphate binding activity. Predicted to be involved in several processes, including Golgi vesicle transport; cell adhesion molecule production; and cellular response to rapamycin. Located in several cellular components, including cytosol; endosome; and trans-Golgi network. Orthologous to human GOLPH3 (golgi phosphoprotein 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amitrole; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

coat protein GPP34; Gmx33; golgi phosphoprotein 3 (coat-protein); trans-Golgi protein GMx33

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GOLPH3 (golgi phosphoprotein 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Golph3 (golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Golph3 (golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GOLPH3 (golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GOLPH3 (golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Golph3 (golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC110257335 (Golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GOLPH3 (golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Golph3 (golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Golph3 (golgi phosphoprotein 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Golph3 (golgi phosphoprotein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Golph3 (golgi phosphoprotein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Homo sapiens (human):	GOLPH3 (golgi phosphoprotein 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GOLPH3 (golgi phosphoprotein 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-27b3.2	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	golph3 (golgi phosphoprotein 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y47G6A.18	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VPS74	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VPS74	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	sau	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	sau	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	golph3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	golph3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	63,072,610 - 63,103,091 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	63,074,256 - 63,113,577 (+)	Ensembl				GRCr8
mRatBN7.2	2	61,348,030 - 61,376,051 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	61,348,030 - 61,376,049 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	68,477,852 - 68,505,678 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	66,598,034 - 66,625,996 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	61,599,510 - 61,627,473 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	62,360,754 - 62,388,773 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	62,360,754 - 62,388,771 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	82,299,652 - 82,327,662 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	61,789,212 - 61,817,179 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	57,320,169 - 57,348,256 (-)	NCBI		Celera
RGSC_v3.1	2	61,717,444 - 61,745,410 (+)	NCBI
Cytogenetic Map	2	q16	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

acrolein (ISO)

alpha-pinene (ISO)

amitrole (EXP)

ammonium chloride (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

doxorubicin (ISO)

enniatin (EXP)

enzyme inhibitor (ISO)

ethanol (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

furan (EXP)

gemcitabine (ISO)

gentamycin (EXP)

ivermectin (ISO)

L-methionine (ISO)

lead diacetate (EXP)

methamphetamine (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

nefazodone (EXP)

Nivalenol (ISO)

ochratoxin A (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

pirinixic acid (EXP)

silicon dioxide (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

tunicamycin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

asymmetric Golgi ribbon formation (ISO)

cell adhesion molecule production (ISO,ISS)

cell migration (ISO,ISS)

cellular response to rapamycin (ISO,ISS)

gene expression (ISO,ISS)

glycoprotein biosynthetic process (ISO,ISS)

Golgi organization (IBA,ISO,ISS)

Golgi ribbon formation (ISO)

Golgi to plasma membrane protein transport (IBA,ISO,ISS)

Golgi vesicle budding (IBA,ISO,ISS)

lamellipodium assembly (ISO,ISS)

leukocyte tethering or rolling (ISO,ISS)

negative regulation of apoptotic process (ISO)

positive regulation of protein secretion (ISO,ISS)

positive regulation of TOR signaling (ISO,ISS)

protein retention in Golgi apparatus (ISO,ISS)

protein secretion (ISO,ISS)

protein targeting to Golgi apparatus (ISO)

protein transport (IEA)

regulation of mitochondrion organization (ISO,ISS)

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (IBA)

Cellular Component

cytosol (IBA,IDA,ISO)

endosome (IDA,IEA)

Golgi apparatus (IEA,ISO)

Golgi cisterna (IBA,ISO,ISS)

Golgi cisterna membrane (IEA)

Golgi membrane (IEA)

mitochondrial intermembrane space (IEA)

mitochondrion (ISO,ISS)

plasma membrane (IDA,IEA)

trans-Golgi network (IBA,IDA,ISO)

Molecular Function

cargo adaptor activity (ISO)

enzyme binding (ISO)

lipid binding (IEA)

phosphatidylinositol-4-phosphate binding (IBA,IEA,ISO,ISS)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Information Derived from GenBank Report	RGD, Sept. 2003
7.	GMx33 associates with the trans-Golgi matrix in a dynamic manner and sorts within tubules exiting the Golgi.	Snyder CM, etal., Mol Biol Cell. 2006 Jan;17(1):511-24. Epub 2005 Oct 19.

Additional References at PubMed

PMID:11042173	PMID:11208086	PMID:12477932	PMID:16263763	PMID:18410729	PMID:19553991	PMID:19837035	PMID:23027862	PMID:23345592	PMID:23500462	PMID:24485452	PMID:24606552

Genomics

Comparative Map Data

Golph3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	63,072,610 - 63,103,091 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	63,074,256 - 63,113,577 (+)	Ensembl				GRCr8
mRatBN7.2	2	61,348,030 - 61,376,051 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	61,348,030 - 61,376,049 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	2	68,477,852 - 68,505,678 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	66,598,034 - 66,625,996 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	61,599,510 - 61,627,473 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	62,360,754 - 62,388,773 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	62,360,754 - 62,388,771 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	82,299,652 - 82,327,662 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	61,789,212 - 61,817,179 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	57,320,169 - 57,348,256 (-)	NCBI		Celera
RGSC_v3.1	2	61,717,444 - 61,745,410 (+)	NCBI
Cytogenetic Map	2	q16	NCBI

GOLPH3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	32,124,716 - 32,174,319 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	32,124,712 - 32,174,319 (-)	Ensembl			hg38	GRCh38
GRCh37	5	32,124,822 - 32,174,425 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	32,160,581 - 32,210,182 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	5	32,160,580 - 32,210,182	NCBI
Celera	5	32,006,114 - 32,055,713 (-)	NCBI		Celera
Cytogenetic Map	5	p13.3	NCBI
HuRef	5	32,091,956 - 32,141,330 (-)	NCBI		HuRef
CHM1_1	5	32,126,145 - 32,175,750 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	32,238,327 - 32,287,926 (-)	NCBI		T2T-CHM13v2.0

Golph3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	12,319,617 - 12,351,687 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	12,321,536 - 12,351,677 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	12,320,488 - 12,351,601 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	12,321,450 - 12,351,591 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	12,251,251 - 12,281,022 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	12,266,221 - 12,295,992 (+)	NCBI		MGSCv36	mm8
Celera	15	12,101,257 - 12,131,024 (+)	NCBI		Celera
Cytogenetic Map	15	A1	NCBI
cM Map	15	5.9	NCBI

Golph3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	17,980,514 - 18,017,041 (-)	Ensembl
ChiLan1.0	NW_004955426	17,980,514 - 18,017,041 (-)	NCBI	ChiLan1.0	ChiLan1.0

GOLPH3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	78,125,714 - 78,185,781 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	76,280,579 - 76,339,411 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	78,157,724 - 78,215,933 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	83,540,555 - 83,598,139 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	83,536,242 - 83,596,639 (+)	Ensembl			panPan2	panpan1.1

GOLPH3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	75,302,580 - 75,324,086 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	75,298,111 - 75,322,768 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	74,905,544 - 74,960,831 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	75,788,102 - 75,843,667 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	75,787,966 - 75,843,660 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	75,525,429 - 75,580,674 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	75,655,206 - 75,710,584 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	76,184,359 - 76,239,900 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Golph3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	222,736,224 - 222,769,529 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936518	8,602,367 - 8,635,655 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936518	8,602,367 - 8,635,665 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC110257335
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	18,367,282 - 18,416,501 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	16	18,367,264 - 18,416,496 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GOLPH3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	31,408,297 - 31,461,539 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	31,409,386 - 31,461,547 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	21,633,439 - 21,687,956 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Golph3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624759	22,361,405 - 22,399,861 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624759	22,361,447 - 22,399,861 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Golph3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	168,740,950 - 168,768,948 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Golph3
356 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	161
Count of miRNA genes:	110
Interacting mature miRNAs:	130
Transcripts:	ENSRNOT00000017276
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578777	Stresp15	Stress response QTL 15	2	0.05	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	2	61556902	106556902	Rat
6480225	Gdil1	Gastrointestinal dilation QTL 1			enteric ganglion morphology trait (VT:0001045)	length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)	2	58388201	77302351	Rat
631500	Bp99	Blood pressure QTL 99	2.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	61051883	104684275	Rat
7387318	Stl32	Serum triglyceride level QTL 32	3.2	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	24117813	69117813	Rat
10755436	Coatc8	Coat color QTL 8		0.02431	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	2	36750344	81750344	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
5684996	Bmd85	Bone mineral density QTL 85	4.7	0.024	tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	2	61051541	105724065	Rat
731167	Glom4	Glomerulus QTL 4	2.4	0.0082	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	2	22038044	67038044	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
9590095	Sffal3	Serum free fatty acids level QTL 3	6.78	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	2	28889991	73889991	Rat
70174	BpQTLCluster2	Blood pressure QTL cluster 2	4.24		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	41801363	104744824	Rat
631208	Bw1	Body weight QTL1	5.09		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	2	44904355	85286097	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
5684990	Bmd82	Bone mineral density QTL 82	2.8		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	2	61051541	105724065	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
61355	Bp36	Blood pressure QTL 36	2.9		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	2	7605533	104774005	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1354617	Bp240	Blood pressure QTL 240	4		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	83465677	Rat
1359034	Bp274	Blood pressure QTL 274			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	51266859	96266859	Rat
1558648	Smcn1	Smooth muscle cell number QTL 1		0.039	blood vessel smooth muscle cell quantity (VT:0010525)	aorta smooth muscle cell count per unit vessel length (CMO:0001646)	2	60861391	105861391	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
2306903	Bp336	Blood pressure QTL 336		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	38426449	111295694	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
731184	Mamtr4	Mammary tumor resistance QTL 4		0.0003	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	2	18227137	63227137	Rat
61371	Edpm1	Estrogen-dependent pituitary mass QTL 1	4	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	36868643	81868643	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	44904355	89904355	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat
1582246	Cm60	Cardiac mass QTL 60	5.8		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	33269996	78269996	Rat
1354603	Bp243	Blood pressure QTL 243	3.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	28652666	73652666	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_023977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC095678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF311954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC092568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017276 ⟹ ENSRNOP00000017276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	63,074,899 - 63,103,090 (+)	Ensembl
mRatBN7.2 Ensembl	2	61,348,030 - 61,376,049 (+)	Ensembl
Rnor_6.0 Ensembl	2	62,360,754 - 62,388,771 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118433 ⟹ ENSRNOP00000083312

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	63,074,912 - 63,095,809 (+)	Ensembl
mRatBN7.2 Ensembl	2	61,348,030 - 61,368,736 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000132211 ⟹ ENSRNOP00000103080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	63,074,256 - 63,103,082 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000162067 ⟹ ENSRNOP00000105883

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	63,074,256 - 63,113,577 (+)	Ensembl

RefSeq Acc Id:

NM_023977 ⟹ NP_076467

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	63,075,077 - 63,103,086 (+)	NCBI
mRatBN7.2	2	61,348,030 - 61,376,051 (+)	NCBI
Rnor_6.0	2	62,360,754 - 62,388,773 (+)	NCBI
Rnor_5.0	2	82,299,652 - 82,327,662 (-)	NCBI
RGSC_v3.4	2	61,789,212 - 61,817,179 (+)	RGD
Celera	2	57,320,169 - 57,348,256 (-)	RGD

Sequence:

show sequence

TCGCCCCAGCTCCGAGAATTAACACGGAAGCTCCTGGGGCCGGGACCGTGAGGGAGAGCCGGCC
GGTCCCGCGTCCCTGTCGGTCTGGCGCGGCTCTTCGGCTGGAGCCATGACCTCGCTGACCCAGC
GGAGCTCGGGCCTGGTGCAGCGGCGCACCGAGGCCTCGCGGAACGCTGCCGACAAGGAGCGGGC
GGCGGGCGGCGGCGGCGGCAGCGGCGAGGATGAGGCGCAAAGCCGCCGCGACGAGCAGGACGAC
GACGACAAGGGCGACTCCAAGGAAACGCGGCTGACCCTGATGGAGGAGGTGCTCCTGCTGGGCC
TCAAGGACCGAGAGGGTTACACATCATTTTGGAATGACTGTATATCATCTGGATTACGTGGCTG
TATGTTAATTGAATTAGCTTTGAGAGGAAGGTTACAGTTAGAGGCTTGTGGAATGAGAAGAAAA
AGTCTTTTAACAAGAAAGGTGATCTGTAAATCGGATGCTCCAACAGGAGATGTTCTTCTTGATG
AAGCTCTAAAGCATGTTAAGGAGACTCAGCCTCCAGAGACAGTCCAGAACTGGATCGAGTTACT
TAGTGGTGAGACGTGGAATCCATTAAAATTGCATTATCAGTTAAGAAATGTACGGGAACGATTA
GCTAAAAACCTGGTAGAAAAGGGTGTACTGACGACAGAGAAACAGAACTTCCTCCTGTTTGACA
TGACGACACATCCTCTCACCAACAACAACATTAAGCAGCGCCTCATCAAGAAGGTACAGGAAGC
TGTTCTTGACAAATGGGTAAATGACCCTCACCGAATGGACAAGCGCTTGCTGGCCCTCATTTAC
CTAGCCCATGCCTCAGATGTTTTGGAAAATGCTTTTGCTCCTCTTCTGGACGAGCAGTATGATT
TAGCCACCAAGAGAGTACGGCAGCTTCTCGACTTAGACCCAGAAGTGGAGTGTCTGAAGGCCAA
CACCAACGAAGTTCTCTGGGCCGTGGTAGCTGCGTTTACCAAGTAACTGTCAGAATGCAATGTT
TCCTTTCTCTCATGTGAACCAGTAGCTTTTCTTCTATTGACTCTGGTTTTCTGCAGTTTGTACT
TTCCCACACTAATAATTGGCTTTTGTTCTACAAAACGGTGGGTGGCTATTTCTTTTTGTATGTA
CGCAGGATTCTGCTGGTACGAGAGGCCTTCCTCTTTCTGTTTGTAATCAACCTTATTGCCATAT
TGGCACTTCATTCCCTGCTCATTCTCACTGTTTCCTGTTCTGGGTCTCTGGTGTACTTTGACTT
TCAGAGTACCTCTAGTCACCCGCCTCATGCACAGCGCTTGGATTACCTCAGCTTGCGTTTTCCC
ACATGTGCTTACTCACATGGCCTTCTGCCTACAGTTCACACAAGTCACAACCAGGCCTTCAACT
CACCAAAGGTAAATATCTGTATCTATTAGGACATTTTATACATAGACCTCAGTTGAGATGTATA
CTTAGCAAAATTATTTTTAAATTGAAACAGCACAGTAAATACATAATATAAAATGCCCCTTGAA
CTTTTGCTTCCTATGTAAATCTGTTATATGATTACAGTTGTTATAATTTTAGCTATTAAATCAT
AAAGGTCCAATTGTTTCACAAAGCCAGTTTGGAATGGGCTGCATTCCACTTATGCTGTATATAG
TTTGAATTATATATGAATCGCCCCTTCTTCTGGCCACCTCTGCCTCGTTTTAGTATTTGAAAAA
TTTAATTTTGCATCTGGTGCCCCTCACTTGCTTCATTCTTTGTTATTTGATGGCAAAATAGACC
TCTCATCATTGAAGGAGAGAGGAGATGTGTGACTCCTTCAGGGCTCTTTGTGAGCTATGTTCCT
CATGATAGTCTGCCTGTGCATCTCTTTTGGGACTTTTTTTTTCTTTAACTTTTCCTGTTTTATG
ATTTCTATAGGAAAGAGGCTTGTGACCAGTACTAATCTTGAGTACAGTTTTTTTTTTTGTTGTT
GTTGTTTTGTTTTTCCACTTTTCTGTCCTTAAGTAAATTAATGTCTGCTCTGAAATACCGTTTA
CCTACTCATCTTTTCTTGGAGAAAAGAAAATCAAATATCAGTCCTAGCAGATGTTGCATGTAAT
TTGGTAGCAAGTAACGACTACGACTTGATGATTAAGAATTTCGTAACAGAAAGCTCTGCTGTGT
TTTAATTTTTATATGCAATTATGATAATTAGCACACCTTAAGACTATCAACCTTTGTGTTTTAA
TGTTGATTTTATTCATTATCACTGTTTATTTACTATCAGTTTCATAATGTAAATATTATACATT
GAACAAATTAAATGTCAAATTTTTATTACTATAGTTCATGTTAATAGTGGGGCTTTCAGGTGTC
TAGAAACTTTTGGTGAACATTTGATGCAAAAAGACTAGATGCGTATAACTTTAGAGTTGAATTT
TAAGGGAGTCCTAATATGTATACTATCTTTTTATCTGGAGTAATAAATAAACTATGATCTTGAA
AGTGCCTGAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063282596 ⟹ XP_063138666

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	63,072,610 - 63,103,091 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_076467	(Get FASTA)	NCBI Sequence Viewer
	XP_063138666	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG33623	(Get FASTA)	NCBI Sequence Viewer
	AAH92568	(Get FASTA)	NCBI Sequence Viewer
	EDL82961	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000103080
GenBank Protein	Q9ERE4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_076467 ⟸ NM_023977

- UniProtKB:

Q9ERE4 (UniProtKB/Swiss-Prot), Q569C9 (UniProtKB/TrEMBL), F7ERS2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTSLTQRSSGLVQRRTEASRNAADKERAAGGGGGSGEDEAQSRRDEQDDDDKGDSKETRLTLME
EVLLLGLKDREGYTSFWNDCISSGLRGCMLIELALRGRLQLEACGMRRKSLLTRKVICKSDAPT
GDVLLDEALKHVKETQPPETVQNWIELLSGETWNPLKLHYQLRNVRERLAKNLVEKGVLTTEKQ
NFLLFDMTTHPLTNNNIKQRLIKKVQEAVLDKWVNDPHRMDKRLLALIYLAHASDVLENAFAPL
LDEQYDLATKRVRQLLDLDPEVECLKANTNEVLWAVVAAFTK

hide sequence

Ensembl Acc Id:

ENSRNOP00000017276 ⟸ ENSRNOT00000017276

Ensembl Acc Id:

ENSRNOP00000083312 ⟸ ENSRNOT00000118433

RefSeq Acc Id:	XP_063138666 ⟸ XM_063282596
- Peptide Label:	isoform X1
- UniProtKB:	Q9ERE4 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000105883 ⟸ ENSRNOT00000162067

Ensembl Acc Id:

ENSRNOP00000103080 ⟸ ENSRNOT00000132211

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ERE4-F1-model_v2	AlphaFold	Q9ERE4	1-298	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621226	AgrOrtholog
BioCyc Gene	G2FUF-54043	BioCyc
Ensembl Genes	ENSRNOG00000012186	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000132211	ENTREZGENE
Gene3D-CATH	1.10.3630.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7307277	IMAGE-MGC_LOAD
InterPro	GPP34-like	UniProtKB/Swiss-Prot
	GPP34-like_sf	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108683	IMAGE-MGC_LOAD
NCBI Gene	78961	ENTREZGENE
PANTHER	GOLGI PHOSPHOPROTEIN 3	UniProtKB/Swiss-Prot
	PTHR12704	UniProtKB/Swiss-Prot
Pfam	GPP34	UniProtKB/Swiss-Prot
PhenoGen	Golph3	PhenoGen
RatGTEx	ENSRNOG00000012186	RatGTEx
UniProt	A0A8I5ZWZ2_RAT	UniProtKB/TrEMBL
	A0ABK0LJH8_RAT	UniProtKB/TrEMBL
	A0ABK0LNV2_RAT	UniProtKB/TrEMBL
	F7ERS2	ENTREZGENE, UniProtKB/TrEMBL
	GOLP3_RAT	UniProtKB/Swiss-Prot
	Q569C9	ENTREZGENE, UniProtKB/TrEMBL
	Q9ERE4	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-27	Golph3	golgi phosphoprotein 3	Golph3	golgi phosphoprotein 3 (coat-protein)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-26	Golph3	golgi phosphoprotein 3 (coat-protein)	Golph3	golgi phosphoprotein 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Golph3	golgi phosphoprotein 3	Gmx33	trans-Golgi protein GMx33	Symbol and Name updated	1299863	APPROVED
2002-08-07	Gmx33	trans-Golgi protein GMx33			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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