Taf9b (TATA-box binding protein associated factor 9b) - Rat Genome Database

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Gene: Taf9b (TATA-box binding protein associated factor 9b) Rattus norvegicus
Analyze
Symbol: Taf9b
Name: TATA-box binding protein associated factor 9b
RGD ID: 621116
Description: Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Involved in programmed cell death and response to thiabendazole. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex and transcription factor TFTC complex. Orthologous to human TAF9B (TATA-box binding protein associated factor 9b); INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DN-7; Dn7; neuronal cell death-related gene in neuron 7; neuronal cell death-related gene in neuron-7; TAF9-like RNA polymerase II TATA box binding protein (TBP)-associated factor 31 kD; TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31 kD; TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa; TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor; Taf9l; TAFII31; transcription initiation factor TFIID subunit 9-like; transcription initiation factor TFIID subunit 9B; transcription-associated factor TAFII31L
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X75,354,823 - 75,366,166 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX75,354,825 - 75,366,414 (-)EnsemblGRCr8
mRatBN7.2X71,289,290 - 71,300,142 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX71,289,290 - 71,300,604 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX72,798,223 - 72,807,478 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X76,298,235 - 76,307,490 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X73,861,047 - 73,870,302 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X77,281,234 - 77,295,238 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX77,281,210 - 77,295,426 (-)Ensemblrn6Rnor6.0
Rnor_5.0X56,401,294 - 56,416,018 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X94,342,071 - 94,351,927 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX72,601,506 - 72,610,854 (-)NCBICelera
RGSC_v3.1X94,415,515 - 94,425,356 (-)NCBI
Cytogenetic MapXq22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
17alpha-ethynylestradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,4-dichloroaniline  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (EXP)
Aflatoxin B2 alpha  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
carbamazepine  (ISO)
choline  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
furan  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
GSK-J4  (ISO)
L-methionine  (ISO)
manganese(II) chloride  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
oxybenzone  (ISO)
p-chloromercuribenzoic acid  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (EXP)
pirinixic acid  (EXP,ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
thiabendazole  (EXP)
thimerosal  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
Tungsten carbide  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat TAFII31 gene is induced upon programmed cell death in differentiated PC12 cells deprived of NGF. Aoki T, etal., Biochem Biophys Res Commun 1997 May 8;234(1):230-4.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. Transcriptome analysis provides new insights into liver changes induced in the rat upon dietary administration of the food additives butylated hydroxytoluene, curcumin, propyl gallate and thiabendazole. Stierum R, etal., Food Chem Toxicol. 2008 Aug;46(8):2616-28. Epub 2008 Apr 25.
Additional References at PubMed
PMID:12477932   PMID:12837753   PMID:15489334   PMID:15899866  


Genomics

Comparative Map Data
Taf9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X75,354,823 - 75,366,166 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX75,354,825 - 75,366,414 (-)EnsemblGRCr8
mRatBN7.2X71,289,290 - 71,300,142 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX71,289,290 - 71,300,604 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX72,798,223 - 72,807,478 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X76,298,235 - 76,307,490 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X73,861,047 - 73,870,302 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X77,281,234 - 77,295,238 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX77,281,210 - 77,295,426 (-)Ensemblrn6Rnor6.0
Rnor_5.0X56,401,294 - 56,416,018 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X94,342,071 - 94,351,927 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX72,601,506 - 72,610,854 (-)NCBICelera
RGSC_v3.1X94,415,515 - 94,425,356 (-)NCBI
Cytogenetic MapXq22NCBI
TAF9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X78,129,748 - 78,139,650 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX78,129,748 - 78,139,688 (-)Ensemblhg38GRCh38
GRCh37X77,385,245 - 77,395,147 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X77,271,901 - 77,281,835 (-)NCBIBuild 36Build 36hg18NCBI36
CeleraX77,626,326 - 77,636,254 (-)NCBICelera
Cytogenetic MapXq21.1NCBI
HuRefX70,971,528 - 70,981,808 (-)NCBIHuRef
CHM1_1X77,277,938 - 77,287,872 (-)NCBICHM1_1
T2T-CHM13v2.0X76,564,829 - 76,576,072 (-)NCBIT2T-CHM13v2.0
Taf9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X105,250,480 - 105,264,764 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX105,250,489 - 105,264,764 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X106,206,874 - 106,221,158 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX106,206,883 - 106,221,158 (-)Ensemblmm10GRCm38
MGSCv37X103,402,213 - 103,416,497 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X102,409,593 - 102,422,352 (-)NCBIMGSCv36mm8
CeleraX93,060,248 - 93,074,689 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX47.36NCBI
Taf9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555571,605,669 - 1,617,999 (-)Ensembl
ChiLan1.0NW_0049555571,607,589 - 1,617,748 (-)NCBIChiLan1.0ChiLan1.0
TAF9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X77,704,928 - 77,716,561 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X77,708,539 - 77,720,172 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X67,305,754 - 67,315,714 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X77,417,232 - 77,427,193 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX77,417,232 - 77,427,193 (-)EnsemblpanPan2panpan1.1
TAF9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X60,399,638 - 60,410,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX60,401,419 - 60,410,027 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX51,412,746 - 51,423,112 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X61,638,375 - 61,648,741 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX61,638,379 - 61,647,423 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X59,344,509 - 59,354,875 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X60,954,492 - 60,964,857 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X60,542,584 - 60,552,950 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Taf9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X53,992,158 - 54,001,078 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936547314,344 - 323,040 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936547312,909 - 321,424 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX62,214,338 - 62,229,021 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X62,214,331 - 62,228,782 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X71,321,322 - 71,333,905 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAF9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X67,097,313 - 67,106,076 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX67,099,147 - 67,106,262 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606714,406,789 - 14,415,562 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248362,623,209 - 2,635,133 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248362,623,924 - 2,636,330 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Taf9b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X65,769,494 - 65,778,435 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Taf9b
2 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:375
Count of miRNA genes:227
Interacting mature miRNAs:272
Transcripts:ENSRNOT00000003335
Prediction methods:Microtar, Miranda, Pita
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat

Markers in Region
AI059951  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X71,289,356 - 71,289,539 (+)MAPPERmRatBN7.2
Rnor_6.0X77,281,301 - 77,281,483NCBIRnor6.0
Rnor_5.0X56,401,361 - 56,401,543UniSTSRnor5.0
RGSC_v3.4X94,342,121 - 94,342,303UniSTSRGSC3.4
CeleraX72,601,556 - 72,601,738UniSTS
Cytogenetic MapXq31UniSTS
BF386911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X71,291,008 - 71,291,179 (+)MAPPERmRatBN7.2
Rnor_6.0X77,282,953 - 77,283,123NCBIRnor6.0
Rnor_5.0X56,403,013 - 56,403,183UniSTSRnor5.0
RGSC_v3.4X94,343,773 - 94,343,943UniSTSRGSC3.4
CeleraX72,603,208 - 72,603,378UniSTS
Cytogenetic MapXq31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000088077   ⟹   ENSRNOP00000070237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX77,281,234 - 77,293,395 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089640   ⟹   ENSRNOP00000069372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX77,281,253 - 77,293,386 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090833   ⟹   ENSRNOP00000073996
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX75,354,825 - 75,366,414 (-)Ensembl
mRatBN7.2 EnsemblX71,289,290 - 71,300,604 (-)Ensembl
Rnor_6.0 EnsemblX77,281,234 - 77,295,426 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091234   ⟹   ENSRNOP00000073891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX75,354,825 - 75,366,137 (-)Ensembl
mRatBN7.2 EnsemblX71,289,290 - 71,300,604 (-)Ensembl
Rnor_6.0 EnsemblX77,281,210 - 77,293,497 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000124748   ⟹   ENSRNOP00000109650
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX75,354,825 - 75,366,414 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000128651   ⟹   ENSRNOP00000103440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX75,354,825 - 75,366,414 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170822   ⟹   ENSRNOP00000110065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX75,354,825 - 75,366,414 (-)Ensembl
RefSeq Acc Id: NM_133615   ⟹   NP_598299
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X75,354,840 - 75,364,096 (-)NCBI
mRatBN7.2X71,289,307 - 71,298,563 (-)NCBI
Rnor_6.0X77,281,251 - 77,293,385 (-)NCBI
Rnor_5.0X56,401,294 - 56,416,018 (-)NCBI
RGSC_v3.4X94,342,071 - 94,351,927 (-)RGD
CeleraX72,601,506 - 72,610,854 (-)RGD
Sequence:
RefSeq Acc Id: XM_006256993   ⟹   XP_006257055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X75,354,823 - 75,366,158 (-)NCBI
mRatBN7.2X71,289,290 - 71,300,142 (-)NCBI
Rnor_6.0X77,281,234 - 77,295,237 (-)NCBI
Rnor_5.0X56,401,294 - 56,416,018 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006256994   ⟹   XP_006257056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X75,354,823 - 75,366,166 (-)NCBI
mRatBN7.2X71,289,290 - 71,300,141 (-)NCBI
Rnor_6.0X77,281,234 - 77,295,238 (-)NCBI
Rnor_5.0X56,401,294 - 56,416,018 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099438   ⟹   XP_038955366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X75,356,655 - 75,366,158 (-)NCBI
mRatBN7.2X71,291,211 - 71,300,142 (-)NCBI
RefSeq Acc Id: NP_598299   ⟸   NM_133615
- UniProtKB: Q62880 (UniProtKB/Swiss-Prot),   Q5EAN8 (UniProtKB/Swiss-Prot),   A6IV45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257056   ⟸   XM_006256994
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K6Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257055   ⟸   XM_006256993
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSRNOP00000069372   ⟸   ENSRNOT00000089640
Ensembl Acc Id: ENSRNOP00000073996   ⟸   ENSRNOT00000090833
Ensembl Acc Id: ENSRNOP00000073891   ⟸   ENSRNOT00000091234
Ensembl Acc Id: ENSRNOP00000070237   ⟸   ENSRNOT00000088077
RefSeq Acc Id: XP_038955366   ⟸   XM_039099438
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000110065   ⟸   ENSRNOT00000170822
Ensembl Acc Id: ENSRNOP00000103440   ⟸   ENSRNOT00000128651
Ensembl Acc Id: ENSRNOP00000109650   ⟸   ENSRNOT00000124748

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62880-F1-model_v2 AlphaFold Q62880 1-258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701905
Promoter ID:EPDNEW_R12427
Type:initiation region
Name:Taf9b_1
Description:TATA-box binding protein associated factor 9b
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X77,293,401 - 77,293,461EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621116 AgrOrtholog
BioCyc Gene G2FUF-1917 BioCyc
Ensembl Genes ENSRNOG00000061102 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000090833 ENTREZGENE
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7193160 IMAGE-MGC_LOAD
InterPro Histone-fold UniProtKB/Swiss-Prot
  TFIID-31 UniProtKB/Swiss-Prot
  TFIID_subunit_9 UniProtKB/Swiss-Prot
KEGG Report rno:171152 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105328 IMAGE-MGC_LOAD
NCBI Gene 171152 ENTREZGENE
PANTHER TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR UniProtKB/Swiss-Prot
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 9B UniProtKB/Swiss-Prot
Pfam TFIID-31kDa UniProtKB/Swiss-Prot
PhenoGen Taf9b PhenoGen
RatGTEx ENSRNOG00000061102 RatGTEx
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot
UniProt A0A0G2K6Z1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R834_RAT UniProtKB/TrEMBL
  A0ABK0LG08_RAT UniProtKB/TrEMBL
  A0ABK0LGX6_RAT UniProtKB/TrEMBL
  A0ABK0LPJ7_RAT UniProtKB/TrEMBL
  A6IV44_RAT UniProtKB/TrEMBL
  A6IV45 ENTREZGENE, UniProtKB/TrEMBL
  Q5EAN8 ENTREZGENE
  Q62880 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5EAN8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-14 Taf9b  TATA-box binding protein associated factor 9b  Taf9b  TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Taf9b  TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor  Taf9l  TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Taf9l  TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa    TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31 kD  Name updated 1299863 APPROVED
2002-08-07 Taf9l  TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31 kD      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_process involved in various growth regulatory processes including cell cycle progression 634165