Spata7 (spermatogenesis associated 7) - Rat Genome Database

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Gene: Spata7 (spermatogenesis associated 7) Rattus norvegicus
Analyze
Symbol: Spata7
Name: spermatogenesis associated 7
RGD ID: 621010
Description: Involved in spermatogenesis. Predicted to be located in microtubule cytoskeleton and photoreceptor connecting cilium. Predicted to be active in cytoskeleton and photoreceptor cell cilium. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 3. Orthologous to human SPATA7 (spermatogenesis associated 7); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fertility related protein WMP1; fertility-related protein WMP1; rat sperm DNA no.3; RSD-3; sperm DNA no.3; spermatogenesis-associated protein 7 homolog; Wmp1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86123,609,519 - 123,655,001 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6123,609,535 - 123,655,001 (+)EnsemblGRCr8
mRatBN7.26117,879,828 - 117,925,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6117,879,823 - 117,925,284 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6118,030,891 - 118,075,861 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06118,327,696 - 118,372,657 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06117,662,562 - 117,707,531 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06122,603,248 - 122,648,718 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6122,603,269 - 122,648,699 (+)Ensemblrn6Rnor6.0
Rnor_5.06131,817,495 - 131,862,960 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46122,786,739 - 122,832,181 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6115,441,836 - 115,487,163 (+)NCBICelera
RGSC_v3.16122,796,896 - 122,836,008 (+)NCBI
Cytogenetic Map6q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. A novel gene, RSD-3/HSD-3.1, encodes a meiotic-related protein expressed in rat and human testis. Zhang X, etal., J Mol Med 2003 Jun;81(6):380-7. Epub 2003 May 8.
Additional References at PubMed
PMID:12477932   PMID:25398945   PMID:29899041  


Genomics

Comparative Map Data
Spata7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86123,609,519 - 123,655,001 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6123,609,535 - 123,655,001 (+)EnsemblGRCr8
mRatBN7.26117,879,828 - 117,925,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6117,879,823 - 117,925,284 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6118,030,891 - 118,075,861 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06118,327,696 - 118,372,657 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06117,662,562 - 117,707,531 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06122,603,248 - 122,648,718 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6122,603,269 - 122,648,699 (+)Ensemblrn6Rnor6.0
Rnor_5.06131,817,495 - 131,862,960 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46122,786,739 - 122,832,181 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6115,441,836 - 115,487,163 (+)NCBICelera
RGSC_v3.16122,796,896 - 122,836,008 (+)NCBI
Cytogenetic Map6q32NCBI
SPATA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381488,385,657 - 88,470,350 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1488,384,924 - 88,470,350 (+)Ensemblhg38GRCh38
GRCh371488,852,001 - 88,904,804 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361487,921,765 - 87,974,557 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341487,921,763 - 87,974,553NCBI
Celera1468,897,730 - 68,950,399 (+)NCBICelera
Cytogenetic Map14q31.3NCBI
HuRef1469,022,355 - 69,075,024 (+)NCBIHuRef
CHM1_11488,790,015 - 88,842,671 (+)NCBICHM1_1
T2T-CHM13v2.01482,606,616 - 82,691,159 (+)NCBIT2T-CHM13v2.0
Spata7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391298,594,169 - 98,636,078 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1298,594,416 - 98,636,074 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381298,628,129 - 98,669,819 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1298,628,157 - 98,669,815 (+)Ensemblmm10GRCm38
MGSCv371299,866,394 - 99,908,025 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361299,029,234 - 99,070,865 (+)NCBIMGSCv36mm8
Celera1299,853,128 - 99,894,750 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1249.88NCBI
Spata7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543811,033,998 - 11,069,128 (+)Ensembl
ChiLan1.0NW_00495543811,033,089 - 11,069,178 (+)NCBIChiLan1.0ChiLan1.0
SPATA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21589,529,105 - 89,582,633 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11488,745,611 - 88,799,135 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01469,002,723 - 69,056,185 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11488,362,737 - 88,415,083 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1488,367,757 - 88,415,045 (+)EnsemblpanPan2panpan1.1
SPATA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1859,658,295 - 59,697,409 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl859,658,365 - 59,697,318 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha859,236,261 - 59,275,385 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0859,927,670 - 59,966,727 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl859,927,190 - 59,966,727 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1859,606,408 - 59,645,505 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0859,651,851 - 59,691,546 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0859,985,905 - 60,025,002 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Spata7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864016,157,667 - 16,190,808 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648815,878,158 - 15,911,415 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648815,878,167 - 15,911,301 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7110,309,462 - 110,364,033 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.17110,309,414 - 110,368,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27116,807,810 - 116,862,438 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12466,041,574 - 66,086,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2466,041,568 - 66,088,716 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605353,394,391 - 53,444,727 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473413,879,522 - 13,943,703 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473413,869,210 - 13,943,864 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Spata7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17111,784,454 - 111,829,643 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Spata7
135 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:24
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000005297
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_138862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK470849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK600391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000005297   ⟹   ENSRNOP00000005297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,609,540 - 123,654,998 (+)Ensembl
mRatBN7.2 Ensembl6117,879,895 - 117,925,284 (+)Ensembl
Rnor_6.0 Ensembl6122,603,269 - 122,648,699 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096420   ⟹   ENSRNOP00000096066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,609,540 - 123,654,998 (+)Ensembl
mRatBN7.2 Ensembl6117,879,895 - 117,925,284 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097471   ⟹   ENSRNOP00000091876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,609,540 - 123,654,998 (+)Ensembl
mRatBN7.2 Ensembl6117,883,199 - 117,925,183 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098377   ⟹   ENSRNOP00000093644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,609,589 - 123,654,900 (+)Ensembl
mRatBN7.2 Ensembl6117,879,894 - 117,925,284 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104996   ⟹   ENSRNOP00000091805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,609,535 - 123,654,988 (+)Ensembl
mRatBN7.2 Ensembl6117,879,823 - 117,925,284 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105094   ⟹   ENSRNOP00000084351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,609,543 - 123,654,990 (+)Ensembl
mRatBN7.2 Ensembl6117,879,827 - 117,925,284 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108318   ⟹   ENSRNOP00000094270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,609,578 - 123,654,900 (+)Ensembl
mRatBN7.2 Ensembl6117,879,840 - 117,925,284 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118680   ⟹   ENSRNOP00000085724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,632,760 - 123,655,001 (+)Ensembl
mRatBN7.2 Ensembl6117,903,043 - 117,925,284 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000156669   ⟹   ENSRNOP00000108037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6123,609,591 - 123,654,905 (+)Ensembl
RefSeq Acc Id: NM_138862   ⟹   NP_620217
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,614 - 123,655,001 (+)NCBI
mRatBN7.26117,879,895 - 117,925,284 (+)NCBI
Rnor_6.06122,603,331 - 122,648,718 (+)NCBI
Rnor_5.06131,817,495 - 131,862,960 (+)NCBI
RGSC_v3.46122,786,739 - 122,832,181 (+)RGD
Celera6115,441,836 - 115,487,163 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240413   ⟹   XP_006240475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,519 - 123,654,902 (+)NCBI
mRatBN7.26117,879,831 - 117,925,284 (+)NCBI
Rnor_6.06122,603,248 - 122,648,718 (+)NCBI
Rnor_5.06131,817,495 - 131,862,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240414   ⟹   XP_006240476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,559 - 123,654,902 (+)NCBI
mRatBN7.26117,879,839 - 117,925,284 (+)NCBI
Rnor_6.06122,603,249 - 122,648,718 (+)NCBI
Rnor_5.06131,817,495 - 131,862,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240415   ⟹   XP_006240477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,519 - 123,654,902 (+)NCBI
mRatBN7.26117,879,831 - 117,925,284 (+)NCBI
Rnor_6.06122,603,248 - 122,648,718 (+)NCBI
Rnor_5.06131,817,495 - 131,862,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764737   ⟹   XP_008762959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,560 - 123,654,902 (+)NCBI
mRatBN7.26117,879,839 - 117,925,284 (+)NCBI
Rnor_6.06122,603,277 - 122,648,718 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111753   ⟹   XP_038967681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,582 - 123,654,902 (+)NCBI
mRatBN7.26117,879,828 - 117,925,284 (+)NCBI
RefSeq Acc Id: XM_039111756   ⟹   XP_038967684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,575 - 123,654,902 (+)NCBI
mRatBN7.26117,879,860 - 117,925,284 (+)NCBI
RefSeq Acc Id: XM_063261531   ⟹   XP_063117601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,577 - 123,654,902 (+)NCBI
RefSeq Acc Id: XM_063261532   ⟹   XP_063117602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,615,996 - 123,654,902 (+)NCBI
RefSeq Acc Id: XM_063261533   ⟹   XP_063117603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,530 - 123,654,902 (+)NCBI
RefSeq Acc Id: XM_063261534   ⟹   XP_063117604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,559 - 123,654,902 (+)NCBI
RefSeq Acc Id: XM_063261535   ⟹   XP_063117605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,550 - 123,654,902 (+)NCBI
RefSeq Acc Id: NP_620217   ⟸   NM_138862
- UniProtKB: F1LP56 (UniProtKB/TrEMBL),   A6JEE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240475   ⟸   XM_006240413
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GBQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240476   ⟸   XM_006240414
- Peptide Label: isoform X5
- UniProtKB: Q9R0A3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006240477   ⟸   XM_006240415
- Peptide Label: isoform X6
- UniProtKB: Q9R0A3 (UniProtKB/Swiss-Prot),   A0A8I6GKR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762959   ⟸   XM_008764737
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZZV7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005297   ⟸   ENSRNOT00000005297
RefSeq Acc Id: XP_038967681   ⟸   XM_039111753
- Peptide Label: isoform X1
- UniProtKB: A6JEE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967684   ⟸   XM_039111756
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AZX0 (UniProtKB/TrEMBL),   A0A8I5ZZV7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091876   ⟸   ENSRNOT00000097471
Ensembl Acc Id: ENSRNOP00000084351   ⟸   ENSRNOT00000105094
Ensembl Acc Id: ENSRNOP00000094270   ⟸   ENSRNOT00000108318
Ensembl Acc Id: ENSRNOP00000096066   ⟸   ENSRNOT00000096420
Ensembl Acc Id: ENSRNOP00000091805   ⟸   ENSRNOT00000104996
Ensembl Acc Id: ENSRNOP00000093644   ⟸   ENSRNOT00000098377
Ensembl Acc Id: ENSRNOP00000085724   ⟸   ENSRNOT00000118680
RefSeq Acc Id: XP_063117603   ⟸   XM_063261533
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GBQ8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117605   ⟸   XM_063261535
- Peptide Label: isoform X8
- UniProtKB: Q9R0A3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063117604   ⟸   XM_063261534
- Peptide Label: isoform X7
- UniProtKB: Q9R0A3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063117601   ⟸   XM_063261531
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AZX0 (UniProtKB/TrEMBL),   A0A8I5ZZV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117602   ⟸   XM_063261532
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AZX0 (UniProtKB/TrEMBL),   A0A8I5ZZV7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108037   ⟸   ENSRNOT00000156669

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0A3-F1-model_v2 AlphaFold Q9R0A3 1-526 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694768
Promoter ID:EPDNEW_R5292
Type:initiation region
Name:Spata7_1
Description:spermatogenesis associated 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06122,603,296 - 122,603,356EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621010 AgrOrtholog
BioCyc Gene G2FUF-36536 BioCyc
Ensembl Genes ENSRNOG00000003955 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000005297 ENTREZGENE
  ENSRNOT00000097471 ENTREZGENE
  ENSRNOT00000098377 ENTREZGENE
  ENSRNOT00000104996 ENTREZGENE
  ENSRNOT00000108318 ENTREZGENE
  ENSRNOT00000118680 ENTREZGENE
IMAGE_CLONE IMAGE:7114267 IMAGE-MGC_LOAD
InterPro SPATA7 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93176 IMAGE-MGC_LOAD
NCBI Gene 192225 ENTREZGENE
PANTHER PTHR14917 UniProtKB/Swiss-Prot
  SPERMATOGENESIS-ASSOCIATED PROTEIN 7 UniProtKB/Swiss-Prot
Pfam HSD3 UniProtKB/Swiss-Prot
PhenoGen Spata7 PhenoGen
RatGTEx ENSRNOG00000003955 RatGTEx
UniProt A0A8I5ZZV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACK6_RAT UniProtKB/TrEMBL
  A0A8I6ACS9_RAT UniProtKB/TrEMBL
  A0A8I6AQC2_RAT UniProtKB/TrEMBL
  A0A8I6AZX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GBQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKR6 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LVG3_RAT UniProtKB/TrEMBL
  A6JEE5 ENTREZGENE, UniProtKB/TrEMBL
  F1LP56 ENTREZGENE, UniProtKB/TrEMBL
  Q6AZ59_RAT UniProtKB/TrEMBL
  Q9R0A3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Spata7  spermatogenesis associated 7  Wmp1  fertility related protein WMP1  Symbol and Name updated 1299863 APPROVED
2002-08-07 Wmp1  fertility related protein WMP1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed only in primary spermatocytes during meiosis division I 1302279