Stx3 (syntaxin 3) - Rat Genome Database

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Gene: Stx3 (syntaxin 3) Rattus norvegicus
Analyze
Symbol: Stx3
Name: syntaxin 3
RGD ID: 621005
Description: Enables SNAP receptor activity and arachidonate binding activity. Involved in membrane fusion and neuron projection development. Located in growth cone and plasma membrane. Part of SNARE complex. Human ortholog(s) of this gene implicated in congenital diarrhea. Orthologous to human STX3 (syntaxin 3); INTERACTS WITH 1-benzylpiperazine; 17beta-estradiol; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Stx3a; syntaxin-3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,940,697 - 218,114,865 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1217,909,169 - 218,110,466 (-)EnsemblGRCr8
mRatBN7.21208,617,018 - 208,686,240 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1208,639,115 - 208,685,805 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1217,017,514 - 217,060,397 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,004,990 - 224,047,866 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,771,951 - 216,814,831 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01228,137,781 - 228,195,004 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,149,867 - 228,194,977 (-)Ensemblrn6Rnor6.0
Rnor_5.01235,205,648 - 235,262,820 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41214,554,512 - 214,597,396 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1206,113,799 - 206,156,646 (-)NCBICelera
RGSC_v3.11214,712,944 - 214,755,826 (-)NCBI
Cytogenetic Map1q43NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-benzylpiperazine  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
8-Br-cAMP  (ISO)
acetamide  (EXP)
acetazolamide  (ISO)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
boron nitride  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
corosolic acid  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
D-penicillamine  (EXP)
DDE  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
disulfiram  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
ethyl methanesulfonate  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
glycidol  (EXP)
hydrogen cyanide  (ISO)
iron dichloride  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
leflunomide  (ISO)
mercury dibromide  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (ISO)
nickel dichloride  (ISO)
niclosamide  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium cyanide  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. The syntaxin family of vesicular transport receptors. Bennett MK, etal., Cell 1993 Sep 10;74(5):863-73.
2. Antigen retrieval reveals widespread basolateral expression of syntaxin 3 in renal epithelia. Breton S, etal., Am J Physiol Renal Physiol 2002 Mar;282(3):F523-9.
3. Omega-3 and omega-6 fatty acids stimulate cell membrane expansion by acting on syntaxin 3. Darios F and Davletov B, Nature. 2006 Apr 6;440(7085):813-7.
4. Accumulation of non-outer segment proteins in the outer segment underlies photoreceptor degeneration in Bardet-Biedl syndrome. Datta P, etal., Proc Natl Acad Sci U S A. 2015 Aug 11;112(32):E4400-9. doi: 10.1073/pnas.1510111112. Epub 2015 Jul 27.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. A novel ubiquitous form of Munc-18 interacts with multiple syntaxins. Use of the yeast two-hybrid system to study interactions between proteins involved in membrane traffic. Hata Y and Sudhof TC, J Biol Chem 1995 Jun 2;270(22):13022-8.
7. A cytosolic splice variant of Cab45 interacts with Munc18b and impacts on amylase secretion by pancreatic acini. Lam PP, etal., Mol Biol Cell. 2007 Jul;18(7):2473-80. Epub 2007 Apr 18.
8. Ca(2+)-dependent and -independent activities of neural and non-neural synaptotagmins. Li C, etal., Nature 1995 Jun 15;375(6532):594-9.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Membrane fusion between liposomes containing SNARE proteins involved in mast cell exocytosis. Sakiyama H, etal., Inflamm Res. 2009 Mar;58(3):139-42.
15. Functional and biochemical analysis of the C2 domains of synaptotagmin IV. Thomas DM, etal., Mol Biol Cell. 1999 Jul;10(7):2285-95.
Additional References at PubMed
PMID:8108429   PMID:8824312   PMID:8996080   PMID:10336434   PMID:10469351   PMID:11487543   PMID:12198139   PMID:12477932   PMID:12828989   PMID:12935901   PMID:15576373   PMID:15943887  
PMID:16186111   PMID:16339081   PMID:17408745   PMID:17693260   PMID:18321981   PMID:18505797   PMID:18535671   PMID:18588921   PMID:18683220   PMID:19056867   PMID:19515809   PMID:19932892  
PMID:20829354   PMID:20844248   PMID:21720706   PMID:23376485   PMID:23395379   PMID:23549422   PMID:24323579   PMID:24680688   PMID:29549124   PMID:31962145  


Genomics

Comparative Map Data
Stx3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,940,697 - 218,114,865 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1217,909,169 - 218,110,466 (-)EnsemblGRCr8
mRatBN7.21208,617,018 - 208,686,240 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1208,639,115 - 208,685,805 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1217,017,514 - 217,060,397 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01224,004,990 - 224,047,866 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,771,951 - 216,814,831 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01228,137,781 - 228,195,004 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1228,149,867 - 228,194,977 (-)Ensemblrn6Rnor6.0
Rnor_5.01235,205,648 - 235,262,820 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41214,554,512 - 214,597,396 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1206,113,799 - 206,156,646 (-)NCBICelera
RGSC_v3.11214,712,944 - 214,755,826 (-)NCBI
Cytogenetic Map1q43NCBI
STX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381159,754,188 - 59,805,878 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1159,713,456 - 59,805,882 (+)Ensemblhg38GRCh38
GRCh371159,522,849 - 59,573,351 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,279,465 - 59,326,755 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341159,279,464 - 59,326,752NCBI
Celera1156,885,275 - 56,936,097 (+)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1155,870,047 - 55,920,737 (+)NCBIHuRef
CHM1_11159,388,526 - 59,439,344 (+)NCBICHM1_1
T2T-CHM13v2.01159,706,662 - 59,757,169 (+)NCBIT2T-CHM13v2.0
Stx3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,752,482 - 11,798,933 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,752,482 - 11,796,767 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381911,775,118 - 11,821,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,775,118 - 11,819,403 (-)Ensemblmm10GRCm38
MGSCv371911,849,608 - 11,893,893 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361911,842,163 - 11,886,448 (-)NCBIMGSCv36mm8
Celera1912,449,207 - 12,493,664 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.52NCBI
Stx3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555114,196,114 - 4,218,961 (+)Ensembl
ChiLan1.0NW_0049555114,183,210 - 4,219,528 (+)NCBIChiLan1.0ChiLan1.0
STX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2960,883,565 - 60,933,584 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11161,924,031 - 61,976,699 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01154,976,575 - 55,027,638 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,426,888 - 58,476,417 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,426,894 - 58,476,417 (+)EnsemblpanPan2panpan1.1
STX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12150,298,040 - 50,322,773 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2150,298,158 - 50,318,663 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2149,740,398 - 49,762,866 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02151,472,780 - 51,495,160 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2151,472,484 - 51,524,620 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12150,518,990 - 50,541,803 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02150,618,082 - 50,640,719 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02151,243,359 - 51,264,997 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stx3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494712,830,408 - 12,863,135 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,941,953 - 2,971,405 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,944,230 - 2,976,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl211,696,913 - 11,740,744 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1211,694,788 - 11,739,858 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2211,061,370 - 11,088,238 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,866,853 - 13,916,803 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,874,526 - 13,916,997 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038111,197,172 - 111,247,259 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stx3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248641,054,284 - 1,090,398 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248641,054,130 - 1,091,071 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Stx3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1211,048,489 - 11,096,033 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stx3
2215 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:757
Count of miRNA genes:310
Interacting mature miRNAs:395
Transcripts:ENSRNOT00000028535
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8693637Alc29Alcohol consumption QTL 292.70.258drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1217412367243666627Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1357335Bw39Body weight QTL 393.3body mass (VT:0001259)body weight (CMO:0000012)1207243873252243873Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
2293674Bss39Bone structure and strength QTL 397.10.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)1210980612255980612Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1177339686222339686Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1181059071226059071Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1181059071226059071Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1182039247227039247Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1183564652228564652Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1193964073238964073Rat
8693661Alc34Alcohol consumption QTL 342.20.611drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1217412367238041033Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1181059071226059071Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
2293694Bss38Bone structure and strength QTL 387.050.0001femur strength trait (VT:0010010)femur stiffness (CMO:0001674)1210980612255980612Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1181059071226059071Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1194575422239575422Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1193400541238400541Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1182535316227535316Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1207163993269633915Rat
2300175Bmd40Bone mineral density QTL 4015.40.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)1210980612255980612Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1181059071226059071Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1181059071226059071Rat
2293655Bss36Bone structure and strength QTL 3610.660.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1210980612255980612Rat
1298084Thym4Thymus enlargement QTL 410.68thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1207243873252243873Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
2314011Gluco56Glucose level QTL 56blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1209203273254203273Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1202543537247543537Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
61376Bp42Blood pressure QTL 4223.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1207243873252243873Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1208479811269633915Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1203300512229359342Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1180739993225739993Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1191190115223964326Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1172718770228180370Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1358916Kidm22Kidney mass QTL 223.32kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1212738576257738576Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
2292218Kidm35Kidney mass QTL 35kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1208798288253798288Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1192995199237995199Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1201464383246464383Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1203675682248675682Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1185979875230979875Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1197807365233480676Rat
2293700Bmd27Bone mineral density QTL 276.60.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1210980612255980612Rat
2293701Bmd34Bone mineral density QTL 348.30.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)1210980612255980612Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1193400541238400541Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1202851915223964440Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1173363824227535316Rat
1600374Mcs17Mammary carcinoma susceptibility QTL 173mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1207099883252099883Rat
1600363Hc6Hypercalciuria QTL 62.7urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1210980612255980612Rat
8693618Alc25Alcohol consumption QTL 2530.28drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1217412367238041033Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1191260175236260175Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2325727Pia41Pristane induced arthritis QTL 41joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1188241285233241285Rat
7394701Uae46Urinary albumin excretion QTL 463.60.0056urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1210980612255980612Rat

Markers in Region
D1Got205  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81218,074,855 - 218,075,013 (+)Marker Load Pipeline
mRatBN7.21208,650,087 - 208,650,245 (+)MAPPERmRatBN7.2
Rnor_6.01228,159,195 - 228,159,348NCBIRnor6.0
Rnor_5.01235,227,047 - 235,227,200UniSTSRnor5.0
RGSC_v3.41214,561,787 - 214,561,940UniSTSRGSC3.4
RGSC_v3.41214,561,786 - 214,561,939RGDRGSC3.4
Celera1206,121,068 - 206,121,221UniSTS
RGSC_v3.11214,720,216 - 214,720,369RGD
RH 3.4 Map11502.0RGD
RH 3.4 Map11502.0UniSTS
Cytogenetic Map1q43UniSTS
BE121305  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21208,663,072 - 208,663,246 (+)MAPPERmRatBN7.2
Rnor_6.01228,172,174 - 228,172,347NCBIRnor6.0
Rnor_5.01235,240,026 - 235,240,199UniSTSRnor5.0
RGSC_v3.41214,574,766 - 214,574,939UniSTSRGSC3.4
Celera1206,134,047 - 206,134,220UniSTS
RH 3.4 Map11502.1UniSTS
Cytogenetic Map1q43UniSTS
RH138992  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21208,641,923 - 208,642,127 (+)MAPPERmRatBN7.2
Rnor_6.01228,151,031 - 228,151,234NCBIRnor6.0
Rnor_5.01235,218,883 - 235,219,086UniSTSRnor5.0
RGSC_v3.41214,553,622 - 214,553,825UniSTSRGSC3.4
Celera1206,112,909 - 206,113,112UniSTS
RH 3.4 Map11505.9UniSTS
Cytogenetic Map1q43UniSTS
RH139783  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21208,641,269 - 208,641,475 (+)MAPPERmRatBN7.2
Rnor_6.01228,150,377 - 228,150,582NCBIRnor6.0
Rnor_5.01235,218,229 - 235,218,434UniSTSRnor5.0
RGSC_v3.41214,552,968 - 214,553,173UniSTSRGSC3.4
Celera1206,112,255 - 206,112,460UniSTS
RH 3.4 Map11505.9UniSTS
Cytogenetic Map1q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 91 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006231097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010058290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L20820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000028498   ⟹   ENSRNOP00000028498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1217,940,781 - 218,110,466 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000028535   ⟹   ENSRNOP00000028535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1218,065,960 - 218,110,420 (-)Ensembl
mRatBN7.2 Ensembl1208,641,192 - 208,685,781 (-)Ensembl
Rnor_6.0 Ensembl1228,149,867 - 228,194,977 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094739   ⟹   ENSRNOP00000092371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1217,979,196 - 218,110,466 (-)Ensembl
mRatBN7.2 Ensembl1208,645,167 - 208,667,262 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102678   ⟹   ENSRNOP00000097210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1218,066,467 - 218,110,466 (-)Ensembl
mRatBN7.2 Ensembl1208,641,191 - 208,685,805 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112820   ⟹   ENSRNOP00000079624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1218,065,526 - 218,110,466 (-)Ensembl
mRatBN7.2 Ensembl1208,639,115 - 208,685,805 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119247   ⟹   ENSRNOP00000078489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1218,066,467 - 218,110,466 (-)Ensembl
mRatBN7.2 Ensembl1208,641,192 - 208,685,781 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120182   ⟹   ENSRNOP00000097922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1217,963,513 - 218,110,466 (-)Ensembl
mRatBN7.2 Ensembl1208,639,115 - 208,685,805 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142473   ⟹   ENSRNOP00000099055
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1217,909,169 - 218,110,466 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170925   ⟹   ENSRNOP00000106131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1218,065,946 - 218,110,466 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000173608   ⟹   ENSRNOP00000110442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1218,060,161 - 218,110,466 (-)Ensembl
RefSeq Acc Id: NM_031124   ⟹   NP_112386
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,067,582 - 218,110,466 (-)NCBI
mRatBN7.21208,642,814 - 208,685,700 (-)NCBI
Rnor_6.01228,151,921 - 228,194,905 (-)NCBI
Rnor_5.01235,205,648 - 235,262,820 (-)NCBI
RGSC_v3.41214,554,512 - 214,597,396 (-)RGD
Celera1206,113,799 - 206,156,646 (-)RGD
Sequence:
RefSeq Acc Id: XM_006231097   ⟹   XP_006231159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,063,415 - 218,114,865 (-)NCBI
mRatBN7.21208,639,534 - 208,686,224 (-)NCBI
Rnor_6.01228,147,754 - 228,195,004 (-)NCBI
Rnor_5.01235,205,648 - 235,262,820 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760262   ⟹   XP_008758484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,069,407 - 218,114,865 (-)NCBI
mRatBN7.21208,644,639 - 208,686,240 (-)NCBI
Rnor_6.01228,153,646 - 228,195,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760263   ⟹   XP_008758485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,065,956 - 218,114,865 (-)NCBI
mRatBN7.21208,641,188 - 208,686,211 (-)NCBI
Rnor_6.01228,150,281 - 228,195,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589775   ⟹   XP_017445264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,063,415 - 218,091,306 (-)NCBI
mRatBN7.21208,639,534 - 208,686,237 (-)NCBI
Rnor_6.01228,147,754 - 228,195,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092292   ⟹   XP_038948220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,041,791 - 218,114,865 (-)NCBI
mRatBN7.21208,617,018 - 208,686,215 (-)NCBI
RefSeq Acc Id: XM_063275258   ⟹   XP_063131328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,940,697 - 218,114,865 (-)NCBI
RefSeq Acc Id: XM_063275266   ⟹   XP_063131336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,065,956 - 218,114,865 (-)NCBI
RefSeq Acc Id: XM_063275275   ⟹   XP_063131345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,963,568 - 218,114,865 (-)NCBI
RefSeq Acc Id: XR_005492999
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81218,041,791 - 218,114,865 (-)NCBI
mRatBN7.21208,617,018 - 208,686,209 (-)NCBI
RefSeq Acc Id: XR_010058289
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,963,567 - 218,114,865 (-)NCBI
RefSeq Acc Id: XR_010058290
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81217,963,567 - 218,114,865 (-)NCBI
RefSeq Acc Id: NP_112386   ⟸   NM_031124
- UniProtKB: Q08849 (UniProtKB/Swiss-Prot),   B4F7E6 (UniProtKB/TrEMBL),   A0A8I5ZL11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006231159   ⟸   XM_006231097
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZRD1 (UniProtKB/TrEMBL),   A6I0B2 (UniProtKB/TrEMBL),   A6I0B3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758485   ⟸   XM_008760263
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AS91 (UniProtKB/TrEMBL),   A0A8I6AGY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008758484   ⟸   XM_008760262
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017445264   ⟸   XM_017589775
- Peptide Label: isoform X6
- UniProtKB: A6I0B5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028535   ⟸   ENSRNOT00000028535
RefSeq Acc Id: XP_038948220   ⟸   XM_039092292
- Peptide Label: isoform X7
Ensembl Acc Id: ENSRNOP00000079624   ⟸   ENSRNOT00000112820
Ensembl Acc Id: ENSRNOP00000078489   ⟸   ENSRNOT00000119247
Ensembl Acc Id: ENSRNOP00000097210   ⟸   ENSRNOT00000102678
Ensembl Acc Id: ENSRNOP00000092371   ⟸   ENSRNOT00000094739
Ensembl Acc Id: ENSRNOP00000097922   ⟸   ENSRNOT00000120182
RefSeq Acc Id: XP_063131328   ⟸   XM_063275258
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063131345   ⟸   XM_063275275
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063131336   ⟸   XM_063275266
- Peptide Label: isoform X4
- UniProtKB: Q08849 (UniProtKB/Swiss-Prot),   A0A8I5ZL11 (UniProtKB/TrEMBL),   B4F7E6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099055   ⟸   ENSRNOT00000142473
Ensembl Acc Id: ENSRNOP00000106131   ⟸   ENSRNOT00000170925
Ensembl Acc Id: ENSRNOP00000028498   ⟸   ENSRNOT00000028498
Ensembl Acc Id: ENSRNOP00000110442   ⟸   ENSRNOT00000173608
Protein Domains
t-SNARE coiled-coil homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q08849-F1-model_v2 AlphaFold Q08849 1-289 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690795
Promoter ID:EPDNEW_R1319
Type:initiation region
Name:Stx3_1
Description:syntaxin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01228,194,960 - 228,195,020EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621005 AgrOrtholog
BIND 130902
  130912
  133977
  134467
  134476
  134480
BioCyc Gene G2FUF-56352 BioCyc
Ensembl Genes ENSRNOG00000021013 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000028498 ENTREZGENE
  ENSRNOT00000028535.6 UniProtKB/Swiss-Prot
  ENSRNOT00000094739 ENTREZGENE
  ENSRNOT00000102678 ENTREZGENE
  ENSRNOT00000112820 ENTREZGENE
  ENSRNOT00000142473 ENTREZGENE
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot
  1.20.58.70 UniProtKB/Swiss-Prot
InterPro SNARE UniProtKB/Swiss-Prot
  Stx3 UniProtKB/Swiss-Prot
  Syntaxin UniProtKB/Swiss-Prot
  Syntaxin/epimorphin_CS UniProtKB/Swiss-Prot
  Syntaxin_N UniProtKB/Swiss-Prot
  T_SNARE_dom UniProtKB/Swiss-Prot
KEGG Report rno:81802 UniProtKB/Swiss-Prot
NCBI Gene 81802 ENTREZGENE
PANTHER PTHR19957 UniProtKB/Swiss-Prot
  PTHR19957:SF34 UniProtKB/Swiss-Prot
Pfam SNARE UniProtKB/Swiss-Prot
  Syntaxin UniProtKB/Swiss-Prot
PhenoGen Stx3 PhenoGen
PROSITE SYNTAXIN UniProtKB/Swiss-Prot
  T_SNARE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000021013 RatGTEx
SMART SynN UniProtKB/Swiss-Prot
  t_SNARE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47661 UniProtKB/Swiss-Prot
UniProt A0A8I5ZL11 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZRD1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AS91 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GMR2_RAT UniProtKB/TrEMBL
  A0ABK0LCI3_RAT UniProtKB/TrEMBL
  A0ABK0LV70_RAT UniProtKB/TrEMBL
  A0ABK0LYS7_RAT UniProtKB/TrEMBL
  A6I0B2 ENTREZGENE, UniProtKB/TrEMBL
  A6I0B3 ENTREZGENE, UniProtKB/TrEMBL
  A6I0B5 ENTREZGENE, UniProtKB/TrEMBL
  A6I0B6_RAT UniProtKB/TrEMBL
  B4F7E6 ENTREZGENE, UniProtKB/TrEMBL
  D4A4C4_RAT UniProtKB/TrEMBL
  Q08849 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-12-14 Stx3  syntaxin 3  Stx3a    Symbol updated 1299863 APPROVED
2002-08-07 Stx3a  syntaxin 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains C-terminal hydrophobic domain anchors protein on the cytoplasmic side of the membrane 68313
gene_expression protein expressed in neuronal cell types throughout kidney 730051
gene_process important for calcium-dependent exocytosis 68313
gene_protein protein weighs 37 kDa 730051