Sgta (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 7 | 9,304,381 - 9,321,157 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 7 | 9,304,197 - 9,321,669 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 7 | 8,653,681 - 8,670,460 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 7 | 8,653,778 - 8,670,458 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 7 | 11,538,583 - 11,554,536 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 7 | 13,414,080 - 13,430,033 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 7 | 11,280,593 - 11,296,537 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 7 | 11,521,949 - 11,538,691 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 7 | 11,521,998 - 11,539,319 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 7 | 11,689,292 - 11,706,055 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 7 | 10,137,703 - 10,153,619 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 7 | 6,841,267 - 6,857,190 (+) | NCBI | | Celera | | | RGSC_v3.1 | 7 | 10,137,690 - 10,154,362 (+) | NCBI | | | | | Cytogenetic Map | 7 | q11 | NCBI | | | | |
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SGTA (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 19 | 2,754,715 - 2,783,273 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 19 | 2,754,711 - 2,783,390 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 19 | 2,754,713 - 2,783,271 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 19 | 2,705,712 - 2,734,354 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 19 | 2,705,711 - 2,734,354 | NCBI | | | | | Celera | 19 | 2,691,048 - 2,719,238 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | p13.3 | NCBI | | | | | HuRef | 19 | 2,524,858 - 2,552,844 (-) | NCBI | | HuRef | | | CHM1_1 | 19 | 2,754,295 - 2,782,944 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 19 | 2,730,001 - 2,758,560 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Sgta (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 10 | 80,879,905 - 80,896,105 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 10 | 80,879,909 - 80,896,015 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 10 | 81,044,071 - 81,060,271 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 10 | 81,044,075 - 81,060,181 (-) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 10 | 80,506,818 - 80,522,899 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 10 | 80,447,202 - 80,463,283 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 10 | 82,064,172 - 82,080,253 (-) | NCBI | | Celera | | | Cytogenetic Map | 10 | C1 | NCBI | | | | | cM Map | 10 | 39.72 | NCBI | | | | |
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Sgta (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955495 | 5,031,229 - 5,052,389 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955495 | 5,025,038 - 5,051,810 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SGTA (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 20 | 7,148,672 - 7,177,779 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 19 | 6,380,570 - 6,410,739 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 19 | 1,778,728 - 1,808,199 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 19 | 2,736,565 - 2,763,440 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 19 | 2,736,565 - 2,763,440 (-) | Ensembl | | | panPan2 | panpan1.1 |
|
SGTA (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 20 | 56,432,688 - 56,451,438 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 20 | 56,441,724 - 56,450,215 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 20 | 56,238,159 - 56,245,619 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 20 | 57,166,157 - 57,184,860 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 20 | 57,168,049 - 57,184,848 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 20 | 56,228,236 - 56,235,697 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 20 | 56,713,119 - 56,720,579 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 20 | 56,913,486 - 56,920,947 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Sgta (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024405118 | 216,218,214 - 216,235,331 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936588 | 1,598,164 - 1,616,599 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936588 | 1,599,453 - 1,616,480 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
SGTA (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 2 | 75,879,058 - 75,896,277 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 2 | 75,879,081 - 75,896,279 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 2 | 76,391,320 - 76,408,510 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
SGTA (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 6 | 2,534,398 - 2,562,306 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 6 | 2,534,376 - 2,548,604 (-) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666081 | 6,041,444 - 6,071,775 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Sgta (Heterocephalus glaber - naked mole-rat) |
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Sgta (Rattus rattus - black rat) |
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