Cited1 (Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1) - Rat Genome Database

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Gene: Cited1 (Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1) Rattus norvegicus
Analyze
Symbol: Cited1
Name: Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
RGD ID: 620781
Description: Predicted to enable several functions, including LBD domain binding activity; co-SMAD binding activity; and protein homodimerization activity. Involved in several processes, including branching involved in ureteric bud morphogenesis; negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis; and regulation of DNA-templated transcription. Located in cytoplasm. Orthologous to human CITED1 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1); INTERACTS WITH 6-propyl-2-thiouracil; aflatoxin B1; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cbp/p300-interacting transactivator 1; melanocyte-specific gene 1 protein; Msg1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X71,390,328 - 71,395,023 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX71,390,331 - 71,393,649 (-)EnsemblGRCr8
mRatBN7.2X67,350,376 - 67,355,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX67,350,373 - 67,355,162 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX68,833,741 - 68,838,437 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X72,333,977 - 72,338,676 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X69,895,104 - 69,899,803 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X72,128,996 - 72,133,692 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX72,128,994 - 72,133,692 (-)Ensemblrn6Rnor6.0
Rnor_5.0X72,970,882 - 72,975,577 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X90,301,067 - 90,305,762 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX67,703,821 - 67,708,586 (-)NCBICelera
RGSC_v3.1X90,374,502 - 90,379,195 (-)NCBI
Cytogenetic MapXq22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
cadmium sulfate  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl phthalate  (EXP)
diisobutyl phthalate  (EXP)
diisononyl phthalate  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
glycerol 2-phosphate  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (ISO)
manganese(II) chloride  (EXP)
methimazole  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mifepristone  (EXP)
Muraglitazar  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (EXP)
nitrofen  (EXP)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
pravastatin  (EXP,ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
serpentine asbestos  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sulfadimethoxine  (EXP)
Tesaglitazar  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
triptonide  (ISO)
troglitazone  (EXP)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
brain development  (ISO)
branching involved in ureteric bud morphogenesis  (IMP,ISO)
DNA-templated transcription  (IEA)
embryonic axis specification  (IDA)
kidney development  (ISO)
labyrinthine layer development  (ISO)
melanin biosynthetic process  (ISO,ISS)
melanocyte differentiation  (IBA,IEA,ISO,ISS)
morphogenesis of an epithelium  (ISO)
negative regulation of DNA-templated transcription  (IDA,IEA,ISO)
negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis  (IMP)
negative regulation of neuron apoptotic process  (IEA,ISO)
negative regulation of osteoblast differentiation  (ISO)
nucleocytoplasmic transport  (IEA,ISO)
pigmentation  (IEA,ISO,ISS)
placenta development  (ISO,ISS)
positive regulation of DNA-templated transcription  (IDA,IEA,ISO)
positive regulation of gene expression  (ISO,ISS)
positive regulation of transcription by RNA polymerase II  (IEA,ISO)
regulation of apoptotic process  (IEA,ISO)
regulation of DNA-templated transcription  (IEA)
regulation of kidney development  (IEP)
response to cAMP  (ISO,ISS)
response to cytokine  (ISO,ISS)
response to estrogen  (IEA,ISO)
response to insulin  (ISO,ISS)
response to interleukin-1  (ISO,ISS)
response to interleukin-11  (ISO,ISS)
response to interleukin-2  (ISO,ISS)
response to interleukin-4  (ISO,ISS)
response to interleukin-6  (ISO,ISS)
response to interleukin-9  (ISO,ISS)
response to lipopolysaccharide  (ISO,ISS)
response to parathyroid hormone  (ISO,ISS)
response to transforming growth factor beta  (IEA,ISO)
response to type II interferon  (ISO,ISS)
SMAD protein signal transduction  (IEA,ISO)
spongiotrophoblast layer development  (ISO)
transforming growth factor beta receptor signaling pathway  (IEA,ISO)
vasculogenesis  (ISO)

Cellular Component
cytoplasm  (IDA,IEA,ISO)
cytosol  (IEA,ISO,ISS)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. MRG1 expression in fibroblasts is regulated by Sp1/Sp3 and an Ets transcription factor. Han B, etal., J Biol Chem 2001 Mar 16;276(11):7937-42.
4. CITED1 expression in Wilms' tumor and embryonic kidney. Lovvorn HN, etal., Neoplasia. 2007 Jul;9(7):589-600.
5. Accumulation of malignant renal stem cells is associated with epigenetic changes in normal renal progenitor genes. Metsuyanim S, etal., Stem Cells. 2008 Jul;26(7):1808-17. doi: 10.1634/stemcells.2007-0322. Epub 2008 May 8.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Cited1 is a bifunctional transcriptional cofactor that regulates early nephronic patterning. Plisov S, etal., J Am Soc Nephrol. 2005 Jun;16(6):1632-44. Epub 2005 Apr 20.
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8901575   PMID:9434189   PMID:9707553   PMID:9811838   PMID:11434569   PMID:11581164   PMID:12477932   PMID:14673158   PMID:16864582   PMID:17047318   PMID:17615577   PMID:17938205  
PMID:18187554   PMID:18586071   PMID:21172805  


Genomics

Comparative Map Data
Cited1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X71,390,328 - 71,395,023 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX71,390,331 - 71,393,649 (-)EnsemblGRCr8
mRatBN7.2X67,350,376 - 67,355,072 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX67,350,373 - 67,355,162 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX68,833,741 - 68,838,437 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X72,333,977 - 72,338,676 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X69,895,104 - 69,899,803 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X72,128,996 - 72,133,692 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX72,128,994 - 72,133,692 (-)Ensemblrn6Rnor6.0
Rnor_5.0X72,970,882 - 72,975,577 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X90,301,067 - 90,305,762 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX67,703,821 - 67,708,586 (-)NCBICelera
RGSC_v3.1X90,374,502 - 90,379,195 (-)NCBI
Cytogenetic MapXq22NCBI
CITED1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X72,301,646 - 72,307,157 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX72,301,638 - 72,309,652 (-)Ensemblhg38GRCh38
GRCh37X71,521,496 - 71,527,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X71,438,225 - 71,443,515 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X71,304,522 - 71,309,811NCBI
CeleraX71,864,707 - 71,870,256 (-)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX65,276,211 - 65,281,593 (-)NCBIHuRef
CHM1_1X71,414,498 - 71,420,047 (-)NCBICHM1_1
T2T-CHM13v2.0X70,734,542 - 70,740,053 (-)NCBIT2T-CHM13v2.0
Cited1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X101,290,984 - 101,295,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX101,290,987 - 101,295,787 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X102,247,378 - 102,252,181 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX102,247,381 - 102,252,181 (-)Ensemblmm10GRCm38
MGSCv37X99,442,775 - 99,447,108 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X98,450,155 - 98,454,488 (-)NCBIMGSCv36mm8
CeleraX89,158,523 - 89,162,856 (-)NCBICelera
Cytogenetic MapXDNCBI
cM MapX45.25NCBI
Cited1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547511,722,452 - 11,725,067 (-)Ensembl
ChiLan1.0NW_00495547511,722,514 - 11,725,067 (-)NCBIChiLan1.0ChiLan1.0
CITED1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X71,974,744 - 71,980,354 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X71,978,357 - 71,983,957 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X61,537,949 - 61,543,545 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X71,621,785 - 71,627,300 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX71,621,785 - 71,625,702 (-)EnsemblpanPan2panpan1.1
CITED1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X56,327,104 - 56,332,608 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX56,327,182 - 56,332,047 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX47,153,226 - 47,158,855 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X57,381,392 - 57,387,023 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX57,381,398 - 57,386,186 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X55,289,501 - 55,295,129 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X56,693,279 - 56,698,903 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X56,542,007 - 56,547,638 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cited1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X45,586,788 - 45,592,476 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367621,387,346 - 1,391,967 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367621,387,354 - 1,392,955 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CITED1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX58,179,087 - 58,184,499 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X58,179,084 - 58,184,778 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X65,888,887 - 65,894,581 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CITED1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X62,126,383 - 62,131,919 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX62,126,320 - 62,130,220 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660653,975,650 - 3,981,184 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cited1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249032,596,049 - 2,601,315 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cited1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X60,034,985 - 60,038,206 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cited1
6 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:29
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000004263
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat

Markers in Region
PMC303371P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X71,391,277 - 71,391,618 (+)Marker Load Pipeline
mRatBN7.2X67,351,325 - 67,351,665 (+)MAPPERmRatBN7.2
Rnor_6.0X72,129,947 - 72,130,286NCBIRnor6.0
Rnor_5.0X72,971,832 - 72,972,171UniSTSRnor5.0
RGSC_v3.4X90,302,017 - 90,302,356UniSTSRGSC3.4
CeleraX67,704,771 - 67,705,110UniSTS
Cytogenetic MapXq31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 140 84 83 52 28 52 6 283 126 10 119 81 91 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000004263   ⟹   ENSRNOP00000004263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX71,390,331 - 71,391,607 (-)Ensembl
mRatBN7.2 EnsemblX67,350,387 - 67,355,162 (-)Ensembl
Rnor_6.0 EnsemblX72,128,994 - 72,133,692 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000076391   ⟹   ENSRNOP00000068239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX72,129,324 - 72,132,495 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077678   ⟹   ENSRNOP00000069515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX71,390,331 - 71,393,649 (-)Ensembl
mRatBN7.2 EnsemblX67,350,373 - 67,353,610 (-)Ensembl
Rnor_6.0 EnsemblX72,128,994 - 72,132,886 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142909   ⟹   ENSRNOP00000111880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX71,390,331 - 71,393,246 (-)Ensembl
RefSeq Acc Id: NM_172055   ⟹   NP_742052
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X71,390,328 - 71,395,023 (-)NCBI
mRatBN7.2X67,350,376 - 67,355,072 (-)NCBI
Rnor_6.0X72,128,997 - 72,133,692 (-)NCBI
Rnor_5.0X72,970,882 - 72,975,577 (-)NCBI
RGSC_v3.4X90,301,067 - 90,305,762 (-)RGD
CeleraX67,703,821 - 67,708,586 (-)RGD
Sequence:
RefSeq Acc Id: XM_006257098   ⟹   XP_006257160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X71,390,328 - 71,394,040 (-)NCBI
mRatBN7.2X67,350,381 - 67,354,184 (-)NCBI
Rnor_6.0X72,129,072 - 72,132,992 (-)NCBI
Rnor_5.0X72,970,882 - 72,975,577 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257099   ⟹   XP_006257161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X71,390,328 - 71,394,040 (-)NCBI
mRatBN7.2X67,350,376 - 67,354,184 (-)NCBI
Rnor_6.0X72,128,996 - 72,132,977 (-)NCBI
Rnor_5.0X72,970,882 - 72,975,577 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006257100   ⟹   XP_006257162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X71,390,328 - 71,394,515 (-)NCBI
mRatBN7.2X67,350,376 - 67,354,574 (-)NCBI
Rnor_6.0X72,128,996 - 72,133,210 (-)NCBI
Rnor_5.0X72,970,882 - 72,975,577 (-)NCBI
Sequence:
RefSeq Acc Id: NP_742052   ⟸   NM_172055
- UniProtKB: Q4V8P1 (UniProtKB/TrEMBL),   F7FI57 (UniProtKB/TrEMBL),   Q9Z1S6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257162   ⟸   XM_006257100
- Peptide Label: isoform X2
- UniProtKB: Q4V8P1 (UniProtKB/TrEMBL),   F7FI57 (UniProtKB/TrEMBL),   Q9Z1S6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257161   ⟸   XM_006257099
- Peptide Label: isoform X2
- UniProtKB: Q4V8P1 (UniProtKB/TrEMBL),   F7FI57 (UniProtKB/TrEMBL),   Q9Z1S6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006257160   ⟸   XM_006257098
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVK0 (UniProtKB/TrEMBL),   Q9Z1S6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000004263   ⟸   ENSRNOT00000004263
Ensembl Acc Id: ENSRNOP00000069515   ⟸   ENSRNOT00000077678
Ensembl Acc Id: ENSRNOP00000068239   ⟸   ENSRNOT00000076391
Ensembl Acc Id: ENSRNOP00000111880   ⟸   ENSRNOT00000142909

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JVK0-F1-model_v2 AlphaFold A0A0G2JVK0 1-241 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701885
Promoter ID:EPDNEW_R12408
Type:single initiation site
Name:Cited1_1
Description:Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminaldomain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X72,133,726 - 72,133,786EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620781 AgrOrtholog
BioCyc Gene G2FUF-2076 BioCyc
Ensembl Genes ENSRNOG00000003189 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004263 ENTREZGENE
  ENSRNOT00000004263.9 UniProtKB/TrEMBL
  ENSRNOT00000077678 ENTREZGENE
  ENSRNOT00000077678.3 UniProtKB/TrEMBL
  ENSRNOT00000142909.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.2200 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7446633 IMAGE-MGC_LOAD
InterPro CITED UniProtKB/TrEMBL
KEGG Report rno:64466 UniProtKB/TrEMBL
MGC_CLONE MGC:114254 IMAGE-MGC_LOAD
NCBI Gene 64466 ENTREZGENE
PANTHER CBP/P300-INTERACTING TRANSACTIVATOR 1 UniProtKB/TrEMBL
  CITED UniProtKB/TrEMBL
Pfam CITED UniProtKB/TrEMBL
PhenoGen Cited1 PhenoGen
RatGTEx ENSRNOG00000003189 RatGTEx
UniProt A0A0G2JVK0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LZH0_RAT UniProtKB/TrEMBL
  F7FI57 ENTREZGENE, UniProtKB/TrEMBL
  Q4V8P1 ENTREZGENE, UniProtKB/TrEMBL
  Q9Z1S6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Cited1  Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1  Msg1  melanocyte-specific gene 1 protein  Symbol and Name updated 1299863 APPROVED
2002-08-07 Msg1  melanocyte-specific gene 1 protein      Symbol and Name status set to provisional 70820 PROVISIONAL