Ptprg (protein tyrosine phosphatase, receptor type, G) - Rat Genome Database

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Gene: Ptprg (protein tyrosine phosphatase, receptor type, G) Rattus norvegicus
Analyze
Symbol: Ptprg
Name: protein tyrosine phosphatase, receptor type, G
RGD ID: 620774
Description: Predicted to enable identical protein binding activity and protein tyrosine phosphatase activity. Involved in negative regulation of neuron projection development. Located in extracellular space. Orthologous to human PTPRG (protein tyrosine phosphatase receptor type G); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein tyrosine phosphatase gamma; Protein tyrosine phosphatase, gamma (provisional HGM11 symbol); Ptpg; receptor-like protein tyrosine phosphatase gamma; receptor-type tyrosine-protein phosphatase gamma; RPTP gamma; RPTP gamma A; RPTP gamma B; RPTP gamma C; RPTP gamma S
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81515,298,669 - 15,982,581 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1515,302,133 - 15,982,668 (-)EnsemblGRCr8
mRatBN7.21512,871,706 - 13,552,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1512,871,721 - 13,554,094 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1515,000,445 - 15,679,945 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01515,958,897 - 16,638,385 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01514,213,696 - 14,893,219 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01512,926,056 - 13,633,839 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)Ensemblrn6Rnor6.0
Rnor_5.01516,953,275 - 17,647,626 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41514,449,352 - 15,130,760 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1512,868,965 - 13,547,381 (-)NCBICelera
RGSC_v3.11514,449,351 - 14,966,931 (-)NCBI
Cytogenetic Map15p15NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-tert-Octylphenol  (EXP)
4-vinylcyclohexene dioxide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
afimoxifene  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chrysene  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
inulin  (ISO)
irinotecan  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
leflunomide  (EXP,ISO)
melphalan  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methotrexate  (ISO)
methoxychlor  (EXP,ISO)
methylmercury chloride  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-nitrosomorpholine  (EXP)
nickel sulfate  (ISO)
niclosamide  (ISO)
okadaic acid  (ISO)
p-tert-Amylphenol  (EXP)
paracetamol  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
terbufos  (ISO)
Tesaglitazar  (EXP)
tetraphene  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Characterization of rat receptor-like protein tyrosine phosphatase gamma isoforms. Shintani T, etal., Biochem Biophys Res Commun 1997 Jan 13;230(2):419-25.
9. Receptor-like protein tyrosine phosphatase gamma (RPTPgamma), but not PTPzeta/RPTPbeta, inhibits nerve-growth-factor-induced neurite outgrowth in PC12D cells. Shintani T, etal., Dev Neurosci 2001;23(1):55-69.
Additional References at PubMed
PMID:15978577   PMID:19167335   PMID:20014386   PMID:21724833   PMID:23376485   PMID:23533145   PMID:23716698  


Genomics

Comparative Map Data
Ptprg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81515,298,669 - 15,982,581 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1515,302,133 - 15,982,668 (-)EnsemblGRCr8
mRatBN7.21512,871,706 - 13,552,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1512,871,721 - 13,554,094 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1515,000,445 - 15,679,945 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01515,958,897 - 16,638,385 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01514,213,696 - 14,893,219 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01512,926,056 - 13,633,839 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)Ensemblrn6Rnor6.0
Rnor_5.01516,953,275 - 17,647,626 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41514,449,352 - 15,130,760 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1512,868,965 - 13,547,381 (-)NCBICelera
RGSC_v3.11514,449,351 - 14,966,931 (-)NCBI
Cytogenetic Map15p15NCBI
PTPRG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38361,561,571 - 62,297,609 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl361,561,569 - 62,297,609 (+)Ensemblhg38GRCh38
GRCh37361,547,245 - 62,283,284 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36361,522,285 - 62,254,738 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34361,522,284 - 62,254,737NCBI
Celera361,560,149 - 62,297,663 (+)NCBICelera
Cytogenetic Map3p14.2NCBI
HuRef361,645,865 - 62,378,614 (+)NCBIHuRef
CHM1_1361,497,665 - 62,231,710 (+)NCBICHM1_1
T2T-CHM13v2.0361,604,735 - 62,341,118 (+)NCBIT2T-CHM13v2.0
Ptprg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391410,227,722 - 10,916,341 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1410,227,722 - 10,916,220 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381411,553,440 - 12,242,041 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1411,553,532 - 12,242,041 (+)Ensemblmm10GRCm38
MGSCv371412,386,067 - 13,074,553 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361410,347,279 - 11,031,196 (+)NCBIMGSCv36mm8
Celera147,168,551 - 7,867,137 (+)NCBICelera
Celera1415,457,844 - 15,462,854 (-)NCBICelera
Cytogenetic Map14A1NCBI
cM Map146.33NCBI
Ptprg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555173,675,748 - 3,739,618 (-)Ensembl
ChiLan1.0NW_0049555173,676,342 - 4,352,909 (-)NCBIChiLan1.0ChiLan1.0
PTPRG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2261,507,885 - 62,241,739 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1361,514,095 - 62,246,526 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0361,487,734 - 62,221,149 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1362,876,655 - 63,608,175 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl362,877,232 - 63,604,275 (+)EnsemblpanPan2panpan1.1
PTPRG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12028,777,306 - 29,481,097 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2028,778,386 - 29,481,145 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2028,705,294 - 29,408,229 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02029,011,902 - 29,715,647 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2029,011,286 - 29,715,645 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12028,497,557 - 29,200,144 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02028,855,762 - 29,559,818 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02028,955,575 - 29,659,297 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ptprg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118165,734,435 - 165,784,177 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366374,122,538 - 4,173,961 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366374,126,058 - 4,248,190 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1343,548,770 - 43,886,214 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11343,132,786 - 43,869,843 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21347,543,401 - 47,873,302 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12222,652,375 - 23,370,973 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2223,061,935 - 23,370,960 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041143,495,813 - 144,076,600 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptprg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248228,378,048 - 8,942,342 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ptprg
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11281,653,555 - 82,324,582 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ptprg
4787 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:22
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000042010
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat

Markers in Region
D15Rat136  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81515,360,028 - 15,360,210 (+)Marker Load Pipeline
mRatBN7.21512,929,603 - 12,929,785 (+)MAPPERmRatBN7.2
Rnor_6.01512,982,697 - 12,982,878NCBIRnor6.0
Rnor_5.01517,009,983 - 17,010,164UniSTSRnor5.0
RGSC_v3.41514,506,878 - 14,507,060RGDRGSC3.4
RGSC_v3.41514,506,879 - 14,507,060UniSTSRGSC3.4
Celera1512,925,256 - 12,925,437UniSTS
RGSC_v3.11514,506,878 - 14,507,060RGD
SHRSP x BN Map159.5698UniSTS
SHRSP x BN Map159.5698RGD
Cytogenetic Map15p16-p15UniSTS
D15Got18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,434,438 - 13,434,565 (+)MAPPERmRatBN7.2
Rnor_6.01513,500,629 - 13,500,755NCBIRnor6.0
Rnor_5.01517,516,160 - 17,516,286UniSTSRnor5.0
RGSC_v3.41515,012,985 - 15,013,112RGDRGSC3.4
RGSC_v3.41515,012,986 - 15,013,112UniSTSRGSC3.4
Celera1513,429,108 - 13,429,234UniSTS
RGSC_v3.11515,012,986 - 15,013,112RGD
RH 3.4 Map15110.0UniSTS
RH 3.4 Map15110.0RGD
RH 2.0 Map1562.3RGD
Cytogenetic Map15p16-p15UniSTS
D15Kyo1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,520,624 - 13,520,771 (+)MAPPERmRatBN7.2
Rnor_6.01513,602,281 - 13,602,425NCBIRnor6.0
Rnor_5.01517,616,068 - 17,616,212UniSTSRnor5.0
RGSC_v3.41515,099,202 - 15,099,346UniSTSRGSC3.4
Celera1513,515,813 - 13,515,957UniSTS
Cytogenetic Map15p16-p15UniSTS
RH133004  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01517,198,751 - 17,199,159NCBIRnor5.0
RGSC_v3.41514,701,554 - 14,701,954UniSTSRGSC3.4
Celera1513,116,466 - 13,116,866UniSTS
Cytogenetic Map15p16-p15UniSTS
BE102252  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,548,177 - 13,548,351 (+)MAPPERmRatBN7.2
Rnor_6.01513,629,831 - 13,630,004NCBIRnor6.0
Rnor_5.01517,643,618 - 17,643,791UniSTSRnor5.0
RGSC_v3.41515,126,752 - 15,126,925UniSTSRGSC3.4
Celera1513,543,373 - 13,543,546UniSTS
RH 3.4 Map1596.6UniSTS
Cytogenetic Map15p16-p15UniSTS
BE116836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,331,986 - 13,332,176 (+)MAPPERmRatBN7.2
Rnor_6.01513,398,010 - 13,398,199NCBIRnor6.0
Rnor_5.01517,413,541 - 17,413,730UniSTSRnor5.0
RGSC_v3.41514,910,301 - 14,910,490UniSTSRGSC3.4
Celera1513,326,770 - 13,326,959UniSTS
RH 3.4 Map15109.3UniSTS
Cytogenetic Map15p16-p15UniSTS
BF390487  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21513,387,062 - 13,387,232 (+)MAPPERmRatBN7.2
Rnor_6.01513,453,254 - 13,453,423NCBIRnor6.0
Rnor_5.01517,468,785 - 17,468,954UniSTSRnor5.0
RGSC_v3.41514,965,611 - 14,965,780UniSTSRGSC3.4
Celera1513,381,733 - 13,381,902UniSTS
RH 3.4 Map1596.9UniSTS
Cytogenetic Map15p16-p15UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 85 59 6 349 185 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000042010   ⟹   ENSRNOP00000039045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1515,302,133 - 15,982,668 (-)Ensembl
mRatBN7.2 Ensembl1512,871,721 - 13,554,094 (-)Ensembl
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088214   ⟹   ENSRNOP00000073305
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1515,302,133 - 15,982,668 (-)Ensembl
mRatBN7.2 Ensembl1512,871,721 - 13,164,493 (-)Ensembl
Rnor_6.0 Ensembl1512,926,167 - 13,228,607 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099333   ⟹   ENSRNOP00000095910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1515,302,133 - 15,357,765 (-)Ensembl
mRatBN7.2 Ensembl1512,871,721 - 12,927,418 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101353   ⟹   ENSRNOP00000087710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1515,302,133 - 15,982,668 (-)Ensembl
mRatBN7.2 Ensembl1512,871,721 - 13,554,094 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104654   ⟹   ENSRNOP00000094306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1513,021,876 - 13,553,071 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168996   ⟹   ENSRNOP00000107164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1515,302,133 - 15,982,668 (-)Ensembl
RefSeq Acc Id: NM_134356   ⟹   NP_599183
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,302,133 - 15,982,581 (-)NCBI
mRatBN7.21512,871,706 - 13,552,186 (-)NCBI
Rnor_6.01512,926,056 - 13,633,839 (-)NCBI
Rnor_5.01516,953,275 - 17,647,626 (-)NCBI
RGSC_v3.41514,449,352 - 15,130,760 (-)RGD
Celera1512,868,965 - 13,547,381 (-)RGD
Sequence:
RefSeq Acc Id: XM_063273945   ⟹   XP_063130015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,298,669 - 15,982,499 (-)NCBI
RefSeq Acc Id: XM_063273946   ⟹   XP_063130016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,298,669 - 15,982,499 (-)NCBI
RefSeq Acc Id: XM_063273947   ⟹   XP_063130017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,298,669 - 15,982,519 (-)NCBI
RefSeq Acc Id: XM_063273948   ⟹   XP_063130018
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,298,669 - 15,516,676 (-)NCBI
RefSeq Acc Id: XM_063273949   ⟹   XP_063130019
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,298,669 - 15,516,930 (-)NCBI
RefSeq Acc Id: XM_063273950   ⟹   XP_063130020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81515,298,669 - 15,360,145 (-)NCBI
RefSeq Acc Id: NP_599183   ⟸   NM_134356
- UniProtKB: F1LP13 (UniProtKB/TrEMBL),   Q8CIN3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039045   ⟸   ENSRNOT00000042010
Ensembl Acc Id: ENSRNOP00000073305   ⟸   ENSRNOT00000088214
Ensembl Acc Id: ENSRNOP00000087710   ⟸   ENSRNOT00000101353
Ensembl Acc Id: ENSRNOP00000095910   ⟸   ENSRNOT00000099333
Ensembl Acc Id: ENSRNOP00000094306   ⟸   ENSRNOT00000104654
RefSeq Acc Id: XP_063130017   ⟸   XM_063273947
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A6D9 (UniProtKB/TrEMBL),   Q8CIN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130016   ⟸   XM_063273946
- Peptide Label: isoform X2
- UniProtKB: Q8CIN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130015   ⟸   XM_063273945
- Peptide Label: isoform X1
- UniProtKB: Q8CIN3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130019   ⟸   XM_063273949
- Peptide Label: isoform X5
- UniProtKB: A0A0G2K561 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130018   ⟸   XM_063273948
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K561 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130020   ⟸   XM_063273950
- Peptide Label: isoform X6
- UniProtKB: A0A8I6ARJ1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000107164   ⟸   ENSRNOT00000168996
Protein Domains
Alpha-carbonic anhydrase   Fibronectin type-III   Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LP13-F1-model_v2 AlphaFold F1LP13 1-1372 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620774 AgrOrtholog
BioCyc Gene G2FUF-14349 BioCyc
Ensembl Genes ENSRNOG00000009419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042010 ENTREZGENE
  ENSRNOT00000042010.7 UniProtKB/TrEMBL
  ENSRNOT00000088214.3 UniProtKB/TrEMBL
  ENSRNOT00000099333 ENTREZGENE
  ENSRNOT00000099333.2 UniProtKB/TrEMBL
  ENSRNOT00000101353 ENTREZGENE
  ENSRNOT00000101353.2 UniProtKB/TrEMBL
  ENSRNOT00000168996.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.10.200.10 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro alpha_CARP_receptor-type UniProtKB/TrEMBL
  Carbonic_anhydrase_a UniProtKB/TrEMBL
  Carbonic_anhydrase_a_sf UniProtKB/TrEMBL
  Fibronectin_type3 UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Protein-Tyr_Phosphatase UniProtKB/TrEMBL
  Tyr/Dual-specificity_Pase UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_rcpt/non-rcpt UniProtKB/TrEMBL
KEGG Report rno:171357 UniProtKB/TrEMBL
NCBI Gene 171357 ENTREZGENE
PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE UniProtKB/TrEMBL
  RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE GAMMA UniProtKB/TrEMBL
Pfam Carb_anhydrase UniProtKB/TrEMBL
  fn3 UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PharmGKB PTPRG RGD
PhenoGen Ptprg PhenoGen
PRINTS PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE ALPHA_CA_2 UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009419 RatGTEx
SMART Carb_anhydrase UniProtKB/TrEMBL
  FN3 UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP Euk_COanhd UniProtKB/TrEMBL
  FN_III-like UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A0G2K561 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6D9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ARJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LMX2_RAT UniProtKB/TrEMBL
  F1LP13 ENTREZGENE, UniProtKB/TrEMBL
  Q8CIN2 ENTREZGENE, UniProtKB/TrEMBL
  Q8CIN3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2003-04-09 Ptprg  protein tyrosine phosphatase, receptor type, G      Symbol and Name updated 629477 APPROVED
2003-03-06 Ptprg  protein tyrosine phosphatase, receptor type, G  Ptpg  Protein tyrosine phosphatase, gamma (provisional HGM11 symbol)  Data merged from RGD:3446 628472 PROVISIONAL
2002-08-07 Ptprg  protein tyrosine phosphatase, receptor type, G      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Ptpg  Protein tyrosine phosphatase, gamma (provisional HGM11 symbol)      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in brain, kidney, lung, and heart 633859