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Gene: Chd8 (chromodomain helicase DNA binding protein 8) Rattus norvegicus

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Symbol:

Chd8

Name:

chromodomain helicase DNA binding protein 8

RGD ID:

620696

Description:

Enables armadillo repeat domain binding activity and beta-catenin binding activity. Involved in negative regulation of DNA-templated transcription and negative regulation of canonical Wnt signaling pathway. Located in nucleus. Part of protein-containing complex. Orthologous to human CHD8 (chromodomain helicase DNA binding protein 8); PARTICIPATES IN Wnt signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ATP-dependent helicase CHD8; axis duplication inhibitor; beta-catenin binding protein; CHD-8; chromodomain-helicase-DNA-binding protein 8; duplin; Loc65027

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHD8 (chromodomain helicase DNA binding protein 8)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Chd8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chd8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHD8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHD8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chd8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHD8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHD8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chd8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Chd8 (chromodomain helicase DNA binding protein 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CHD8 (chromodomain helicase DNA binding protein 8)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Chd8 (chromodomain helicase DNA binding protein 8)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	chd8 (chromodomain helicase DNA binding protein 8)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	chd-7	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	chd-7	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kis	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	kis	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chd8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Allele / Splice:

Chd8^em1Mcwi

Genetic Models:

LE-Chd8^em1Mcwi

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	27,379,285 - 27,438,959 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	27,379,285 - 27,417,851 (-)	Ensembl				GRCr8
mRatBN7.2	15	24,905,789 - 24,965,461 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	24,905,789 - 24,951,285 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	27,678,019 - 27,716,742 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	28,632,597 - 28,671,160 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	26,885,536 - 26,924,098 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	28,612,932 - 28,672,574 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	28,612,932 - 28,672,569 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	32,423,198 - 32,482,762 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	27,642,767 - 27,704,443 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	25,209,591 - 25,269,314 (-)	NCBI		Celera
RGSC_v3.1	15	27,684,891 - 27,696,816 (-)	NCBI
Cytogenetic Map	15	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

anxiety disorder (ISO)

autism spectrum disorder (ISO,ISS)

autistic disorder (ISO)

congenital ptosis (ISO)

developmental and epileptic encephalopathy 11 (ISO)

Developmental Disease (ISO)

Facies (ISO)

gastrointestinal system disease (ISO)

genetic disease (ISO)

Intellectual Developmental Disorder with Autism and Macrocephaly (ISO)

intellectual disability (ISO)

Macrocephaly (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

ammonium chloride (EXP)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

clobetasol (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

finasteride (EXP)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (ISO)

indometacin (ISO)

lead diacetate (ISO)

methidathion (ISO)

methimazole (EXP)

nitrates (ISO)

ochratoxin A (EXP)

ozone (ISO)

phenobarbital (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

rac-lactic acid (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sulindac (EXP)

testosterone enanthate (ISO)

triphenyl phosphate (ISO)

triticonazole (EXP)

troglitazone (ISO)

tungsten (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IBA,IEA,ISO)

chromatin organization (IEA)

chromatin remodeling (IBA,IEA,ISO,ISS)

digestive tract development (IBA,IEA,ISO)

DNA-templated transcription (IEA)

in utero embryonic development (ISO)

long-term memory (ISO)

mRNA processing (IEA,ISO)

negative regulation of apoptotic process (IEA,ISO,ISS)

negative regulation of canonical Wnt signaling pathway (IBA,IDA,ISO)

negative regulation of DNA-templated transcription (IBA,IDA,IEA,ISO)

negative regulation of fibroblast apoptotic process (ISO)

negative regulation of transcription by RNA polymerase II (IEA,ISO)

negative regulation of Wnt signaling pathway (IDA,IEA)

positive regulation of DNA-templated transcription (IEA,ISO,ISS)

positive regulation of transcription by RNA polymerase II (IEA,ISO,ISS)

positive regulation of transcription by RNA polymerase III (IEA,ISO,ISS)

prepulse inhibition (ISO)

regulation of gene expression (ISO)

social behavior (ISO)

startle response (ISO)

Wnt signaling pathway (IEA)

Cellular Component

chromatin (IBA)

MLL1 complex (IBA,IEA,ISO,ISS)

nucleoplasm (IEA,ISO)

nucleus (IBA,IDA,IEA,ISO)

protein-containing complex (IDA,IEA,ISO)

Molecular Function

armadillo repeat domain binding (IPI)

ATP binding (IEA,ISO,ISS)

ATP hydrolysis activity (IBA,IEA)

ATP-dependent activity, acting on DNA (IEA)

ATP-dependent chromatin remodeler activity (IBA,IEA,ISO,ISS)

beta-catenin binding (IDA,IEA,ISO)

chromatin binding (IBA,IEA,ISO)

DNA binding (IBA,IEA,ISO,ISS)

DNA helicase activity (IEA)

helicase activity (IEA)

histone binding (IBA,IEA,ISO,ISS)

histone H3K4me3 reader activity (IEA,ISO,ISS)

hydrolase activity (IEA)

nucleotide binding (IEA)

p53 binding (IEA,ISO,ISS)

protein binding (IPI,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Wnt signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Nuclear localization of Duplin, a beta-catenin-binding protein, is essential for its inhibitory activity on the Wnt signaling pathway.	Kobayashi M, etal., J Biol Chem. 2002 Feb 22;277(8):5816-22. Epub 2001 Dec 13.
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
6.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
7.	GOA pipeline	RGD automated data pipeline
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	A novel beta-catenin-binding protein inhibits beta-catenin-dependent Tcf activation and axis formation.	Sakamoto I, etal., J Biol Chem 2000 Oct 20;275(42):32871-8.
11.	Suppression of STAT3 activity by Duplin, which is a negative regulator of the Wnt signal.	Yamashina K, etal., J Biochem. 2006 Feb;139(2):305-14.

Additional References at PubMed

PMID:15367660	PMID:15960975	PMID:17938208	PMID:18378692	PMID:19151705	PMID:20453063	PMID:22083958	PMID:23071553	PMID:24998929	PMID:25294932	PMID:27602517	PMID:29920279

Genomics

Comparative Map Data

Chd8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	27,379,285 - 27,438,959 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	27,379,285 - 27,417,851 (-)	Ensembl				GRCr8
mRatBN7.2	15	24,905,789 - 24,965,461 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	24,905,789 - 24,951,285 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	27,678,019 - 27,716,742 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	28,632,597 - 28,671,160 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	26,885,536 - 26,924,098 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	28,612,932 - 28,672,574 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	28,612,932 - 28,672,569 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	32,423,198 - 32,482,762 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	27,642,767 - 27,704,443 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	25,209,591 - 25,269,314 (-)	NCBI		Celera
RGSC_v3.1	15	27,684,891 - 27,696,816 (-)	NCBI
Cytogenetic Map	15	p14	NCBI

CHD8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	21,385,199 - 21,456,123 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	21,385,194 - 21,456,126 (-)	Ensembl			hg38	GRCh38
GRCh37	14	21,853,358 - 21,924,282 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	20,923,198 - 20,975,244 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	14	1,718,849 - 1,770,858 (-)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	1,973,207 - 2,025,186 (-)	NCBI		HuRef
CHM1_1	14	21,855,022 - 21,906,934 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	15,582,676 - 15,653,513 (-)	NCBI		T2T-CHM13v2.0

Chd8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	52,435,608 - 52,495,499 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	52,435,608 - 52,495,237 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	52,198,151 - 52,258,042 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	52,198,151 - 52,257,780 (-)	Ensembl			mm10	GRCm38
MGSCv37	14	52,817,826 - 52,857,247 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	51,120,096 - 51,159,523 (-)	NCBI		MGSCv36	mm8
Celera	14	49,182,118 - 49,221,458 (-)	NCBI		Celera
Cytogenetic Map	14	C2	NCBI
cM Map	14	26.84	NCBI

Chd8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955550	2,115,649 - 2,175,181 (-)	Ensembl
ChiLan1.0	NW_004955550	2,115,649 - 2,175,687 (-)	NCBI	ChiLan1.0	ChiLan1.0

CHD8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	22,840,472 - 22,911,642 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	22,056,959 - 22,128,117 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	2,202,847 - 2,274,012 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	20,281,422 - 20,326,361 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	20,281,422 - 20,326,361 (-)	Ensembl			panPan2	panpan1.1

CHD8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	18,430,601 - 18,492,564 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	18,431,019 - 18,491,920 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	18,915,263 - 18,977,048 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	18,689,452 - 18,730,186 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	18,689,459 - 18,736,281 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	18,371,825 - 18,433,622 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	18,427,678 - 18,489,656 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	18,556,498 - 18,618,517 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Chd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	32,636,869 - 32,698,700 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936880	546,236 - 608,080 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936880	546,250 - 608,061 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHD8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	77,719,582 - 77,780,146 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	77,719,476 - 77,780,148 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	83,061,334 - 83,121,484 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHD8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	21,856,434 - 21,924,761 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	21,856,263 - 21,924,787 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666059	24,505,797 - 24,574,122 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chd8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624825	7,411,629 - 7,474,526 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624825	7,411,629 - 7,475,111 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Chd8
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	71,633,621 - 71,692,242 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Chd8
653 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	42
Count of miRNA genes:	40
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000022593
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
5684946	Bss98	Bone structure and strength QTL 98	3.9	0.0026	tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	15	1	39411584	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	22728353	42072050	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	32342855	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
5685002	Bss103	Bone structure and strength QTL 103	2.8		tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	15	16911521	32439851	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat

Markers in Region

WI-14045

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	24,905,800 - 24,905,927 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	28,612,942 - 28,613,068	NCBI	Rnor6.0
Rnor_5.0	15	32,423,209 - 32,423,335	UniSTS	Rnor5.0
RGSC_v3.4	15	27,642,777 - 27,642,903	UniSTS	RGSC3.4
Celera	15	25,209,601 - 25,209,727	UniSTS
Cytogenetic Map	15	p14	UniSTS

BF393768

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	24,911,588 - 24,911,757 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	28,618,729 - 28,618,897	NCBI	Rnor6.0
Rnor_5.0	15	32,428,996 - 32,429,164	UniSTS	Rnor5.0
RGSC_v3.4	15	27,648,564 - 27,648,732	UniSTS	RGSC3.4
Celera	15	25,215,388 - 25,215,556	UniSTS
Cytogenetic Map	15	p14	UniSTS

RH135273

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	24,912,875 - 24,913,080 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	28,620,016 - 28,620,220	NCBI	Rnor6.0
Rnor_5.0	15	32,430,283 - 32,430,487	UniSTS	Rnor5.0
RGSC_v3.4	15	27,649,851 - 27,650,055	UniSTS	RGSC3.4
Celera	15	25,216,675 - 25,216,879	UniSTS
Cytogenetic Map	15	p14	UniSTS

Genetic Models

This gene Chd8 is modified in the following models/strains:

LE-Chd8^em1Mcwi

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001347661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_022933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251909	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251910	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251911	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC118113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF169825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000022593 ⟹ ENSRNOP00000022593

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	27,379,285 - 27,417,851 (-)	Ensembl
mRatBN7.2 Ensembl	15	24,905,789 - 24,944,357 (-)	Ensembl
Rnor_6.0 Ensembl	15	28,612,932 - 28,672,530 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087722 ⟹ ENSRNOP00000071948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	27,379,285 - 27,417,851 (-)	Ensembl
mRatBN7.2 Ensembl	15	24,905,789 - 24,944,357 (-)	Ensembl
Rnor_6.0 Ensembl	15	28,612,954 - 28,672,569 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096813 ⟹ ENSRNOP00000096922

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	24,932,068 - 24,951,285 (-)	Ensembl

RefSeq Acc Id:

NM_001347661 ⟹ NP_001334590

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	27,379,285 - 27,417,851 (-)	NCBI
mRatBN7.2	15	24,905,789 - 24,944,357 (-)	NCBI

RefSeq Acc Id:

XM_006251908 ⟹ XP_006251970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	27,379,288 - 27,438,958 (-)	NCBI
mRatBN7.2	15	24,905,791 - 24,965,461 (-)	NCBI
Rnor_6.0	15	28,612,932 - 28,672,573 (-)	NCBI
Rnor_5.0	15	32,423,198 - 32,482,762 (-)	NCBI

Sequence:

show sequence

AGCATGGAGGACTAGCAAGCTTGCTTGCGGCGAGGGTTGGCCGTGCTCCGCCGGAAGGCGCCTT
GTTCTCCCGGACGGTGGGTTGCAACTCTTGCCCGGGGAAGGAAGCTGCAGGACTGGCTCAGGAG
TTCCATCTTCTCCCTCTGAAGACTTAGCTGTCTTGCTCCATGAAGTTCAGGACAATCTGACATG
CCCTTGATTCTTGTCTCTTCATTTGAAGAATAGTCCTCATCCATTGTGTACATTTTTTTGTTAA
TAGGGAAGGGGAGGGGAGAAAGAGTTCCCCCCCTCCCCTTCCCTCCCCAGAACTTCAACAAATA
TCCTTTATTACTTTACCAAGATGGCAGACCCCATCATGGATCTGTTTGATGACCCAAACTTATT
TGGCCTGGATTCTTTGACTGATGACAGCTTTAATCAGGTCACTCAAGACCCCATTGAAGAAGCA
CTTGGACTGCCAAGTTCTCTGGACTCCTTGGATCAGATGAACCAAGATGGTGGAAGTGGTGATG
TGGGGAATTCATCAGCAAGTGACCTGGTTCCCCCACCAGAGGAAACAGCTTCCACTGAACTTCC
CAAAGAATCCACAGCTCCAGCTCCAGAATCCTTAACCTTGCATGATTATACCACTCAGCCCACC
AGCCAGGAGCAGCCAGCCCAACCTGTCTTGCAGACATCAACACCAACATCAGGACTTTTGCAGG
TCTCTAAGAGCCAGGAGATCCTGAGCCAAGGGAATCCTTTCATGGGTGTCTCTGCCACAGCTGT
CTCCCCCAGTAATACTGGAGGACAGCCATCTCAGTCAGCTCCTAAGATTGTTATTCTTAAAGCT
CCACCAAACTCCTCAGTCACAGGTGCCCATGTGGCACAAATTCAGGCCCAAGGTATCACCAGTA
CAGCTCAGCCCCTAGTGGCTGGCACAGCCAATGGTGGAAAAGTCACTTTTACCAAAGTGCTTAC
TGGTACACCCCTCCGACCAGGTGTATCCATTGTCTCTGGTAATACAGTGCTGGCCACGAAGGTC
CCTGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAGCAGCTAGTTC
TCCAGCCAGTTAAGGGTTCCGCTCCTGCTGGAAATCCCGGGGCTACCGGGCCCCCCCTGAAGCC
TGCAGTTACACTGACATCTACACCTGCCCAGGGTGAATCGAAACGCATCACTTTGGTCCTTCAG
CAGCCACAGTCCGGAGGTCCCCAAGGACATCGGCATGTTGTGTTAGGGAGTCTACCCGGCAAGA
TAGTGTTACAGGGCAACCAACTGGCAGCCTTGACTCAAGCCAAGAGTGCTCAGGGGCAGCCTGC
CAAAGTAGTCACCATCCAACTGCAGGTGCAGCAGCCACAGCAAAAGATCCAGATTGTACCACAG
CCCCCATCATCACAGCCACAGCCACAGCCGCCACCCTCAGCCCAACCATTGACCCTGTCCTCTG
TACAGCAGGCTCAGATAATGGGACCAGGCCAAAACCCAGGACAGAGACTTTCTGTACCGCTCAA
GATGGTGCTGCAGCCACAGGCTGGCTCTTCTCAGGGAGCCTCTTCTGGACTCTCTGTGGTTAAA
GTTCTAAGTGCCAGTGAAGTGGCAGCCCTGTCATCACCAGCAAGCTGTGCCCCTCACACTGCAG
GGAAGACTGGAATGGAGGAGAACCGCAGGCTTGAGCACCAGAAAAAGCAAGAAAAAGCAAATCG
GATTGTGGCAGAGGCCATTGCTAGGGCCCGGGCCAGGGGTGAGCAAAACATACCTCGAGTCCTG
AATGAGGATGAGCTGCCTAGTGTCCGGCCAGAAGAGGAGGGTGAAAAGAAACGCAGGAAGAAGA
GCAGTGGAGAAAGGCTGAAGGAAGAGAAGCCAAAGAAAAGCAAGACTGCTGCTGCCTCCAAAAC
AAAGGGCAAGAGTAAGCTAAACACCATCACTCCTGTAGTGGGCAAAAAGAGAAAGCGTAACACA
TCGTCTGACAACTCTGATGTGGAGGTCATGCCTGCACAGTCGCCCCGGGAGGACGAAGAGAGCA
GCATCCAGAAGAGACGTTCAAACCGCCAAGTTAAGCGAAAAAAATATACAGAGGACCTGGATAT
AAAGATAACAGATGATGAAGAGGAGGAGGAGGTCGATGTTACTGGTCCAATAAAACCCGAGCCC
ATCCTCCCAGAACCAGTGCCAGAGCCTGATGGGGAGACTCTGCCTTCCATGCAGTTCTTTGTGG
AGAATCCCAGTGAAGAAGACGCAGCTATTGTGGACAAAGTGCTTTCCATGCGAGTTGTGAAGAA
AGAGCTTCCTTCTGGACAGTACACTGAGGCTGAGGAATTCTTTGTCAAGTACAAGAACTACTCC
TATCTGCACTGTGAATGGGCAACTATCTCCCAGCTGGAGAAGGACAAGAGGATCCATCAGAAGC
TAAAGCGCTTCAAGACGAAAATGGCTCAGATGAGGCACTTCTTTCATGAAGATGAAGAGCCTTT
CAATCCAGACTACGTCGAGGTGGACAGGATACTGGACGAGTCTCACAGTGTGGACAAGGATAAT
GGTGAGCCTGTAATCTACTACCTGGTAAAATGGTGCTCTCTGCCCTATGAGGACAGTACGTGGG
AGCTAAAAGAGGATGTTGACGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCATCC
AGAACTCAAAAGGGTGAATCGTCCACAGGCAAATGCCTGGAAGAAATTGGAGTTGTCACATGAA
TATAAAAACAGAAACCAATTACGGGAGTATCAGTTAGAAGGGGTCAACTGGCTTCTCTTTAATT
GGTATAACAGGCAGAACTGCATCCTGGCTGATGAAATGGGATTAGGCAAAACCATTCAGTCCAT
TGCCTTCTTGCAGGAGGTATATAATGTGGGCATCCATGGTCCCTTTTTGGTCATTGCTCCATTG
TCCACCATTACTAACTGGGAGCGAGAATTTAATACCTGGACAGAGATGAACACTATTGTGTACC
ATGGCAGCCTGGCCAGCCGGCAGATGATTCAGCAATATGAAATGTACTGTAAAGATTCACGGGG
TCGCCTCATCCCAGGTGCATATAAGTTTGATGCCTTGATCACCACTTTTGAGATGATTTTGTCA
GACTGTCCTGAACTTCGTGAAATTGAATGGCGTTGTGTTATCATTGATGAAGCCCATCGGCTAA
AGAACCGTAATTGTAAGCTACTCGATAGCCTCAAGCACATGGACCTGGAGCATAAAGTGTTACT
TACAGGAACACCATTGCAAAATACTGTAGAGGAGCTGTTCAGCCTACTTCATTTCTTGGAACCT
TCTCAGTTTCCCTCAGAATCAGAATTCCTTAAGGATTTTGGGGATCTGAAGACAGAGGAGCAGG
TTCAAAAGCTTCAGGCCATTCTAAAGCCAATGATGCTGAGAAGACTCAAAGAGGATGTTGAAAA
GAATTTGGCTCCCAAACAGGAGACTATTATTGAAGTAGAGCTGACCAACATCCAGAAGAAATAC
TACAGAGCTATTTTAGAGAAGAATTTCTCCTTCCTTTCCAAAGGAGCAGGGCATACCAATATGC
CTAACCTCCTGAACACGATGATGGAGTTACGCAAGTGCTGCAACCACCCATACCTCATCAATGG
TGCAGAAGAGAAAATCCTGATGGAATTTCGGGAAGCTTGCCATATTATACCTCAAGATTTCCAT
CTGCAGGCCATGGTTCGGTCAGCTGGCAAATTAGTTCTTATTGACAAGTTACTTCCAAAGCTTA
AAGCTGGTGGCCATAAAGTTCTGATCTTCTCCCAGATGGTACGCTGTCTAGATATTCTGGAGGA
TTATCTGATCCAGAGGAGGTACTTATACGAACGCATTGATGGGCGAGTTAGAGGCAACCTTCGA
CAAGCTGCTATCGACCGCTTTAGCAAGCCTGACTCAGACCGCTTTGTCTTCTTGCTATGTACCC
GTGCTGGTGGACTTGGTATTAATCTTACAGCTGCTGATACCTGTATTATTTTTGATTCAGACTG
GAATCCACAGAATGACCTGCAGGCCCAAGCACGTTGTCATCGCATTGGACAGAGCAAAGCTGTA
AAGGTGTACCGACTCATCACTCGCAATTCCTACGAGAGAGAGATGTTTGATAAAGCTAGCCTCA
AGTTGGGGCTGGACAAAGCTGTGCTTCAGTCCATGAGTGGTCGGGATGGCAACATTACTGGAAT
TCAACAGTTCTCCAAGAAAGAGATTGAAGATCTCTTAAGGAAAGGTGCATATGCAGCCATAATG
GAGGAAGACGATGAGGGTTCTAAGTTTTGTGAAGAGGACATAGATCAGATCTTGCTGAGACGGA
CTACAACCATCACTATTGAGTCTGAAGGGAAAGGGTCTACTTTTGCCAAGGCAAGCTTTGTTGC
TTCTGAAAATAGGACAGATATTTCCCTGGATGATCCAAACTTTTGGCAAAAATGGGCCAAAAAG
GCAGACCTAGACATGGATCTGCTGAATAGTAAGAATAACTTAGTGATTGATACACCACGAGTTC
GGAAACAGACTCGACACTTCAGCACTCTAAAAGATGACGACCTGGTTGAGTTTTCTGATTTAGA
AAGTGAAGATGATGAACGTCCCCGTTCCCGAAGACATGACCGTCATCACACCTATGGGCGCACT
GACTGCTTTCGGGTAGAAAAACATCTCCTGGTATATGGTTGGGGACGTTGGAGAGATATTCTGT
CTCATGGACGATTTAAGCGGCGCATGACTGAAAGAGATGTGGAGACAATATGCCGAGCCATCCT
TGTGTACTGTCTTCTACACTACCGTGGGGATGAAAACATCAAAAGCTTCATTTGGGACTTGATT
AGCCCTGCTGAAAATGGCAAGACAAAAGAATTGCAGAATCATTCAGTCTTCCATGTCTCCCCTT
TCCCAGGTCTGTCTATCCCTGTGCCCCGTGGGCGTAAGGGGAAAAAAGTGAAGTCACAAAGTAC
TTTTGACATTCATAAGGCAGACTGGATCCGGAAATATAACCCTGATACTCTGTTCCAAGACGAG
AGCTATAAGAAGCACTTGAAACATCAGTGTAACAAGGTACTGTTGAGAGTACGGATGCTGTACT
ACCTGAGACAGGAGGTCATTGGAGACCAAGCAGAGAAGGTGTTAGGGGGCGCCATAGCCAGTGA
GATTGACATATGGTTCCCAGTAGTGGATCAGCTGGAGGTTCCAACAACATGGTGGGATAGTGAG
GCTGACAAATCCCTGCTCATTGGCGTTTTTAAGCATGGCTATGAAAAATACAATACCATGAGGG
CAGACCCTGCCTTGTGTTTCCTGGAAAAAGCTGGCAGGCCAGATGACAAAGCCATTGCAGCGGA
GCACAGAGTTCTGGATAACTTCTCCGACCTGGTAGAAGGGATTGACTTTGATAAGGATTGTGAA
GATCCTGAATATAAACCCCTTCAGGGTCCCCCAAAGGACCCGGATGATGAGGGTGATCCCTTGA
TGATGATGGATGAGGAGATCTCAGTCATTGACGGAGATGAAGCCCCGGTGACTCAACAGCCAGG
GCATTTATTCTGGCCTCCAGGCTCTGCCCTCACAGCTAGGCTCCGCCGCCTGGTAACCGCCTAT
CAACGCAGCTACAAGAGAGAACAAATGAAGATAGAGGCTGCGGAGCGTGGGGACCGGAGACGCC
GACGTTGTGAAGCGGCCTTTAAGCTCAAAGAAATTGCAAGGCGGGAAAAACAACAACGATGGAC
ACGGCGCGAGCAAACTGATTTCTATCGAGTAGTGTCTACCTTTGGGGTAGAGTACGACCCTGAC
AACATGCAGTTTCACTGGGATCGCTTCCGTACTTTTGCTCGCCTGGACAAAAAAACAGATGAAA
GCCTTACCAAGTACTTCCATGGTTTTGTGGCCATGTGTAGACAAGTGTGCCGCCTTCCCCCAGC
TGCTGGTGATGAACCTCCAGATCCTAATCTGTTTATTGAGCCCATCACTGAAGAGAGAGCATCA
CGGACTCTCTACCGAATCGAGTTGCTTCGACGCTTACGGGAACAAGTTTTATGCCACCCCCTTT
TAGAAGATCGGCTGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCCAAATGGTGGGAACCTGT
CCGTCACGATGGGGAGCTCCTCCGAGGAGCAGCCCGCCATGGGGTGAGCCAAACAGACTGCAAC
ATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTATATGCAGAACCATCAGG
CAGGAGCATCAGCTGCATCCCTGTCACGATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTC
ACGCACTGCTTCACCATCACCCCTGCGCCCAGATGTTCCTGCTGAAAAGTCACCTGAGGAGAAT
GCTGTTCAGGTCCCCAGTCTGGACAGTCTGACTTTAAAACTAGAGGATGAGGTGGTGGCTAGGA
GCCGACTCACCCCACAAGACTATGAAATTCGTGTAGCCTCTTCAGATACAGCCCCTCTGTCCCG
GAGTGTTCCGCCAGTCAAACTGGAGGATGACGATGATTCAGACTCTGAGCTGGACTTGAGCAAG
TTGTCACCATCGTCCTCTTCATCTTCATCCTCCTCCAGCTCCAGCTCCAGCAGTGATGAGAGTG
AAGATGAGAAGGAAGAGAAGTTAACTGCTGACCGGTCCCGCCCAAAGCTCTATGATGAAGAGAG
CCTTCTGTCCCTTACTATGTCCCAAGATGGATTCCCAAATGAAGATGGAGAACAAATGACCCCT
GAGTTGCTGCTGCTGCAGGAAAGACAAAGAGCCTCTGAATGGCCCAAGGATCGTGTTCTGATAA
ACCGCATTGACCTCGTCTGCCAGGCTGTACTCTCAGGGAAATGGCCTTCTAACCGCCGGAGCCA
GGAAATGACAACAGGAGGAATTTTGGGGCCAGGAAACCATTTATTAGACAGTCCCTCTTTGACC
CCAGGAGAATATGGGGACTCTCCGGTCCCCACACCACGAAGCAGCAGTGCAGCTTCCATGGTAG
AGGAAGAAGCATCTGCGGTCACCACAGCAGCAGCCCAATTTACTAAACTTCGGCGAGGCATGGA
CGAGAAAGAGTTTACAGTTCAGATCAAAGATGAAGAAGGATTGAAGTTAACATTCCAGAAGCAT
AGATTGATGGCTAATGGTGTAATGGGAGATGGACATCCACTGTTTCATAAGAAGAAGGGGAACA
GGAAAAAGCTAGTAGAGCTGGAGGTGGAGTGCATGGAAGAGCCTAATCACCTTGATGTGGACCT
GGAGACCCGGATCCCTGTCATCAATAAGGTGGATGGTACTTTGCTGGTGGGTGATGAGGCCCCT
CGCCGGGCGGAGCTGGACATGTGGTTACAGGGTCATCCAGAGTTTGCTGTTGATCCCCGATTTC
TAGCGTATATGGAGGAACGTAGAAAACAGAAGTGGCAGAGATGTAAAAAAAATAATAAGACAGA
ATTGAACTGTTTGGGAATGGAACCAGTCCAGCCAGCCAACTCTAGAAATGGGAAAAAGGGTCAC
TATGCTGAAACTGCGTTCAACCGGGTTTTGCCAGGGCCTATTGCACCAGAAAACAGCAAGAAAC
GGGTCCGCAGGACAAGACCAGACCTTTCTAAGATGATGGCCCTGATGCAGGGTGGAAGCACTGG
GTCCCTATCTCTGCATAACACCTTTCAACACAGCAGTAGTAACCTACAGTCTGTGTCGTCTCTG
GGTCACAGCAGTGCCACTTCTGCATCTCTGCCTTTCATGCCGTTTGTGATGGGTGGTGCAGCAG
CACCCCCTCATGTAGACTCCAGCACCATGCTTCATCATCACCACCACCACCCCCACCCCCACCA
TCACCACCATCACCATCCAGGCTTGAGAACCACTGGCTACCCTTCTTCACCAGCTACTACCACC
TCTGGTACTGCCTTGCGGTTACCAACACTGCAGCATGAGGACGATGATGAAGAGGAGGATGAAG
ATGATGATGATTTATCTCAGGGCTATGATAGCTCAGAAAGGGACTTCTCACTCATTGATGACCC
TATGATGCCAGCCAACTCAGACTCCAGTGATGATGCTGACGACTGAAGCCCTAATATAGACCCG
TGCTGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGGGGCAGG
GAACAATATGGGGAAACCCAAGACTTCAGGAGGTGAAAAGGAAAAGAAAAAAAAAAGGAAAAAA
AAAAAAACAAAAAACTCGTACCCGATTGCTCCCAGTTTTGAGAGGATTGGGTGGGCAGGGGAAC
TCCTAAAAAATAATAAATGACCACTTCCTCGTTTCTGGGGGAGCAAAGGAGCTTAGAGCAGCTG
GTGTGCTCACCCCTCCCCAGACACCTCCATTAACCACAGACTATGTAGCGCTGGCCCTAGCCTC
TGGCAGAGCCTGTTCCTGGCCAAACTGTGGATACAGCTGGAGGGTCAGGGACTGTTACCTTCCT
TCCCCTTGGCATTAATAAATTTAAGTTAATCCTTT

hide sequence

RefSeq Acc Id:

XM_006251909 ⟹ XP_006251971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	27,379,288 - 27,424,841 (-)	NCBI
mRatBN7.2	15	24,906,090 - 24,951,409 (-)	NCBI
Rnor_6.0	15	28,613,292 - 28,659,222 (-)	NCBI
Rnor_5.0	15	32,423,198 - 32,482,762 (-)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTTCTGGTTCTGAGCCCAAAGTACAGAAAAATAAGATTCCCGTGTTCTTTCAGA
GTAAACAGTGGTCCTGAGTGAAGCAGCTGTTTTTTTTACTTTGGAAGACTTAAGCTTCGATACC
CTCACTATGGTGCTAGTCTGCTTCTCCACACCAGGAGTGGGCGGTGATAGCTAAGTCAAATGGA
CTGTTTGGAGAAAAGGAGGATGGGAGTAGGACTGGGTGTGTATTTGGGAGGGCACCGAGCCAGA
GAATTGTTAGAGGCACCTGAGCTAACTTTATGGAAGCATAAGTGTCAGGCATGCAAGCCAGCTT
CCTGGATTGTAGCACATAGTGTCTTATCTTGGAAAGGCGAAAGTCTGAGTCCCCAACTGTTCCT
CCCCCACCCCACCCCAGTAGTGCCTGGGCACCTTGTGCTGGGGAGTGGGAGGGAGTGACAGGGC
CGCCGGAAGACAGGGGTTCTAGAGGGAGGCGGAGCTGGCCTGGTGCAGAACACCTCCCTGGAGT
TCTACTCGGATATTTGAGCGGTGTGGGTGTCAAGAATCAATCATTGGGATTGCTCTCCTGCACC
TTCGTTTTCAGGCAAGCTGCAGGCTTGGTCTTGGCCCTAGAAACCGGATAGGCCTCTCTGTGCA
CTCTCAACCTAACCTGCGGGGGAAGGGAGCTGCTTCTAGTCCCGCCCTTGCGCTGTTTTGCGTT
TCTGCGCCTTTGGTTGAGTGGCAGTGGGTCTTAGCCAATGAGAGTGTGGGGCGGGCAAGCGCAT
CAAGTTAGGTTGCGTAGAAGGAGGGGAACTGGTGCTGGAGAGACAGCGAGAAGGGAACCGGCCC
CACGGCCACCGCAGGAGTTCCATCTTCTCCCTCTGAAGACTTAGCTGTCTTGCTCCATGAAGTT
CAGGACAATCTGACATGCCCTTGATTCTTGTCTCTTCATTTGAAGAATAGTCCTCATCCATTGT
GTACATTTTTTTGTTAATAGGGAAGGGGAGGGGAGAAAGAGTTCCCCCCCTCCCCTTCCCTCCC
CAGAACTTCAACAAATATCCTTTATTACTTTACCAAGATGGCAGACCCCATCATGGATCTGTTT
GATGACCCAAACTTATTTGGCCTGGATTCTTTGACTGATGACAGCTTTAATCAGGTCACTCAAG
ACCCCATTGAAGAAGCACTTGGACTGCCAAGTTCTCTGGACTCCTTGGATCAGATGAACCAAGA
TGGTGGAAGTGGTGATGTGGGGAATTCATCAGCAAGTGACCTGGTTCCCCCACCAGAGGAAACA
GCTTCCACTGAACTTCCCAAAGAATCCACAGCTCCAGCTCCAGAATCCTTAACCTTGCATGATT
ATACCACTCAGCCCACCAGCCAGGAGCAGCCAGCCCAACCTGTCTTGCAGACATCAACACCAAC
ATCAGGACTTTTGCAGGTCTCTAAGAGCCAGGAGATCCTGAGCCAAGGGAATCCTTTCATGGGT
GTCTCTGCCACAGCTGTCTCCCCCAGTAATACTGGAGGACAGCCATCTCAGTCAGCTCCTAAGA
TTGTTATTCTTAAAGCTCCACCAAACTCCTCAGTCACAGGTGCCCATGTGGCACAAATTCAGGC
CCAAGGTATCACCAGTACAGCTCAGCCCCTAGTGGCTGGCACAGCCAATGGTGGAAAAGTCACT
TTTACCAAAGTGCTTACTGGTACACCCCTCCGACCAGGTGTATCCATTGTCTCTGGTAATACAG
TGCTGGCCACGAAGGTCCCTGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACC
AGTAAAGCAGCTAGTTCTCCAGCCAGTTAAGGGTTCCGCTCCTGCTGGAAATCCCGGGGCTACC
GGGCCCCCCCTGAAGCCTGCAGTTACACTGACATCTACACCTGCCCAGGGTGAATCGAAACGCA
TCACTTTGGTCCTTCAGCAGCCACAGTCCGGAGGTCCCCAAGGACATCGGCATGTTGTGTTAGG
GAGTCTACCCGGCAAGATAGTGTTACAGGGCAACCAACTGGCAGCCTTGACTCAAGCCAAGAGT
GCTCAGGGGCAGCCTGCCAAAGTAGTCACCATCCAACTGCAGGTGCAGCAGCCACAGCAAAAGA
TCCAGATTGTACCACAGCCCCCATCATCACAGCCACAGCCACAGCCGCCACCCTCAGCCCAACC
ATTGACCCTGTCCTCTGTACAGCAGGCTCAGATAATGGGACCAGGCCAAAACCCAGGACAGAGA
CTTTCTGTACCGCTCAAGATGGTGCTGCAGCCACAGGCTGGCTCTTCTCAGGGAGCCTCTTCTG
GACTCTCTGTGGTTAAAGTTCTAAGTGCCAGTGAAGTGGCAGCCCTGTCATCACCAGCAAGCTG
TGCCCCTCACACTGCAGGGAAGACTGGAATGGAGGAGAACCGCAGGCTTGAGCACCAGAAAAAG
CAAGAAAAAGCAAATCGGATTGTGGCAGAGGCCATTGCTAGGGCCCGGGCCAGGGGTGAGCAAA
ACATACCTCGAGTCCTGAATGAGGATGAGCTGCCTAGTGTCCGGCCAGAAGAGGAGGGTGAAAA
GAAACGCAGGAAGAAGAGCAGTGGAGAAAGGCTGAAGGAAGAGAAGCCAAAGAAAAGCAAGACT
GCTGCTGCCTCCAAAACAAAGGGCAAGAGTAAGCTAAACACCATCACTCCTGTAGTGGGCAAAA
AGAGAAAGCGTAACACATCGTCTGACAACTCTGATGTGGAGGTCATGCCTGCACAGTCGCCCCG
GGAGGACGAAGAGAGCAGCATCCAGAAGAGACGTTCAAACCGCCAAGTTAAGCGAAAAAAATAT
ACAGAGGACCTGGATATAAAGATAACAGATGATGAAGAGGAGGAGGAGGTCGATGTTACTGGTC
CAATAAAACCCGAGCCCATCCTCCCAGAACCAGTGCCAGAGCCTGATGGGGAGACTCTGCCTTC
CATGCAGTTCTTTGTGGAGAATCCCAGTGAAGAAGACGCAGCTATTGTGGACAAAGTGCTTTCC
ATGCGAGTTGTGAAGAAAGAGCTTCCTTCTGGACAGTACACTGAGGCTGAGGAATTCTTTGTCA
AGTACAAGAACTACTCCTATCTGCACTGTGAATGGGCAACTATCTCCCAGCTGGAGAAGGACAA
GAGGATCCATCAGAAGCTAAAGCGCTTCAAGACGAAAATGGCTCAGATGAGGCACTTCTTTCAT
GAAGATGAAGAGCCTTTCAATCCAGACTACGTCGAGGTGGACAGGATACTGGACGAGTCTCACA
GTGTGGACAAGGATAATGGTGAGCCTGTAATCTACTACCTGGTAAAATGGTGCTCTCTGCCCTA
TGAGGACAGTACGTGGGAGCTAAAAGAGGATGTTGACGAGGGCAAGATTCGGGAATTTAAACGG
ATCCAGTCAAGGCATCCAGAACTCAAAAGGGTGAATCGTCCACAGGCAAATGCCTGGAAGAAAT
TGGAGTTGTCACATGAATATAAAAACAGAAACCAATTACGGGAGTATCAGTTAGAAGGGGTCAA
CTGGCTTCTCTTTAATTGGTATAACAGGCAGAACTGCATCCTGGCTGATGAAATGGGATTAGGC
AAAACCATTCAGTCCATTGCCTTCTTGCAGGAGGTATATAATGTGGGCATCCATGGTCCCTTTT
TGGTCATTGCTCCATTGTCCACCATTACTAACTGGGAGCGAGAATTTAATACCTGGACAGAGAT
GAACACTATTGTGTACCATGGCAGCCTGGCCAGCCGGCAGATGATTCAGCAATATGAAATGTAC
TGTAAAGATTCACGGGGTCGCCTCATCCCAGGTGCATATAAGTTTGATGCCTTGATCACCACTT
TTGAGATGATTTTGTCAGACTGTCCTGAACTTCGTGAAATTGAATGGCGTTGTGTTATCATTGA
TGAAGCCCATCGGCTAAAGAACCGTAATTGTAAGCTACTCGATAGCCTCAAGCACATGGACCTG
GAGCATAAAGTGTTACTTACAGGAACACCATTGCAAAATACTGTAGAGGAGCTGTTCAGCCTAC
TTCATTTCTTGGAACCTTCTCAGTTTCCCTCAGAATCAGAATTCCTTAAGGATTTTGGGGATCT
GAAGACAGAGGAGCAGGTTCAAAAGCTTCAGGCCATTCTAAAGCCAATGATGCTGAGAAGACTC
AAAGAGGATGTTGAAAAGAATTTGGCTCCCAAACAGGAGACTATTATTGAAGTAGAGCTGACCA
ACATCCAGAAGAAATACTACAGAGCTATTTTAGAGAAGAATTTCTCCTTCCTTTCCAAAGGAGC
AGGGCATACCAATATGCCTAACCTCCTGAACACGATGATGGAGTTACGCAAGTGCTGCAACCAC
CCATACCTCATCAATGGTGCAGAAGAGAAAATCCTGATGGAATTTCGGGAAGCTTGCCATATTA
TACCTCAAGATTTCCATCTGCAGGCCATGGTTCGGTCAGCTGGCAAATTAGTTCTTATTGACAA
GTTACTTCCAAAGCTTAAAGCTGGTGGCCATAAAGTTCTGATCTTCTCCCAGATGGTACGCTGT
CTAGATATTCTGGAGGATTATCTGATCCAGAGGAGGTACTTATACGAACGCATTGATGGGCGAG
TTAGAGGCAACCTTCGACAAGCTGCTATCGACCGCTTTAGCAAGCCTGACTCAGACCGCTTTGT
CTTCTTGCTATGTACCCGTGCTGGTGGACTTGGTATTAATCTTACAGCTGCTGATACCTGTATT
ATTTTTGATTCAGACTGGAATCCACAGAATGACCTGCAGGCCCAAGCACGTTGTCATCGCATTG
GACAGAGCAAAGCTGTAAAGGTGTACCGACTCATCACTCGCAATTCCTACGAGAGAGAGATGTT
TGATAAAGCTAGCCTCAAGTTGGGGCTGGACAAAGCTGTGCTTCAGTCCATGAGTGGTCGGGAT
GGCAACATTACTGGAATTCAACAGTTCTCCAAGAAAGAGATTGAAGATCTCTTAAGGAAAGGTG
CATATGCAGCCATAATGGAGGAAGACGATGAGGGTTCTAAGTTTTGTGAAGAGGACATAGATCA
GATCTTGCTGAGACGGACTACAACCATCACTATTGAGTCTGAAGGGAAAGGGTCTACTTTTGCC
AAGGCAAGCTTTGTTGCTTCTGAAAATAGGACAGATATTTCCCTGGATGATCCAAACTTTTGGC
AAAAATGGGCCAAAAAGGCAGACCTAGACATGGATCTGCTGAATAGTAAGAATAACTTAGTGAT
TGATACACCACGAGTTCGGAAACAGACTCGACACTTCAGCACTCTAAAAGATGACGACCTGGTT
GAGTTTTCTGATTTAGAAAGTGAAGATGATGAACGTCCCCGTTCCCGAAGACATGACCGTCATC
ACACCTATGGGCGCACTGACTGCTTTCGGGTAGAAAAACATCTCCTGGTATATGGTTGGGGACG
TTGGAGAGATATTCTGTCTCATGGACGATTTAAGCGGCGCATGACTGAAAGAGATGTGGAGACA
ATATGCCGAGCCATCCTTGTGTACTGTCTTCTACACTACCGTGGGGATGAAAACATCAAAAGCT
TCATTTGGGACTTGATTAGCCCTGCTGAAAATGGCAAGACAAAAGAATTGCAGAATCATTCAGT
CTTCCATGTCTCCCCTTTCCCAGGTCTGTCTATCCCTGTGCCCCGTGGGCGTAAGGGGAAAAAA
GTGAAGTCACAAAGTACTTTTGACATTCATAAGGCAGACTGGATCCGGAAATATAACCCTGATA
CTCTGTTCCAAGACGAGAGCTATAAGAAGCACTTGAAACATCAGTGTAACAAGGTACTGTTGAG
AGTACGGATGCTGTACTACCTGAGACAGGAGGTCATTGGAGACCAAGCAGAGAAGGTGTTAGGG
GGCGCCATAGCCAGTGAGATTGACATATGGTTCCCAGTAGTGGATCAGCTGGAGGTTCCAACAA
CATGGTGGGATAGTGAGGCTGACAAATCCCTGCTCATTGGCGTTTTTAAGCATGGCTATGAAAA
ATACAATACCATGAGGGCAGACCCTGCCTTGTGTTTCCTGGAAAAAGCTGGCAGGCCAGATGAC
AAAGCCATTGCAGCGGAGCACAGAGTTCTGGATAACTTCTCCGACCTGGTAGAAGGGATTGACT
TTGATAAGGATTGTGAAGATCCTGAATATAAACCCCTTCAGGGTCCCCCAAAGGACCCGGATGA
TGAGGGTGATCCCTTGATGATGATGGATGAGGAGATCTCAGTCATTGACGGAGATGAAGCCCCG
GTGACTCAACAGCCAGGGCATTTATTCTGGCCTCCAGGCTCTGCCCTCACAGCTAGGCTCCGCC
GCCTGGTAACCGCCTATCAACGCAGCTACAAGAGAGAACAAATGAAGATAGAGGCTGCGGAGCG
TGGGGACCGGAGACGCCGACGTTGTGAAGCGGCCTTTAAGCTCAAAGAAATTGCAAGGCGGGAA
AAACAACAACGATGGACACGGCGCGAGCAAACTGATTTCTATCGAGTAGTGTCTACCTTTGGGG
TAGAGTACGACCCTGACAACATGCAGTTTCACTGGGATCGCTTCCGTACTTTTGCTCGCCTGGA
CAAAAAAACAGATGAAAGCCTTACCAAGTACTTCCATGGTTTTGTGGCCATGTGTAGACAAGTG
TGCCGCCTTCCCCCAGCTGCTGGTGATGAACCTCCAGATCCTAATCTGTTTATTGAGCCCATCA
CTGAAGAGAGAGCATCACGGACTCTCTACCGAATCGAGTTGCTTCGACGCTTACGGGAACAAGT
TTTATGCCACCCCCTTTTAGAAGATCGGCTGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCC
AAATGGTGGGAACCTGTCCGTCACGATGGGGAGCTCCTCCGAGGAGCAGCCCGCCATGGGGTGA
GCCAAACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTA
TATGCAGAACCATCAGGCAGGAGCATCAGCTGCATCCCTGTCACGATGCTCCACTCCACTGCTG
CACCAGCAGTGTACCTCACGCACTGCTTCACCATCACCCCTGCGCCCAGATGTTCCTGCTGAAA
AGTCACCTGAGGAGAATGCTGTTCAGGTCCCCAGTCTGGACAGTCTGACTTTAAAACTAGAGGA
TGAGGTGGTGGCTAGGAGCCGACTCACCCCACAAGACTATGAAATTCGTGTAGCCTCTTCAGAT
ACAGCCCCTCTGTCCCGGAGTGTTCCGCCAGTCAAACTGGAGGATGACGATGATTCAGACTCTG
AGCTGGACTTGAGCAAGTTGTCACCATCGTCCTCTTCATCTTCATCCTCCTCCAGCTCCAGCTC
CAGCAGTGATGAGAGTGAAGATGAGAAGGAAGAGAAGTTAACTGCTGACCGGTCCCGCCCAAAG
CTCTATGATGAAGAGAGCCTTCTGTCCCTTACTATGTCCCAAGATGGATTCCCAAATGAAGATG
GAGAACAAATGACCCCTGAGTTGCTGCTGCTGCAGGAAAGACAAAGAGCCTCTGAATGGCCCAA
GGATCGTGTTCTGATAAACCGCATTGACCTCGTCTGCCAGGCTGTACTCTCAGGGAAATGGCCT
TCTAACCGCCGGAGCCAGGAAATGACAACAGGAGGAATTTTGGGGCCAGGAAACCATTTATTAG
ACAGTCCCTCTTTGACCCCAGGAGAATATGGGGACTCTCCGGTCCCCACACCACGAAGCAGCAG
TGCAGCTTCCATGGTAGAGGAAGAAGCATCTGCGGTCACCACAGCAGCAGCCCAATTTACTAAA
CTTCGGCGAGGCATGGACGAGAAAGAGTTTACAGTTCAGATCAAAGATGAAGAAGGATTGAAGT
TAACATTCCAGAAGCATAGATTGATGGCTAATGGTGTAATGGGAGATGGACATCCACTGTTTCA
TAAGAAGAAGGGGAACAGGAAAAAGCTAGTAGAGCTGGAGGTGGAGTGCATGGAAGAGCCTAAT
CACCTTGATGTGGACCTGGAGACCCGGATCCCTGTCATCAATAAGGTGGATGGTACTTTGCTGG
TGGGTGATGAGGCCCCTCGCCGGGCGGAGCTGGACATGTGGTTACAGGGTCATCCAGAGTTTGC
TGTTGATCCCCGATTTCTAGCGTATATGGAGGAACGTAGAAAACAGAAGTGGCAGAGATGTAAA
AAAAATAATAAGACAGAATTGAACTGTTTGGGAATGGAACCAGTCCAGCCAGCCAACTCTAGAA
ATGGGAAAAAGGGTCACTATGCTGAAACTGCGTTCAACCGGGTTTTGCCAGGGCCTATTGCACC
AGAAAACAGCAAGAAACGGGTCCGCAGGACAAGACCAGACCTTTCTAAGATGATGGCCCTGATG
CAGGGTGGAAGCACTGGGTCCCTATCTCTGCATAACACCTTTCAACACAGCAGTAGTAACCTAC
AGTCTGTGTCGTCTCTGGGTCACAGCAGTGCCACTTCTGCATCTCTGCCTTTCATGCCGTTTGT
GATGGGTGGTGCAGCAGCACCCCCTCATGTAGACTCCAGCACCATGCTTCATCATCACCACCAC
CACCCCCACCCCCACCATCACCACCATCACCATCCAGGCTTGAGAACCACTGGCTACCCTTCTT
CACCAGCTACTACCACCTCTGGTACTGCCTTGCGGTTACCAACACTGCAGCATGAGGACGATGA
TGAAGAGGAGGATGAAGATGATGATGATTTATCTCAGGGCTATGATAGCTCAGAAAGGGACTTC
TCACTCATTGATGACCCTATGATGCCAGCCAACTCAGACTCCAGTGATGATGCTGACGACTGAA
GCCCTAATATAGACCCGTGCTGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGA
AATGTGGGAGGG

hide sequence

RefSeq Acc Id:

XM_006251910 ⟹ XP_006251972

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	27,379,288 - 27,425,578 (-)	NCBI
mRatBN7.2	15	24,906,090 - 24,951,174 (-)	NCBI
Rnor_6.0	15	28,613,292 - 28,658,369 (-)	NCBI
Rnor_5.0	15	32,423,198 - 32,482,762 (-)	NCBI

Sequence:

show sequence

CACCTTTGCCTCCCACCGGGGTGAGGTGCAGGGCTTTTTCACCTTCAGGGCTTGCTCGGCCTCT
CAGACTGCAGCTTGCGCCCTAACCTTGCTGCTTCCCTGGGCATCACACCCCCACCCCCACCCCT
CGTATCTTCTCGTCTTGACCATCCCCACCTCGGAGGATGCCCCCGATAGCTCCCTCGCTCAAGT
GCATGTACTTCAACTCCATTTGGTGGCTCCAGTTGCCCGAAGTCTTCCGCCGGAGCCTCTGCCT
GCCTCTGCCGTATGGGCCTTAATGGCACTAACCCCGGCAGTGAGAGCAGGAGTTCCATCTTCTC
CCTCTGAAGACTTAGCTGTCTTGCTCCATGAAGTTCAGGACAATCTGACATGCCCTTGATTCTT
GTCTCTTCATTTGAAGAATAGTCCTCATCCATTGTGTACATTTTTTTGTTAATAGGGAAGGGGA
GGGGAGAAAGAGTTCCCCCCCTCCCCTTCCCTCCCCAGAACTTCAACAAATATCCTTTATTACT
TTACCAAGATGGCAGACCCCATCATGGATCTGTTTGATGACCCAAACTTATTTGGCCTGGATTC
TTTGACTGATGACAGCTTTAATCAGGTCACTCAAGACCCCATTGAAGAAGCACTTGGACTGCCA
AGTTCTCTGGACTCCTTGGATCAGATGAACCAAGATGGTGGAAGTGGTGATGTGGGGAATTCAT
CAGCAAGTGACCTGGTTCCCCCACCAGAGGAAACAGCTTCCACTGAACTTCCCAAAGAATCCAC
AGCTCCAGCTCCAGAATCCTTAACCTTGCATGATTATACCACTCAGCCCACCAGCCAGGAGCAG
CCAGCCCAACCTGTCTTGCAGACATCAACACCAACATCAGGACTTTTGCAGGTCTCTAAGAGCC
AGGAGATCCTGAGCCAAGGGAATCCTTTCATGGGTGTCTCTGCCACAGCTGTCTCCCCCAGTAA
TACTGGAGGACAGCCATCTCAGTCAGCTCCTAAGATTGTTATTCTTAAAGCTCCACCAAACTCC
TCAGTCACAGGTGCCCATGTGGCACAAATTCAGGCCCAAGGTATCACCAGTACAGCTCAGCCCC
TAGTGGCTGGCACAGCCAATGGTGGAAAAGTCACTTTTACCAAAGTGCTTACTGGTACACCCCT
CCGACCAGGTGTATCCATTGTCTCTGGTAATACAGTGCTGGCCACGAAGGTCCCTGGGAACCAG
GCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAGCAGCTAGTTCTCCAGCCAGTTA
AGGGTTCCGCTCCTGCTGGAAATCCCGGGGCTACCGGGCCCCCCCTGAAGCCTGCAGTTACACT
GACATCTACACCTGCCCAGGGTGAATCGAAACGCATCACTTTGGTCCTTCAGCAGCCACAGTCC
GGAGGTCCCCAAGGACATCGGCATGTTGTGTTAGGGAGTCTACCCGGCAAGATAGTGTTACAGG
GCAACCAACTGGCAGCCTTGACTCAAGCCAAGAGTGCTCAGGGGCAGCCTGCCAAAGTAGTCAC
CATCCAACTGCAGGTGCAGCAGCCACAGCAAAAGATCCAGATTGTACCACAGCCCCCATCATCA
CAGCCACAGCCACAGCCGCCACCCTCAGCCCAACCATTGACCCTGTCCTCTGTACAGCAGGCTC
AGATAATGGGACCAGGCCAAAACCCAGGACAGAGACTTTCTGTACCGCTCAAGATGGTGCTGCA
GCCACAGGCTGGCTCTTCTCAGGGAGCCTCTTCTGGACTCTCTGTGGTTAAAGTTCTAAGTGCC
AGTGAAGTGGCAGCCCTGTCATCACCAGCAAGCTGTGCCCCTCACACTGCAGGGAAGACTGGAA
TGGAGGAGAACCGCAGGCTTGAGCACCAGAAAAAGCAAGAAAAAGCAAATCGGATTGTGGCAGA
GGCCATTGCTAGGGCCCGGGCCAGGGGTGAGCAAAACATACCTCGAGTCCTGAATGAGGATGAG
CTGCCTAGTGTCCGGCCAGAAGAGGAGGGTGAAAAGAAACGCAGGAAGAAGAGCAGTGGAGAAA
GGCTGAAGGAAGAGAAGCCAAAGAAAAGCAAGACTGCTGCTGCCTCCAAAACAAAGGGCAAGAG
TAAGCTAAACACCATCACTCCTGTAGTGGGCAAAAAGAGAAAGCGTAACACATCGTCTGACAAC
TCTGATGTGGAGGTCATGCCTGCACAGTCGCCCCGGGAGGACGAAGAGAGCAGCATCCAGAAGA
GACGTTCAAACCGCCAAGTTAAGCGAAAAAAATATACAGAGGACCTGGATATAAAGATAACAGA
TGATGAAGAGGAGGAGGAGGTCGATGTTACTGGTCCAATAAAACCCGAGCCCATCCTCCCAGAA
CCAGTGCCAGAGCCTGATGGGGAGACTCTGCCTTCCATGCAGTTCTTTGTGGAGAATCCCAGTG
AAGAAGACGCAGCTATTGTGGACAAAGTGCTTTCCATGCGAGTTGTGAAGAAAGAGCTTCCTTC
TGGACAGTACACTGAGGCTGAGGAATTCTTTGTCAAGTACAAGAACTACTCCTATCTGCACTGT
GAATGGGCAACTATCTCCCAGCTGGAGAAGGACAAGAGGATCCATCAGAAGCTAAAGCGCTTCA
AGACGAAAATGGCTCAGATGAGGCACTTCTTTCATGAAGATGAAGAGCCTTTCAATCCAGACTA
CGTCGAGGTGGACAGGATACTGGACGAGTCTCACAGTGTGGACAAGGATAATGGTGAGCCTGTA
ATCTACTACCTGGTAAAATGGTGCTCTCTGCCCTATGAGGACAGTACGTGGGAGCTAAAAGAGG
ATGTTGACGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCATCCAGAACTCAAAAG
GGTGAATCGTCCACAGGCAAATGCCTGGAAGAAATTGGAGTTGTCACATGAATATAAAAACAGA
AACCAATTACGGGAGTATCAGTTAGAAGGGGTCAACTGGCTTCTCTTTAATTGGTATAACAGGC
AGAACTGCATCCTGGCTGATGAAATGGGATTAGGCAAAACCATTCAGTCCATTGCCTTCTTGCA
GGAGGTATATAATGTGGGCATCCATGGTCCCTTTTTGGTCATTGCTCCATTGTCCACCATTACT
AACTGGGAGCGAGAATTTAATACCTGGACAGAGATGAACACTATTGTGTACCATGGCAGCCTGG
CCAGCCGGCAGATGATTCAGCAATATGAAATGTACTGTAAAGATTCACGGGGTCGCCTCATCCC
AGGTGCATATAAGTTTGATGCCTTGATCACCACTTTTGAGATGATTTTGTCAGACTGTCCTGAA
CTTCGTGAAATTGAATGGCGTTGTGTTATCATTGATGAAGCCCATCGGCTAAAGAACCGTAATT
GTAAGCTACTCGATAGCCTCAAGCACATGGACCTGGAGCATAAAGTGTTACTTACAGGAACACC
ATTGCAAAATACTGTAGAGGAGCTGTTCAGCCTACTTCATTTCTTGGAACCTTCTCAGTTTCCC
TCAGAATCAGAATTCCTTAAGGATTTTGGGGATCTGAAGACAGAGGAGCAGGTTCAAAAGCTTC
AGGCCATTCTAAAGCCAATGATGCTGAGAAGACTCAAAGAGGATGTTGAAAAGAATTTGGCTCC
CAAACAGGAGACTATTATTGAAGTAGAGCTGACCAACATCCAGAAGAAATACTACAGAGCTATT
TTAGAGAAGAATTTCTCCTTCCTTTCCAAAGGAGCAGGGCATACCAATATGCCTAACCTCCTGA
ACACGATGATGGAGTTACGCAAGTGCTGCAACCACCCATACCTCATCAATGGTGCAGAAGAGAA
AATCCTGATGGAATTTCGGGAAGCTTGCCATATTATACCTCAAGATTTCCATCTGCAGGCCATG
GTTCGGTCAGCTGGCAAATTAGTTCTTATTGACAAGTTACTTCCAAAGCTTAAAGCTGGTGGCC
ATAAAGTTCTGATCTTCTCCCAGATGGTACGCTGTCTAGATATTCTGGAGGATTATCTGATCCA
GAGGAGGTACTTATACGAACGCATTGATGGGCGAGTTAGAGGCAACCTTCGACAAGCTGCTATC
GACCGCTTTAGCAAGCCTGACTCAGACCGCTTTGTCTTCTTGCTATGTACCCGTGCTGGTGGAC
TTGGTATTAATCTTACAGCTGCTGATACCTGTATTATTTTTGATTCAGACTGGAATCCACAGAA
TGACCTGCAGGCCCAAGCACGTTGTCATCGCATTGGACAGAGCAAAGCTGTAAAGGTGTACCGA
CTCATCACTCGCAATTCCTACGAGAGAGAGATGTTTGATAAAGCTAGCCTCAAGTTGGGGCTGG
ACAAAGCTGTGCTTCAGTCCATGAGTGGTCGGGATGGCAACATTACTGGAATTCAACAGTTCTC
CAAGAAAGAGATTGAAGATCTCTTAAGGAAAGGTGCATATGCAGCCATAATGGAGGAAGACGAT
GAGGGTTCTAAGTTTTGTGAAGAGGACATAGATCAGATCTTGCTGAGACGGACTACAACCATCA
CTATTGAGTCTGAAGGGAAAGGGTCTACTTTTGCCAAGGCAAGCTTTGTTGCTTCTGAAAATAG
GACAGATATTTCCCTGGATGATCCAAACTTTTGGCAAAAATGGGCCAAAAAGGCAGACCTAGAC
ATGGATCTGCTGAATAGTAAGAATAACTTAGTGATTGATACACCACGAGTTCGGAAACAGACTC
GACACTTCAGCACTCTAAAAGATGACGACCTGGTTGAGTTTTCTGATTTAGAAAGTGAAGATGA
TGAACGTCCCCGTTCCCGAAGACATGACCGTCATCACACCTATGGGCGCACTGACTGCTTTCGG
GTAGAAAAACATCTCCTGGTATATGGTTGGGGACGTTGGAGAGATATTCTGTCTCATGGACGAT
TTAAGCGGCGCATGACTGAAAGAGATGTGGAGACAATATGCCGAGCCATCCTTGTGTACTGTCT
TCTACACTACCGTGGGGATGAAAACATCAAAAGCTTCATTTGGGACTTGATTAGCCCTGCTGAA
AATGGCAAGACAAAAGAATTGCAGAATCATTCAGTCTTCCATGTCTCCCCTTTCCCAGGTCTGT
CTATCCCTGTGCCCCGTGGGCGTAAGGGGAAAAAAGTGAAGTCACAAAGTACTTTTGACATTCA
TAAGGCAGACTGGATCCGGAAATATAACCCTGATACTCTGTTCCAAGACGAGAGCTATAAGAAG
CACTTGAAACATCAGTGTAACAAGGTACTGTTGAGAGTACGGATGCTGTACTACCTGAGACAGG
AGGTCATTGGAGACCAAGCAGAGAAGGTGTTAGGGGGCGCCATAGCCAGTGAGATTGACATATG
GTTCCCAGTAGTGGATCAGCTGGAGGTTCCAACAACATGGTGGGATAGTGAGGCTGACAAATCC
CTGCTCATTGGCGTTTTTAAGCATGGCTATGAAAAATACAATACCATGAGGGCAGACCCTGCCT
TGTGTTTCCTGGAAAAAGCTGGCAGGCCAGATGACAAAGCCATTGCAGCGGAGCACAGAGTTCT
GGATAACTTCTCCGACCTGGTAGAAGGGATTGACTTTGATAAGGATTGTGAAGATCCTGAATAT
AAACCCCTTCAGGGTCCCCCAAAGGACCCGGATGATGAGGGTGATCCCTTGATGATGATGGATG
AGGAGATCTCAGTCATTGACGGAGATGAAGCCCCGGTGACTCAACAGCCAGGGCATTTATTCTG
GCCTCCAGGCTCTGCCCTCACAGCTAGGCTCCGCCGCCTGGTAACCGCCTATCAACGCAGCTAC
AAGAGAGAACAAATGAAGATAGAGGCTGCGGAGCGTGGGGACCGGAGACGCCGACGTTGTGAAG
CGGCCTTTAAGCTCAAAGAAATTGCAAGGCGGGAAAAACAACAACGATGGACACGGCGCGAGCA
AACTGATTTCTATCGAGTAGTGTCTACCTTTGGGGTAGAGTACGACCCTGACAACATGCAGTTT
CACTGGGATCGCTTCCGTACTTTTGCTCGCCTGGACAAAAAAACAGATGAAAGCCTTACCAAGT
ACTTCCATGGTTTTGTGGCCATGTGTAGACAAGTGTGCCGCCTTCCCCCAGCTGCTGGTGATGA
ACCTCCAGATCCTAATCTGTTTATTGAGCCCATCACTGAAGAGAGAGCATCACGGACTCTCTAC
CGAATCGAGTTGCTTCGACGCTTACGGGAACAAGTTTTATGCCACCCCCTTTTAGAAGATCGGC
TGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCCAAATGGTGGGAACCTGTCCGTCACGATGG
GGAGCTCCTCCGAGGAGCAGCCCGCCATGGGGTGAGCCAAACAGACTGCAACATCATGCAGGAC
CCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTATATGCAGAACCATCAGGCAGGAGCATCAG
CTGCATCCCTGTCACGATGCTCCACTCCACTGCTGCACCAGCAGTGTACCTCACGCACTGCTTC
ACCATCACCCCTGCGCCCAGATGTTCCTGCTGAAAAGTCACCTGAGGAGAATGCTGTTCAGGTC
CCCAGTCTGGACAGTCTGACTTTAAAACTAGAGGATGAGGTGGTGGCTAGGAGCCGACTCACCC
CACAAGACTATGAAATTCGTGTAGCCTCTTCAGATACAGCCCCTCTGTCCCGGAGTGTTCCGCC
AGTCAAACTGGAGGATGACGATGATTCAGACTCTGAGCTGGACTTGAGCAAGTTGTCACCATCG
TCCTCTTCATCTTCATCCTCCTCCAGCTCCAGCTCCAGCAGTGATGAGAGTGAAGATGAGAAGG
AAGAGAAGTTAACTGCTGACCGGTCCCGCCCAAAGCTCTATGATGAAGAGAGCCTTCTGTCCCT
TACTATGTCCCAAGATGGATTCCCAAATGAAGATGGAGAACAAATGACCCCTGAGTTGCTGCTG
CTGCAGGAAAGACAAAGAGCCTCTGAATGGCCCAAGGATCGTGTTCTGATAAACCGCATTGACC
TCGTCTGCCAGGCTGTACTCTCAGGGAAATGGCCTTCTAACCGCCGGAGCCAGGAAATGACAAC
AGGAGGAATTTTGGGGCCAGGAAACCATTTATTAGACAGTCCCTCTTTGACCCCAGGAGAATAT
GGGGACTCTCCGGTCCCCACACCACGAAGCAGCAGTGCAGCTTCCATGGTAGAGGAAGAAGCAT
CTGCGGTCACCACAGCAGCAGCCCAATTTACTAAACTTCGGCGAGGCATGGACGAGAAAGAGTT
TACAGTTCAGATCAAAGATGAAGAAGGATTGAAGTTAACATTCCAGAAGCATAGATTGATGGCT
AATGGTGTAATGGGAGATGGACATCCACTGTTTCATAAGAAGAAGGGGAACAGGAAAAAGCTAG
TAGAGCTGGAGGTGGAGTGCATGGAAGAGCCTAATCACCTTGATGTGGACCTGGAGACCCGGAT
CCCTGTCATCAATAAGGTGGATGGTACTTTGCTGGTGGGTGATGAGGCCCCTCGCCGGGCGGAG
CTGGACATGTGGTTACAGGGTCATCCAGAGTTTGCTGTTGATCCCCGATTTCTAGCGTATATGG
AGGAACGTAGAAAACAGAAGTGGCAGAGATGTAAAAAAAATAATAAGACAGAATTGAACTGTTT
GGGAATGGAACCAGTCCAGCCAGCCAACTCTAGAAATGGGAAAAAGGGTCACTATGCTGAAACT
GCGTTCAACCGGGTTTTGCCAGGGCCTATTGCACCAGAAAACAGCAAGAAACGGGTCCGCAGGA
CAAGACCAGACCTTTCTAAGATGATGGCCCTGATGCAGGGTGGAAGCACTGGGTCCCTATCTCT
GCATAACACCTTTCAACACAGCAGTAGTAACCTACAGTCTGTGTCGTCTCTGGGTCACAGCAGT
GCCACTTCTGCATCTCTGCCTTTCATGCCGTTTGTGATGGGTGGTGCAGCAGCACCCCCTCATG
TAGACTCCAGCACCATGCTTCATCATCACCACCACCACCCCCACCCCCACCATCACCACCATCA
CCATCCAGGCTTGAGAACCACTGGCTACCCTTCTTCACCAGCTACTACCACCTCTGGTACTGCC
TTGCGGTTACCAACACTGCAGCATGAGGACGATGATGAAGAGGAGGATGAAGATGATGATGATT
TATCTCAGGGCTATGATAGCTCAGAAAGGGACTTCTCACTCATTGATGACCCTATGATGCCAGC
CAACTCAGACTCCAGTGATGATGCTGACGACTGAAGCCCTAATATAGACCCGTGCTGGGTGGCT
GCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATGTGGGAGGG

hide sequence

RefSeq Acc Id:

XM_006251912 ⟹ XP_006251974

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	27,379,288 - 27,438,958 (-)	NCBI
mRatBN7.2	15	24,905,791 - 24,965,461 (-)	NCBI
Rnor_6.0	15	28,612,932 - 28,672,574 (-)	NCBI
Rnor_5.0	15	32,423,198 - 32,482,762 (-)	NCBI

Sequence:

show sequence

GAGCATGGAGGACTAGCAAGCTTGCTTGCGGCGAGGGTTGGCCGTGCTCCGCCGGAAGGCGCCT
TGTTCTCCCGGACGGTGGGTTGCAACTCTTGCCCGGGGAAGGAAGCTGCAGGACTGGCTCAGGA
GTTCCATCTTCTCCCTCTGAAGACTTAGCTGTCTTGCTCCATGAAGTTCAGGACAATCTGACAT
GCCCTTGATTCTTGTCTCTTCATTTGAAGAATAGTCCTCATCCATTGTGTACATTTTTTTGTTA
ATAGGGAAGGGGAGGGGAGAAAGAGTTCCCCCCCTCCCCTTCCCTCCCCAGAACTTCAACAAAT
ATCCTTTATTACTTTACCAAGATGGCAGACCCCATCATGGATCTGTTTGATGACCCAAACTTAT
TTGGCCTGGATTCTTTGACTGATGACAGCTTTAATCAGGTCACTCAAGACCCCATTGAAGAAGC
ACTTGGACTGCCAAGTTCTCTGGACTCCTTGGATCAGATGAACCAAGATGGTGGAAGTGGTGAT
GTGGGGAATTCATCAGCAAGTGACCTGGTTCCCCCACCAGAGGAAACAGCTTCCACTGAACTTC
CCAAAGAATCCACAGCTCCAGCTCCAGAATCCTTAACCTTGCATGATTATACCACTCAGCCCAC
CAGCCAGGAGCAGCCAGCCCAACCTGTCTTGCAGACATCAACACCAACATCAGGACTTTTGCAG
GTCTCTAAGAGCCAGGAGATCCTGAGCCAAGGGAATCCTTTCATGGGTGTCTCTGCCACAGCTG
TCTCCCCCAGTAATACTGGAGGACAGCCATCTCAGTCAGCTCCTAAGATTGTTATTCTTAAAGC
TCCACCAAACTCCTCAGTCACAGGTGCCCATGTGGCACAAATTCAGGCCCAAGGTATCACCAGT
ACAGCTCAGCCCCTAGTGGCTGGCACAGCCAATGGTGGAAAAGTCACTTTTACCAAAGTGCTTA
CTGGTACACCCCTCCGACCAGGTGTATCCATTGTCTCTGGTAATACAGTGCTGGCCACGAAGGT
CCCTGGGAACCAGGCTGCTGTTCAGCGCATTGTCCAGCCAAGCCGACCAGTAAAGCAGCTAGTT
CTCCAGCCAGTTAAGGGTTCCGCTCCTGCTGGAAATCCCGGGGCTACCGGGCCCCCCCTGAAGC
CTGCAGTTACACTGACATCTACACCTGCCCAGGGTGAATCGAAACGCATCACTTTGGTCCTTCA
GCAGCCACAGTCCGGAGGTCCCCAAGGACATCGGCATGTTGTGTTAGGGAGTCTACCCGGCAAG
ATAGTGTTACAGGGCAACCAACTGGCAGCCTTGACTCAAGCCAAGAGTGCTCAGGGGCAGCCTG
CCAAAGTAGTCACCATCCAACTGCAGGTGCAGCAGCCACAGCAAAAGATCCAGATTGTACCACA
GCCCCCATCATCACAGCCACAGCCACAGCCGCCACCCTCAGCCCAACCATTGACCCTGTCCTCT
GTACAGCAGGCTCAGATAATGGGACCAGGCCAAAACCCAGGACAGAGACTTTCTGTACCGCTCA
AGATGGTGCTGCAGCCACAGGCTGGCTCTTCTCAGGGAGCCTCTTCTGGACTCTCTGTGGTTAA
AGTTCTAAGTGCCAGTGAAGTGGCAGCCCTGTCATCACCAGCAAGCTGTGCCCCTCACACTGCA
GGGAAGACTGGAATGGAGGAGAACCGCAGGCTTGAGCACCAGAAAAAGCAAGAAAAAGCAAATC
GGATTGTGGCAGAGGCCATTGCTAGGGCCCGGGCCAGGGGTGAGCAAAACATACCTCGAGTCCT
GAATGAGGATGAGCTGCCTAGTGTCCGGCCAGAAGAGGAGGGTGAAAAGAAACGCAGGAAGAAG
AGCAGTGGAGAAAGGCTGAAGGAAGAGAAGCCAAAGAAAAGCAAGACTGCTGCTGCCTCCAAAA
CAAAGGGCAAGAGTAAGCTAAACACCATCACTCCTGTAGTGGGCAAAAAGAGAAAGCGTAACAC
ATCGTCTGACAACTCTGATGTGGAGGTCATGCCTGCACAGTCGCCCCGGGAGGACGAAGAGAGC
AGCATCCAGAAGAGACGTTCAAACCGCCAAGTTAAGCGAAAAAAATATACAGAGGACCTGGATA
TAAAGATAACAGATGATGAAGAGGAGGAGGAGGTCGATGTTACTGGTCCAATAAAACCCGAGCC
CATCCTCCCAGAACCAGTGCCAGAGCCTGATGGGGAGACTCTGCCTTCCATGCAGTTCTTTGTG
GAGAATCCCAGTGAAGAAGACGCAGCTATTGTGGACAAAGTGCTTTCCATGCGAGTTGTGAAGA
AAGAGCTTCCTTCTGGACAGTACACTGAGGCTGAGGAATTCTTTGTCAAGTACAAGAACTACTC
CTATCTGCACTGTGAATGGGCAACTATCTCCCAGCTGGAGAAGGACAAGAGGATCCATCAGAAG
CTAAAGCGCTTCAAGACGAAAATGGCTCAGATGAGGCACTTCTTTCATGAAGATGAAGAGCCTT
TCAATCCAGACTACGTCGAGGTGGACAGGATACTGGACGAGTCTCACAGTGTGGACAAGGATAA
TGGTGAGCCTGTAATCTACTACCTGGTAAAATGGTGCTCTCTGCCCTATGAGGACAGTACGTGG
GAGCTAAAAGAGGATGTTGACGAGGGCAAGATTCGGGAATTTAAACGGATCCAGTCAAGGCATC
CAGAACTCAAAAGGGTGAATCGTCCACAGGCAAATGCCTGGAAGAAATTGGAGTTGTCACATGA
ATATAAAAACAGAAACCAATTACGGGAGTATCAGTTAGAAGGGGTCAACTGGCTTCTCTTTAAT
TGGTATAACAGGCAGAACTGCATCCTGGCTGATGAAATGGGATTAGGCAAAACCATTCAGTCCA
TTGCCTTCTTGCAGGAGGTATATAATGTGGGCATCCATGGTCCCTTTTTGGTCATTGCTCCATT
GTCCACCATTACTAACTGGGAGCGAGAATTTAATACCTGGACAGAGATGAACACTATTGTGTAC
CATGGCAGCCTGGCCAGCCGGCAGATGATTCAGCAATATGAAATGTACTGTAAAGATTCACGGG
GTCGCCTCATCCCAGGTGCATATAAGTTTGATGCCTTGATCACCACTTTTGAGATGATTTTGTC
AGACTGTCCTGAACTTCGTGAAATTGAATGGCGTTGTGTTATCATTGATGAAGCCCATCGGCTA
AAGAACCGTAATTGTAAGCTACTCGATAGCCTCAAGCACATGGACCTGGAGCATAAAGTGTTAC
TTACAGGAACACCATTGCAAAATACTGTAGAGGAGCTGTTCAGCCTACTTCATTTCTTGGAACC
TTCTCAGTTTCCCTCAGAATCAGAATTCCTTAAGGATTTTGGGGATCTGAAGACAGAGGAGCAG
GTTCAAAAGCTTCAGGCCATTCTAAAGCCAATGATGCTGAGAAGACTCAAAGAGGATGTTGAAA
AGAATTTGGCTCCCAAACAGGAGACTATTATTGAAGTAGAGCTGACCAACATCCAGAAGAAATA
CTACAGAGCTATTTTAGAGAAGAATTTCTCCTTCCTTTCCAAAGGAGCAGGGCATACCAATATG
CCTAACCTCCTGAACACGATGATGGAGTTACGCAAGTGCTGCAACCACCCATACCTCATCAATG
GTGCAGAAGAGAAAATCCTGATGGAATTTCGGGAAGCTTGCCATATTATACCTCAAGATTTCCA
TCTGCAGGCCATGGTTCGGTCAGCTGGCAAATTAGTTCTTATTGACAAGTTACTTCCAAAGCTT
AAAGCTGGTGGCCATAAAGTTCTGATCTTCTCCCAGATGGTACGCTGTCTAGATATTCTGGAGG
ATTATCTGATCCAGAGGAGGTACTTATACGAACGCATTGATGGGCGAGTTAGAGGCAACCTTCG
ACAAGCTGCTATCGACCGCTTTAGCAAGCCTGACTCAGACCGCTTTGTCTTCTTGCTATGTACC
CGTGCTGGTGGACTTGGTATTAATCTTACAGCTGCTGATACCTGTATTATTTTTGATTCAGACT
GGAATCCACAGAATGACCTGCAGGCCCAAGCACGTTGTCATCGCATTGGACAGAGCAAAGCTGT
AAAGGTGTACCGACTCATCACTCGCAATTCCTACGAGAGAGAGATGTTTGATAAAGCTAGCCTC
AAGTTGGGGCTGGACAAAGCTGTGCTTCAGTCCATGAGTGGTCGGGATGGCAACATTACTGGAA
TTCAACAGTTCTCCAAGAAAGAGATTGAAGATCTCTTAAGGAAAGGTGCATATGCAGCCATAAT
GGAGGAAGACGATGAGGGTTCTAAGTTTTGTGAAGAGGACATAGATCAGATCTTGCTGAGACGG
ACTACAACCATCACTATTGAGTCTGAAGGGAAAGGGTCTACTTTTGCCAAGGCAAGCTTTGTTG
CTTCTGAAAATAGGACAGATATTTCCCTGGATGATCCAAACTTTTGGCAAAAATGGGCCAAAAA
GGCAGACCTAGACATGGATCTGCTGAATAGTAAGAATAACTTAGTGATTGATACACCACGAGTT
CGGAAACAGACTCGACACTTCAGCACTCTAAAAGATGACGACCTGGTTGAGTTTTCTGATTTAG
AAAGTGAAGATGATGAACGTCCCCGTTCCCGAAGACATGACCGTCATCACACCTATGGGCGCAC
TGACTGCTTTCGGGTAGAAAAACATCTCCTGGTATATGGTTGGGGACGTTGGAGAGATATTCTG
TCTCATGGACGATTTAAGCGGCGCATGACTGAAAGAGATGTGGAGACAATATGCCGAGCCATCC
TTGTGTACTGTCTTCTACACTACCGTGGGGATGAAAACATCAAAAGCTTCATTTGGGACTTGAT
TAGCCCTGCTGAAAATGGCAAGACAAAAGAATTGCAGAATCATTCAGTCTTCCATGTCTCCCCT
TTCCCAGGTCTGTCTATCCCTGTGCCCCGTGGGCGTAAGGGGAAAAAAGTGAAGTCACAAAGTA
CTTTTGACATTCATAAGGCAGACTGGATCCGGAAATATAACCCTGATACTCTGTTCCAAGACGA
GAGCTATAAGAAGCACTTGAAACATCAGTGTAACAAGGTACTGTTGAGAGTACGGATGCTGTAC
TACCTGAGACAGGAGGTCATTGGAGACCAAGCAGAGAAGGTGTTAGGGGGCGCCATAGCCAGTG
AGATTGACATATGGTTCCCAGTAGTGGATCAGCTGGAGGTTCCAACAACATGGTGGGATAGTGA
GGCTGACAAATCCCTGCTCATTGGCGTTTTTAAGCATGGCTATGAAAAATACAATACCATGAGG
GCAGACCCTGCCTTGTGTTTCCTGGAAAAAGCTGGCAGGCCAGATGACAAAGCCATTGCAGCGG
AGCACAGAGTTCTGGATAACTTCTCCGACCTGGTAGAAGGGATTGACTTTGATAAGGATTGTGA
AGATCCTGAATATAAACCCCTTCAGGGTCCCCCAAAGGACCCGGATGATGAGGGTGATCCCTTG
ATGATGATGGATGAGGAGATCTCAGTCATTGACGGAGATGAAGCCCCGGTGACTCAACAGCCAG
GGCATTTATTCTGGCCTCCAGGCTCTGCCCTCACAGCTAGGCTCCGCCGCCTGGTAACCGCCTA
TCAACGCAGCTACAAGAGAGAACAAATGAAGATAGAGGCTGCGGAGCGTGGGGACCGGAGACGC
CGACGTTGTGAAGCGGCCTTTAAGCTCAAAGAAATTGCAAGGCGGGAAAAACAACAACGATGGA
CACGGCGCGAGCAAACTGATTTCTATCGAGTAGTGTCTACCTTTGGGGTAGAGTACGACCCTGA
CAACATGCAGTTTCACTGGGATCGCTTCCGTACTTTTGCTCGCCTGGACAAAAAAACAGATGAA
AGCCTTACCAAGTACTTCCATGGTTTTGTGGCCATGTGTAGACAAGTGTGCCGCCTTCCCCCAG
CTGCTGGTGATGAACCTCCAGATCCTAATCTGTTTATTGAGCCCATCACTGAAGAGAGAGCATC
ACGGACTCTCTACCGAATCGAGTTGCTTCGACGCTTACGGGAACAAGTTTTATGCCACCCCCTT
TTAGAAGATCGGCTGGCATTGTGTCAGCCTCCAGGTCTTGAATTGCCCAAATGGTGGGAACCTG
TCCGTCACGATGGGGAGCTCCTCCGAGGAGCAGCCCGCCATGGGGTGAGCCAAACAGACTGCAA
CATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTATATGCAGAACCATCAG
GCAGGAGCATCAGCTGCATCCCTGTCACGATGCTCCACTCCACTGCTGCACCAGCAGTGTACCT
CACGCACTGCTTCACCATCACCCCTGCGCCCAGATGTTCCTGCTGAAAAGTCACCTGAGGAGAA
TGCTGTTCAGGTCCCCAGTCTGGACAGTCTGACTTTAAAACTAGAGGATGAGGTGGTGGCTAGG
AGCCGACTCACCCCACAAGACTATGAAATTCGTGTAGCCTCTTCAGATACAGCCCCTCTGTCCC
GGAGTGTTCCGCCAGTCAAACTGGAGGATGACGATGATTCAGACTCTGAGCTGGACTTGAGCAA
GTTGTCACCATCGTCCTCTTCATCTTCATCCTCCTCCAGCTCCAGCTCCAGCAGTGATGAGAGT
GAAGATGAGAAGGAAGAGAAGTTAACTGCTGACCGGTCCCGCCCAAAGCTCTATGATGAAGAGA
GCCTTCTGTCCCTTACTATGTCCCAAGATGGATTCCCAAATGAAGATGGAGAACAAATGACCCC
TGAGTTGCTGCTGCTGCAGGAAAGACAAAGAGCCTCTGAATGGCCCAAGGATCGTGTTCTGATA
AACCGCATTGACCTCGTCTGCCAGGCTGTACTCTCAGGGAAATGGCCTTCTAACCGCCGGAGCC
AGGAAATGACAACAGGAGGAATTTTGGGGCCAGGAAACCATTTATTAGACAGTCCCTCTTTGAC
CCCAGGAGAATATGGGGACTCTCCGGTCCCCACACCACGAAGCAGCAGTGCAGCTTCCATGGTA
GAGGAAGAAGCATCTGCGGTCACCACAGCAGCAGCCCAATTTACTAAACTTCGGCGAGGCATGG
ACGAGAAAGAGTTTACAGTTCAGATCAAAGATGAAGAAGGATTGAAGTTAACATTCCAGAAGCA
TAGATTGATGGCTAATGGTGTAATGGGAGATGGACATCCACTGTTTCATAAGAAGAAGGGGAAC
AGGAAAAAGCTAGTAGAGTATATGGAGGAACGTAGAAAACAGAAGTGGCAGAGATGTAAAAAAA
ATAATAAGACAGAATTGAACTGTTTGGGAATGGAACCAGTCCAGCCAGCCAACTCTAGAAATGG
GAAAAAGGGTCACTATGCTGAAACTGCGTTCAACCGGGTTTTGCCAGGGCCTATTGCACCAGAA
AACAGCAAGAAACGGGTCCGCAGGACAAGACCAGACCTTTCTAAGATGATGGCCCTGATGCAGG
GTGGAAGCACTGGGTCCCTATCTCTGCATAACACCTTTCAACACAGCAGTAGTAACCTACAGTC
TGTGTCGTCTCTGGGTCACAGCAGTGCCACTTCTGCATCTCTGCCTTTCATGCCGTTTGTGATG
GGTGGTGCAGCAGCACCCCCTCATGTAGACTCCAGCACCATGCTTCATCATCACCACCACCACC
CCCACCCCCACCATCACCACCATCACCATCCAGGCTTGAGAACCACTGGCTACCCTTCTTCACC
AGCTACTACCACCTCTGGTACTGCCTTGCGGTTACCAACACTGCAGCATGAGGACGATGATGAA
GAGGAGGATGAAGATGATGATGATTTATCTCAGGGCTATGATAGCTCAGAAAGGGACTTCTCAC
TCATTGATGACCCTATGATGCCAGCCAACTCAGACTCCAGTGATGATGCTGACGACTGAAGCCC
TAATATAGACCCGTGCTGGGTGGCTGCTGGAATCCCTTACTCTGGCCCTTGGACTTTGGAAATG
TGGGAGGGGCAGGGAACAATATGGGGAAACCCAAGACTTCAGGAGGTGAAAAGGAAAAGAAAAA
AAAAAGGAAAAAAAAAAAAACAAAAAACTCGTACCCGATTGCTCCCAGTTTTGAGAGGATTGGG
TGGGCAGGGGAACTCCTAAAAAATAATAAATGACCACTTCCTCGTTTCTGGGGGAGCAAAGGAG
CTTAGAGCAGCTGGTGTGCTCACCCCTCCCCAGACACCTCCATTAACCACAGACTATGTAGCGC
TGGCCCTAGCCTCTGGCAGAGCCTGTTCCTGGCCAAACTGTGGATACAGCTGGAGGGTCAGGGA
CTGTTACCTTCCTTCCCCTTGGCATTAATAAATTTAAGTTAATCCTTT

hide sequence

RefSeq Acc Id:

XM_039093643 ⟹ XP_038949571

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	27,388,807 - 27,438,959 (-)	NCBI
mRatBN7.2	15	24,915,312 - 24,965,461 (-)	NCBI

RefSeq Acc Id:

XM_063274617 ⟹ XP_063130687

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	27,379,288 - 27,438,958 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001334590	(Get FASTA)	NCBI Sequence Viewer
	XP_006251970	(Get FASTA)	NCBI Sequence Viewer
	XP_006251971	(Get FASTA)	NCBI Sequence Viewer
	XP_006251972	(Get FASTA)	NCBI Sequence Viewer
	XP_006251974	(Get FASTA)	NCBI Sequence Viewer
	XP_038949571	(Get FASTA)	NCBI Sequence Viewer
	XP_063130687	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF89678	(Get FASTA)	NCBI Sequence Viewer
	EDL88472	(Get FASTA)	NCBI Sequence Viewer
	EDL88473	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000022593
	ENSRNOP00000071948
	ENSRNOP00000096922.1
GenBank Protein	Q9JIX5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_006251974 ⟸ XM_006251912
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2QBK0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGSGDVGNSSAS DLVPPPEETASTELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTPTSGLLQVSKSQEI LSQGNPFMGVSATAVSPSNTGGQPSQSAPKIVILKAPPNSSVTGAHVAQIQAQGITSTAQPLVA GTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLATKVPGNQAAVQRIVQPSRPVKQLVLQPVKGS APAGNPGATGPPLKPAVTLTSTPAQGESKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQ LAALTQAKSAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSSQPQPQPPPSAQPLTLSSVQQAQIM GPGQNPGQRLSVPLKMVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASCAPHTAGKTGMEE NRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK EEKPKKSKTAAASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRS NRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVPEPDGETLPSMQFFVENPSEED AAIVDKVLSMRVVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTK MAQMRHFFHEDEEPFNPDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVD EGKIREFKRIQSRHPELKRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASR QMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKL LDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAI LKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTM MELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKV LIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKA VLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIE SEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHF STLKDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKR RMTERDVETICRAILVYCLLHYRGDENIKSFIWDLISPAENGKTKELQNHSVFHVSPFPGLSIP VPRGRKGKKVKSQSTFDIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVI GDQAEKVLGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCF LEKAGRPDDKAIAAEHRVLDNFSDLVEGIDFDKDCEDPEYKPLQGPPKDPDDEGDPLMMMDEEI SVIDGDEAPVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAF KLKEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDNMQFHWDRFRTFARLDKKTDESLTKYFH GFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLAL CQPPGLELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGASAAS LSRCSTPLLHQQCTSRTASPSPLRPDVPAEKSPEENAVQVPSLDSLTLKLEDEVVARSRLTPQD YEIRVASSDTAPLSRSVPPVKLEDDDDSDSELDLSKLSPSSSSSSSSSSSSSSSDESEDEKEEK LTADRSRPKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVC QAVLSGKWPSNRRSQEMTTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMVEEEASAV TTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHRLMANGVMGDGHPLFHKKKGNRKKLVEY MEERRKQKWQRCKKNNKTELNCLGMEPVQPANSRNGKKGHYAETAFNRVLPGPIAPENSKKRVR RTRPDLSKMMALMQGGSTGSLSLHNTFQHSSSNLQSVSSLGHSSATSASLPFMPFVMGGAAAPP HVDSSTMLHHHHHHPHPHHHHHHHPGLRTTGYPSSPATTTSGTALRLPTLQHEDDDEEEDEDDD DLSQGYDSSERDFSLIDDPMMPANSDSSDDADD hide sequence

RefSeq Acc Id:	XP_006251970 ⟸ XM_006251908
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2R557 (UniProtKB/TrEMBL), A0A8L2QBK0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGSGDVGNSSAS DLVPPPEETASTELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTPTSGLLQVSKSQEI LSQGNPFMGVSATAVSPSNTGGQPSQSAPKIVILKAPPNSSVTGAHVAQIQAQGITSTAQPLVA GTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLATKVPGNQAAVQRIVQPSRPVKQLVLQPVKGS APAGNPGATGPPLKPAVTLTSTPAQGESKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQ LAALTQAKSAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSSQPQPQPPPSAQPLTLSSVQQAQIM GPGQNPGQRLSVPLKMVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASCAPHTAGKTGMEE NRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK EEKPKKSKTAAASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRS NRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVPEPDGETLPSMQFFVENPSEED AAIVDKVLSMRVVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTK MAQMRHFFHEDEEPFNPDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVD EGKIREFKRIQSRHPELKRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASR QMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKL LDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAI LKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTM MELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKV LIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKA VLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIE SEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHF STLKDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKR RMTERDVETICRAILVYCLLHYRGDENIKSFIWDLISPAENGKTKELQNHSVFHVSPFPGLSIP VPRGRKGKKVKSQSTFDIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVI GDQAEKVLGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCF LEKAGRPDDKAIAAEHRVLDNFSDLVEGIDFDKDCEDPEYKPLQGPPKDPDDEGDPLMMMDEEI SVIDGDEAPVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAF KLKEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDNMQFHWDRFRTFARLDKKTDESLTKYFH GFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLAL CQPPGLELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGASAAS LSRCSTPLLHQQCTSRTASPSPLRPDVPAEKSPEENAVQVPSLDSLTLKLEDEVVARSRLTPQD YEIRVASSDTAPLSRSVPPVKLEDDDDSDSELDLSKLSPSSSSSSSSSSSSSSSDESEDEKEEK LTADRSRPKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVC QAVLSGKWPSNRRSQEMTTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMVEEEASAV TTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHRLMANGVMGDGHPLFHKKKGNRKKLVEL EVECMEEPNHLDVDLETRIPVINKVDGTLLVGDEAPRRAELDMWLQGHPEFAVDPRFLAYMEER RKQKWQRCKKNNKTELNCLGMEPVQPANSRNGKKGHYAETAFNRVLPGPIAPENSKKRVRRTRP DLSKMMALMQGGSTGSLSLHNTFQHSSSNLQSVSSLGHSSATSASLPFMPFVMGGAAAPPHVDS STMLHHHHHHPHPHHHHHHHPGLRTTGYPSSPATTTSGTALRLPTLQHEDDDEEEDEDDDDLSQ GYDSSERDFSLIDDPMMPANSDSSDDADD hide sequence

RefSeq Acc Id:	XP_006251971 ⟸ XM_006251909
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2R557 (UniProtKB/TrEMBL), A0A8L2QBK0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGSGDVGNSSAS DLVPPPEETASTELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTPTSGLLQVSKSQEI LSQGNPFMGVSATAVSPSNTGGQPSQSAPKIVILKAPPNSSVTGAHVAQIQAQGITSTAQPLVA GTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLATKVPGNQAAVQRIVQPSRPVKQLVLQPVKGS APAGNPGATGPPLKPAVTLTSTPAQGESKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQ LAALTQAKSAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSSQPQPQPPPSAQPLTLSSVQQAQIM GPGQNPGQRLSVPLKMVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASCAPHTAGKTGMEE NRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK EEKPKKSKTAAASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRS NRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVPEPDGETLPSMQFFVENPSEED AAIVDKVLSMRVVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTK MAQMRHFFHEDEEPFNPDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVD EGKIREFKRIQSRHPELKRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASR QMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKL LDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAI LKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTM MELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKV LIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKA VLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIE SEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHF STLKDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKR RMTERDVETICRAILVYCLLHYRGDENIKSFIWDLISPAENGKTKELQNHSVFHVSPFPGLSIP VPRGRKGKKVKSQSTFDIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVI GDQAEKVLGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCF LEKAGRPDDKAIAAEHRVLDNFSDLVEGIDFDKDCEDPEYKPLQGPPKDPDDEGDPLMMMDEEI SVIDGDEAPVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAF KLKEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDNMQFHWDRFRTFARLDKKTDESLTKYFH GFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLAL CQPPGLELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGASAAS LSRCSTPLLHQQCTSRTASPSPLRPDVPAEKSPEENAVQVPSLDSLTLKLEDEVVARSRLTPQD YEIRVASSDTAPLSRSVPPVKLEDDDDSDSELDLSKLSPSSSSSSSSSSSSSSSDESEDEKEEK LTADRSRPKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVC QAVLSGKWPSNRRSQEMTTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMVEEEASAV TTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHRLMANGVMGDGHPLFHKKKGNRKKLVEL EVECMEEPNHLDVDLETRIPVINKVDGTLLVGDEAPRRAELDMWLQGHPEFAVDPRFLAYMEER RKQKWQRCKKNNKTELNCLGMEPVQPANSRNGKKGHYAETAFNRVLPGPIAPENSKKRVRRTRP DLSKMMALMQGGSTGSLSLHNTFQHSSSNLQSVSSLGHSSATSASLPFMPFVMGGAAAPPHVDS STMLHHHHHHPHPHHHHHHHPGLRTTGYPSSPATTTSGTALRLPTLQHEDDDEEEDEDDDDLSQ GYDSSERDFSLIDDPMMPANSDSSDDADD hide sequence

RefSeq Acc Id:	XP_006251972 ⟸ XM_006251910
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2R557 (UniProtKB/TrEMBL), A0A8L2QBK0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGSGDVGNSSAS DLVPPPEETASTELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTPTSGLLQVSKSQEI LSQGNPFMGVSATAVSPSNTGGQPSQSAPKIVILKAPPNSSVTGAHVAQIQAQGITSTAQPLVA GTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLATKVPGNQAAVQRIVQPSRPVKQLVLQPVKGS APAGNPGATGPPLKPAVTLTSTPAQGESKRITLVLQQPQSGGPQGHRHVVLGSLPGKIVLQGNQ LAALTQAKSAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSSQPQPQPPPSAQPLTLSSVQQAQIM GPGQNPGQRLSVPLKMVLQPQAGSSQGASSGLSVVKVLSASEVAALSSPASCAPHTAGKTGMEE NRRLEHQKKQEKANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSSGERLK EEKPKKSKTAAASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRS NRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPEPVPEPDGETLPSMQFFVENPSEED AAIVDKVLSMRVVKKELPSGQYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTK MAQMRHFFHEDEEPFNPDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVD EGKIREFKRIQSRHPELKRVNRPQANAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNC ILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASR QMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKL LDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKLQAI LKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNMPNLLNTM MELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKV LIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGI NLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKA VLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIE SEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHF STLKDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFKR RMTERDVETICRAILVYCLLHYRGDENIKSFIWDLISPAENGKTKELQNHSVFHVSPFPGLSIP VPRGRKGKKVKSQSTFDIHKADWIRKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVI GDQAEKVLGGAIASEIDIWFPVVDQLEVPTTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCF LEKAGRPDDKAIAAEHRVLDNFSDLVEGIDFDKDCEDPEYKPLQGPPKDPDDEGDPLMMMDEEI SVIDGDEAPVTQQPGHLFWPPGSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAF KLKEIARREKQQRWTRREQTDFYRVVSTFGVEYDPDNMQFHWDRFRTFARLDKKTDESLTKYFH GFVAMCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLAL CQPPGLELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGASAAS LSRCSTPLLHQQCTSRTASPSPLRPDVPAEKSPEENAVQVPSLDSLTLKLEDEVVARSRLTPQD YEIRVASSDTAPLSRSVPPVKLEDDDDSDSELDLSKLSPSSSSSSSSSSSSSSSDESEDEKEEK LTADRSRPKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVLINRIDLVC QAVLSGKWPSNRRSQEMTTGGILGPGNHLLDSPSLTPGEYGDSPVPTPRSSSAASMVEEEASAV TTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHRLMANGVMGDGHPLFHKKKGNRKKLVEL EVECMEEPNHLDVDLETRIPVINKVDGTLLVGDEAPRRAELDMWLQGHPEFAVDPRFLAYMEER RKQKWQRCKKNNKTELNCLGMEPVQPANSRNGKKGHYAETAFNRVLPGPIAPENSKKRVRRTRP DLSKMMALMQGGSTGSLSLHNTFQHSSSNLQSVSSLGHSSATSASLPFMPFVMGGAAAPPHVDS STMLHHHHHHPHPHHHHHHHPGLRTTGYPSSPATTTSGTALRLPTLQHEDDDEEEDEDDDDLSQ GYDSSERDFSLIDDPMMPANSDSSDDADD hide sequence

Ensembl Acc Id:

ENSRNOP00000071948 ⟸ ENSRNOT00000087722

Ensembl Acc Id:

ENSRNOP00000022593 ⟸ ENSRNOT00000022593

RefSeq Acc Id:	NP_001334590 ⟸ NM_001347661
- UniProtKB:	Q9JIX5 (UniProtKB/Swiss-Prot), A0A8L2QBK0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038949571 ⟸ XM_039093643
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000096922 ⟸ ENSRNOT00000096813

RefSeq Acc Id:	XP_063130687 ⟸ XM_063274617
- Peptide Label:	isoform X2
- UniProtKB:	Q9JIX5 (UniProtKB/Swiss-Prot), A0A8L2QBK0 (UniProtKB/TrEMBL)

Protein Domains

Chromo Helicase ATP-binding Helicase C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JIX5-F1-model_v2	AlphaFold	Q9JIX5	1-2581	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699637

Promoter ID:

EPDNEW_R10161

Type:

initiation region

Name:

Chd8_1

Description:

chromodomain helicase DNA binding protein 8

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	28,672,509 - 28,672,569	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620696	AgrOrtholog
BioCyc Gene	G2FUF-13983	BioCyc
Ensembl Genes	ENSRNOG00000025011	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000022593	ENTREZGENE
	ENSRNOT00000087722	ENTREZGENE
	ENSRNOT00000096813.1	UniProtKB/Swiss-Prot
Gene3D-CATH	2.40.50.40	UniProtKB/Swiss-Prot
	3.40.5.120	UniProtKB/Swiss-Prot
	3.40.50.10810	UniProtKB/Swiss-Prot
	3.40.50.300	UniProtKB/Swiss-Prot
	Homeodomain-like	UniProtKB/Swiss-Prot
InterPro	BRK_domain	UniProtKB/Swiss-Prot
	BRK_sf	UniProtKB/Swiss-Prot
	CHD	UniProtKB/Swiss-Prot
	CHD8	UniProtKB/Swiss-Prot
	Chromo-like_dom_sf	UniProtKB/Swiss-Prot
	Chromo/chromo_shadow_dom	UniProtKB/Swiss-Prot
	Chromo_domain	UniProtKB/Swiss-Prot
	Helicase_ATP-bd	UniProtKB/Swiss-Prot
	Helicase_C	UniProtKB/Swiss-Prot
	HTH_CHD6-9	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	SNF2-like_sf	UniProtKB/Swiss-Prot
	SNF2/RAD54-like_C	UniProtKB/Swiss-Prot
	SNF2_N	UniProtKB/Swiss-Prot
KEGG Report	rno:65027	UniProtKB/Swiss-Prot
NCBI Gene	65027	ENTREZGENE
PANTHER	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9	UniProtKB/Swiss-Prot
	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 9	UniProtKB/Swiss-Prot
Pfam	BRK	UniProtKB/Swiss-Prot
	Chromo	UniProtKB/Swiss-Prot
	Helicase_C	UniProtKB/Swiss-Prot
	HTH_CHD8_8th	UniProtKB/Swiss-Prot
	SNF2_N	UniProtKB/Swiss-Prot
PhenoGen	Chd8	PhenoGen
PROSITE	CHROMO_2	UniProtKB/Swiss-Prot
	HELICASE_ATP_BIND_1	UniProtKB/Swiss-Prot
	HELICASE_CTER	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000025011	RatGTEx
SMART	BRK	UniProtKB/Swiss-Prot
	CHROMO	UniProtKB/Swiss-Prot
	DEXDc	UniProtKB/Swiss-Prot
	HELICc	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF160481	UniProtKB/Swiss-Prot
	SSF52540	UniProtKB/Swiss-Prot
	SSF54160	UniProtKB/Swiss-Prot
UniProt	A0A8L2QBK0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2R557	ENTREZGENE, UniProtKB/TrEMBL
	A6KEG8_RAT	UniProtKB/TrEMBL
	CHD8_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Chd8	chromodomain helicase DNA binding protein 8	Loc65027	beta-catenin binding protein	Symbol and Name updated	1299863	APPROVED
2002-08-07	Loc65027	beta-catenin binding protein			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the nucleus
gene_process	involved in inhibition of beta-catenin-dependent Tcf activation and axis formation

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)