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Gene: Pou6f1 (POU class 6 homeobox 1) Rattus norvegicus

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Symbol:

Pou6f1

Name:

POU class 6 homeobox 1

RGD ID:

620615

Description:

Enables DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human POU6F1 (POU class 6 homeobox 1); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

brain-5; brain-specific homeobox/POU domain protein 5; brn-5 protein; Brn5; POU domain, class 6, transcription factor 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	POU6F1 (POU class 6 homeobox 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Pou6f1 (POU domain, class 6, transcription factor 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pou6f1 (POU class 6 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	POU6F1 (POU class 6 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	POU6F1 (POU class 6 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pou6f1 (POU class 6 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	POU6F1 (POU class 6 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	POU6F1 (POU class 6 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pou6f1 (POU class 6 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pou6f1 (POU class 6 homeobox 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	POU6F1 (POU class 6 homeobox 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Homo sapiens (human):	POU6F1 (POU class 6 homeobox 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Pou6f1 (POU domain, class 6, transcription factor 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pou6f1 (POU class 6 homeobox 1)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pou6f1 (POU class 6 homeobox 1)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YOX1	Alliance	DIOPT (Hieranoid\|OrthoFinder)
Drosophila melanogaster (fruit fly):	pdm3	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	pou6f1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pou6f1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	133,556,506 - 133,580,004 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	133,558,928 - 133,579,671 (-)	Ensembl				GRCr8
mRatBN7.2	7	131,677,719 - 131,700,869 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	131,677,719 - 131,701,101 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	7	131,680,141 - 131,686,843 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	133,482,252 - 133,489,011 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	135,707,827 - 135,714,586 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	135,621,490 - 135,628,243 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	142,201,614 - 142,225,256 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	142,204,036 - 142,210,738 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	140,006,269 - 140,030,316 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	139,325,783 - 139,332,485 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	128,155,577 - 128,162,279 (-)	NCBI		Celera
RGSC_v3.1	7	139,402,219 - 139,408,918 (-)	NCBI
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

lung adenocarcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

calcium atom (EXP)

calcium(0) (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

ethanol (ISO)

lead(0) (ISO)

methimazole (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

ozone (ISO)

paracetamol (EXP)

permethrin (EXP)

sotorasib (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trametinib (ISO)

triadimefon (EXP)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA-templated transcription (IEA)

negative regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nuclear body (ISO)

nucleus (IEA,ISO)

Molecular Function

DNA binding (IDA,IEA,ISO)

DNA-binding transcription factor activity (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IEA)

sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Brn-5 is a divergent POU domain factor highly expressed in layer IV of the neocortex.	Andersen B, etal., J Biol Chem 1993 Nov 5;268(31):23390-8.
2.	Expression of the POU transcription factor Brn-5 is an early event in the terminal differentiation of CNS neurons.	Cui H and Bulleit RF, J Neurosci Res 1998 Jun 15;52(6):625-32.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	GOA pipeline	RGD automated data pipeline
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	A human POU domain gene, mPOU, is expressed in developing brain and specific adult tissues.	Wey E, etal., Eur J Biochem 1994 Mar 15;220(3):753-62.
10.	POU6F1 cooperates with RORA to suppress the proliferation of lung adenocarcinoma by downregulation HIF1A signaling pathway.	Xiao W, etal., Cell Death Dis. 2022 May 3;13(5):427. doi: 10.1038/s41419-022-04857-y.

Additional References at PubMed

PMID:8463278	PMID:8645295	PMID:15024082	PMID:17933456	PMID:36317259

Genomics

Comparative Map Data

Pou6f1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	133,556,506 - 133,580,004 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	133,558,928 - 133,579,671 (-)	Ensembl				GRCr8
mRatBN7.2	7	131,677,719 - 131,700,869 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	131,677,719 - 131,701,101 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	7	131,680,141 - 131,686,843 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	133,482,252 - 133,489,011 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	135,707,827 - 135,714,586 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	135,621,490 - 135,628,243 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	142,201,614 - 142,225,256 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	142,204,036 - 142,210,738 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	140,006,269 - 140,030,316 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	139,325,783 - 139,332,485 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	128,155,577 - 128,162,279 (-)	NCBI		Celera
RGSC_v3.1	7	139,402,219 - 139,408,918 (-)	NCBI
Cytogenetic Map	7	q36	NCBI

POU6F1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	51,186,936 - 51,218,062 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	51,186,936 - 51,218,062 (-)	Ensembl			hg38	GRCh38
GRCh37	12	51,580,719 - 51,611,846 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	49,869,232 - 49,897,744 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	49,869,231 - 49,897,744	NCBI
Celera	12	50,382,323 - 50,412,965 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	48,613,565 - 48,644,376 (-)	NCBI		HuRef
CHM1_1	12	51,546,938 - 51,577,697 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	51,149,818 - 51,180,972 (-)	NCBI		T2T-CHM13v2.0

Pou6f1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	100,473,199 - 100,497,949 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	100,473,199 - 100,497,865 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	100,575,318 - 100,600,061 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	100,575,318 - 100,599,984 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	100,405,749 - 100,416,796 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	100,403,352 - 100,414,399 (-)	NCBI		MGSCv36	mm8
Celera	15	102,728,946 - 102,740,065 (-)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	56.35	NCBI

Pou6f1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955547	1,685,365 - 1,704,994 (-)	Ensembl
ChiLan1.0	NW_004955547	1,685,365 - 1,712,028 (-)	NCBI	ChiLan1.0	ChiLan1.0

POU6F1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	42,968,226 - 42,999,070 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	42,964,989 - 42,995,832 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	37,535,656 - 37,566,481 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	38,419,517 - 38,472,746 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	38,430,434 - 38,472,746 (+)	Ensembl			panPan2	panpan1.1

POU6F1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	3,646,255 - 3,669,780 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	3,649,424 - 3,666,855 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	42,586,324 - 42,615,830 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	3,687,455 - 3,716,983 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	3,698,849 - 3,716,932 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	3,663,568 - 3,684,080 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	3,650,695 - 3,671,231 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	42,983,324 - 43,012,809 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pou6f1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	64,353,527 - 64,372,248 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	8,795,272 - 8,810,484 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	8,795,650 - 8,811,220 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

POU6F1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	5	17,222,730 - 17,239,769 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

POU6F1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	47,389,111 - 47,417,640 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	198,679,739 - 198,711,665 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pou6f1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	1,058,851 - 1,076,322 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624816	1,048,185 - 1,076,322 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pou6f1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	262,511,686 - 262,532,648 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pou6f1
80 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	254
Count of miRNA genes:	167
Interacting mature miRNAs:	194
Transcripts:	ENSRNOT00000006095
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	121393075	137014596	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	132099939	137014596	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	119280025	135560836	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	115313999	136544683	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH143890

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	131,695,776 - 131,695,923 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	142,219,672 - 142,219,818	NCBI	Rnor6.0
Rnor_5.0	7	140,024,327 - 140,024,473	UniSTS	Rnor5.0
RGSC_v3.4	7	139,342,113 - 139,342,259	UniSTS	RGSC3.4
Celera	7	128,171,213 - 128,171,359	UniSTS
RH 3.4 Map	7	1074.3	UniSTS
Cytogenetic Map	7	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	161	91	90	59	92	59	6	356	192	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078247	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063262866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L23204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006095 ⟹ ENSRNOP00000006095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	131,680,141 - 131,686,843 (-)	Ensembl
Rnor_6.0 Ensembl	7	142,204,036 - 142,210,738 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100238 ⟹ ENSRNOP00000080135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	133,558,928 - 133,579,671 (-)	Ensembl
mRatBN7.2 Ensembl	7	131,677,719 - 131,701,101 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114805 ⟹ ENSRNOP00000085229

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	131,685,991 - 131,701,000 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000129593 ⟹ ENSRNOP00000101977

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	133,558,928 - 133,562,976 (-)	Ensembl

RefSeq Acc Id:

NM_001105746 ⟹ NP_001099216

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,558,928 - 133,565,630 (-)	NCBI
mRatBN7.2	7	131,680,141 - 131,686,843 (-)	NCBI
Rnor_6.0	7	142,204,036 - 142,210,738 (-)	NCBI
Rnor_5.0	7	140,006,269 - 140,030,316 (-)	NCBI
RGSC_v3.4	7	139,325,783 - 139,332,485 (-)	RGD
Celera	7	128,155,577 - 128,162,279 (-)	RGD

Sequence:

show sequence

CGGAAAGATTTCTGCAGCAGTGCTCCCCTTCCCTGTGACTGTGCTCCCCTTCCCTGTGACTGTG
CTCCCCTCCCCTATGACTATGCTCTTCCTCCCCTGTGACTGTGCTCCCCTTCCCCAAGACTGTG
CTCCCTTTCTTTCAACTGTATTTCCCCTCCTGTGACTGTGCTCCCCTTCCCAGAGACTGTGCTC
TCCTGTGACTGTGCTCCTCTTCTCTGAGACTGTGCTCCCTTCCCCCAAGACTATGTTCCCCTTC
CCAGAGACTGTGTTCCCCTCCCCTATCACTGTGTTCCCCTCCCCTGTTACTGTGCTCCCTTCCC
CTGTGACTCTGCTCTCCTCCCCTGTGACTGTGCTCCCCTTCCCCATGACTGTGCTCCCCTTCCC
CGTGACTGTGCTCCCCTTCCCCATGACTGTGCTCCCCTTCCCCGTGACTGTGCTCCCCTCCCCC
GTCACTATGCTCTCCTCCCCCGTGACTGTGCTCCCCTTCCCCGTGACTGTGCTCCCCTTCCCCG
TGACTGTGCTCCCCTTCCCCGTGACTGTGCTCCCCTTCCCCGTGACTGTGCTCCCCTTCCCTGC
TATCCCCCTGTACTTGTCTCCCTAGTCTTGAGTACCAGCCAGTGGACTAGAGCCTGCAGCCCAG
TACCCTCAGCCCTCTTCCCTCTCTGTGCCCTTTCTTGCCTCTCGGTCTCTGAGCAAGGCTCTTC
CTCCACCCACAGATCAGTGCCGCGTCCCTTGGGGGACAGACGCAAATCCTGGGCTCCCTCACTA
CAGCTCCAGTTATTACCAACACCATTCCCAGCATGCCCGGGATCAGCAGTCCGATCCTCACCAA
TGCTCAGGGACAGGTTATTGGAGCACTTCCATGGGTAGTGAACTCAGCCAGTGTGGCCACACCA
GCACCAGCACAGAGCCTGCAGGTCCAAGCTGTGACTCCCCAGCTCTTGTTGAATGCCCAGGGCC
AGGTGATCGCAACACTAGCCAGCAGCCCCCTGCCTCAACCTGTGGCTGTCCGGAAGCCAAGCAC
ACCGGAGTCCCCTGCAAAGAGTGAGGTGCAACCCATCCAGCCGACACAAGCCGTGCCCCCACCT
GCTGTAATCCTCACCAGCCCAGCTCCAGCACTCAAGCCATCAGCCTCAGCTCCCATCCCAATCA
CCTGCTCAGAGACACCTACAGTCAGTCAGTTGGTATCAAAACCGCACACTCCGAGTCTGGATGA
GGACGGGATCAACTTAGAAGAGATCCGGGAGTTTGCCAAGAATTTTAAGATCCGGAGGCTCTCC
CTGGGTCTGACACAGACCCAGGTGGGCCAGGCTCTGACCGCAACAGAGGGGCCAGCCTACAGCC
AATCAGCCATCTGCAGGTTCGAGAAGTTAGACATCACACCCAAGAGTGCCCAGAAGCTGAAGCC
GGTTTTGGAAAAGTGGTTGAACGAGGCAGAGCTCCGGAACCAGGAAGGCCAGCAGAATCTGATG
GAGTTTGTGGGCGGCGAGCCCTCCAAGAAACGCAAGCGGCGTACTTCCTTCACACCACAGGCCA
TAGAGGCTCTCAATGCCTACTTTGAGAAAAACCCCCTGCCCACCGGCCAGGAGATCACCGAGAT
CGCTAAGGAGCTCAACTATGACCGTGAGGTGGTGAGGGTCTGGTTCTGTAATCGACGCCAGACA
CTCAAGAACACCAGCAAGCTGAATGTCTTTCAGATCCCCTAGGGCTCGGGGTCAGCGTGTTCCT
TGTGCGAATCCCTCAGCAGTCAGCTGAAGTCACTGAGTGGCAGTACTGTGGGCAGCTGTGCTTG
CCCTCGGTCATGAGACTCCACCTGTGCATGTGTGTCAATGCCTGCCTCTTCTGCCCACATATGT
CACACCCTGGGGAGGCCCGAGGGGCTGCATGAGAGCCCTAGGCTCTGGGCTGGGCATGTGGAAG
GAGGGGGTTGGTGGGGTCCTTAGAAAAGCACTTTGCCGAGGTGGTTTCTGAAGGGTGAATTCTG
GTTGAGAACCAGGAAGGCTCTGTCTTTGGGGCAGGGCCGTAGCAACTCTTGGGGACAACTGTGT
AGTGGCTCTTGGTTTTGGTGACGTCCTTTCCCCCTTCCCCTCACTCCTCTGTGGCTGTGCCGGT
GTGACAACACACCGGGTGGAACTGCAGCCTCACACTGCCTCCCTTCCTCTGAATATGGGCACAC
TGAACCCCCTGAAAGGACTGAGGAATCCAGAGAGTCGTGGTGTGCTGCTCAGACC

hide sequence

RefSeq Acc Id:

XM_017594569 ⟹ XP_017450058

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,566,014 (-)	NCBI
mRatBN7.2	7	131,677,719 - 131,687,222 (-)	NCBI
Rnor_6.0	7	142,201,614 - 142,211,214 (-)	NCBI

Sequence:

show sequence

TGTTGCCACCGTTGCTGCCCCCACCCCCAAGCCAGTGGATGCTGCCCCACAGATCACCGTCCAG
CCTGCAGGCTTCGCTTTTAGCCCAGGGATCGTAAGCTGCTGCCCTCACCCGGGACTGACGAGGG
ATGGACCAAAGCTTGGGCCAAGGGTGGAACGTCCCCCACAGTGGAGGATCAGCTCCTTGAACAC
AGCCCTTCCAGACACATCAGCAAAGATGGGCTCCCATTGAGATCAGTGCCGCGTCCCTTGGGGG
ACAGACGCAAATCCTGGGCTCCCTCACTACAGCTCCAGTTATTACCAACACCATTCCCAGCATG
CCCGGGATCAGCAGTCCGATCCTCACCAATGCTCAGGGACAGGTTATTGGAGCACTTCCATGGG
TAGTGAACTCAGCCAGTGTGGCCACACCAGCACCAGCACAGAGCCTGCAGGTCCAAGCTGTGAC
TCCCCAGCTCTTGTTGAATGCCCAGGGCCAGGTGATCGCAACACTAGCCAGCAGCCCCCTGCCT
CAACCTGTGGCTGTCCGGAAGCCAAGCACACCGGAGTCCCCTGCAAAGAGTGAGGTGCAACCCA
TCCAGCCGACACAAGCCGTGCCCCCACCTGCTGTAATCCTCACCAGCCCAGCTCCAGCACTCAA
GCCATCAGCCTCAGCTCCCATCCCAATCACCTGCTCAGAGACACCTACAGTCAGTCAGTTGGTA
TCAAAACCGCACACTCCGAGTCTGGATGAGGACGGGATCAACTTAGAAGAGATCCGGGAGTTTG
CCAAGAATTTTAAGATCCGGAGGCTCTCCCTGGGTCTGACACAGACCCAGGTGGGCCAGGCTCT
GACCGCAACAGAGGGGCCAGCCTACAGCCAATCAGCCATCTGCAGGTTCGAGAAGTTAGACATC
ACACCCAAGAGTGCCCAGAAGCTGAAGCCGGTTTTGGAAAAGTGGTTGAACGAGGCAGAGCTCC
GGAACCAGGAAGGCCAGCAGAATCTGATGGAGTTTGTGGGCGGCGAGCCCTCCAAGAAACGCAA
GCGGCGTACTTCCTTCACACCACAGGCCATAGAGGCTCTCAATGCCTACTTTGAGAAAAACCCC
CTGCCCACCGGCCAGGAGATCACCGAGATCGCTAAGGAGCTCAACTATGACCGTGAGGTGGTGA
GGGTCTGGTTCTGTAATCGACGCCAGACACTCAAGAACACCAGCAAGCTGAATGTCTTTCAGAT
CCCCTAGGGCTCGGGGTCAGCGTGTTCCTTGTGCGAATCCCTCAGCAGTCAGCTGAAGTCACTG
AGTGGCAGTACTGTGGGCAGCTGTGCTTGCCCTCGGTCATGAGACTCCACCTGTGCATGTGTGT
CAATGCCTGCCTCTTCTGCCCACATATGTCACACCCTGGGGAGGCCCGAGGGGCTGCATGAGAG
CCCTAGGCTCTGGGCTGGGCATGTGGAAGGAGGGGGTTGGTGGGGTCCTTAGAAAAGCACTTTG
CCGAGGTGGTTTCTGAAGGGTGAATTCTGGTTGAGAACCAGGAAGGCTCTGTCTTTGGGGCAGG
GCCGTAGCAACTCTTGGGGACAACTGTGTAGTGGCTCTTGGTTTTGGTGACGTCCTTTCCCCCT
TCCCCTCACTCCTCTGTGGCTGTGCCGGTGTGACAACACACCGGGTGGAACTGCAGCCTCACAC
TGCCTCCCTTCCTCTGAATATGGGCACACTGAACCCCCTGAAAGGACTGAGGAATCCAGAGAGT
CGTGGTGTGCTGCTCAGACCCACTGTCTGCCTTGATCTCGAGGGATGAAGGTTCCCAAACTGAA
GCCAGGGGGTTGGAAACCCTAGGTTAGGAGCTGTGAGGCCTCTCCCTGGGTCCCAGTGGTGGTG
ATATTATGCTAAGTCGAGTCAAACCAAGTTGAAAGGAAGCTAGAGTGAACTCTCCAGCCCTGGA
GAGTGTTAGGTCTGCGGCAGGTCTGGAATTTATAAAGTAAATAAGGCCACCCACCCAGATTTTC
ATCTAATTTTCGTTTGCAGCTGTCTTCCGACACAGGGGTATGCGAAAGGGCTTGGGAAACTAAC
GCATACAGCGGCAGAGGATATAGATTCTGACTTTCTCCCTCTCTTGTGCCCTGACCCATCTCAG
TCCACTACTGAGACGTCTTCAAAGGAGCAAACTGATCGATAAACCAGACGGTGAGGAGCTGGCG
TAGGGAGGAAGACAGTATCCAGATGGATGATGATTCGGGAGGTCTCTTGTTGAGGCTGACTTAT
AACTCTAGTTTTGTTTGTAACTTTTACGTCTTGGAGGTCTCCAAAGACCACACTTTGTCCAGTT
GTAGACCAAGTCTGTGTGTGAGCAATGCCCCACCCCTCCACCTCCCCACTCCCGTGCTCCTCTG
AGCCAACAGTGCCCAGGTCAGGCTTCCCTCACTCAGTAGGTGATGGCAATCGGGGGACTGGCAA
CACATGGAAACCAGCTTCCAGCCACAGAGAGGCTAGCCAGATGTTTTACTTCAGTGCATTGCCC
GGGAATGTAGCTCACTGGGAGGGAACTTAGCAAGTACAAGGCTCTAGAGTCAGTCTGTAGCACC
GAGGGGAAAGGGATTCCCCCAGTATTTGATTTCAAGAAGTCGGGAAAGAGCTAAGACGTTCGCT
CAGATAACCCCCCCAACAAGTGGCAGGTGTCGACTATCTTGCACTACTGGGGTTGGTTTGTTGG
GTTTTTGTTTTGTTTTGTCTGAGATAGGATCACACTTAGCTCAGGCTAACCTCGAACTTGTAGT
TGAAGATGACCTGATCCTCCTGTCTCCACCTCCCAAGTGCTGGGATTGCAGTCACGTTCTGCTG
TGCCTGGCTCTTCTCACTCCATAGCCTTACGGAGCCCACTCTCTGGCTGATGTCGACATCACAT
GATCTACCCTGAGGAAACGACTCTCAAACAAGGACACCATGCAGTCTCCGCTGGTCCCGGTGCA
GAGACACTAGGACCCGGCTTCCTCTAGTGTTCTCTTTCCTGATGACTGTTAGTCCCTCTTGGGT
CCTGCAGTGCCAGTGTGGAGGACCTCTTGGTAACTCTGACATGGAGAGGAGGGCAGTTGTGTGT
TGATTCACCACACCAACACACACACACACACACACACTGCTGCATTCCGACTAAGGAAACCTGC
TGAAGTCTGTCAGGAATAGGAGACAAGTACGCAGCTTCCCTGACCCTGGCTCCCAAGAAGGAAT
ATGTTCCCAGAGCAATGCTAGGTCATGTGATTACCAACCAGCCTCCATGAGATGGGAAGTTAGC
TTAGAGTCCCGAAACTTAGCAAGGTGATGCCCTCGAGAAAATCAAATGCAGCTTTTCTTGCTCA
AAACCGGCACTCAGGAGGTTATACACAGTGCAGCCATGCTGTGGACGCCGGAGAGGGTACCATC
TGTTCTGTGCGTGGGGGTGGGGAATCTCGAACCACTGGTCTAAATTAAGCCTGGCCATGCGGCG
TTCTCAAACCATCCTTCATCTAAATCTGTCTTCCCAAGGCTGGGCTAGAATGAACCATTTTCTC
CTGTGTTGGAAAGACGCACGGGTCTTTCAGGAGAACAGTAGCAGAGCCCACATGTTTACTGGCT
GGACTACTCAAGTAAGGGGTGCAAGTGTATAAAGCGTTCCCAAAGTGGGGTCCGCTTTGGCCTT
TGACCTCTGCCCCTGTCCCCCAACCTAAGCCACTGATCTACATACAGTCTTTGTTATTTTGGGT
AGCATTAGACTCTAAAAACGTTAGCAGTTTTATTTTGAAAGCACCTTCTCAGACTTAAGCTCGA
GCTCCATGGCTCTCTCGCCTTGGAAAGGGGAGAGTGGGAGGAAGTGGTTCAACTGTATGGTTGG
TTTGTTTTAAGCAATGGGAAACCAAACTCTCTGTGGCCCCGCTGAGTCAGCTGCGCCCTTCGAC
CCTGCACTATGGCACTTCACTCAAGCAAAGTTCACAGAAGAAACTGGTCACATGAACCGTGAAC
GCACGTGAGTTTGGCATGAGAACACCTGATGTGTCTGTGTTCTTGGAAATCCAGTCAACTTCCT
ATACCCAGGACTCCTTTCCCGCCTGGTGGGCCGCCTCCCACAGTCTCCCGGCACGGGGGGCACC
GCCCACGAAAGCTGGAGAGGAGGATGGGGGAGTACTGCCGTAGCGTGTGAATAAACAGTATTTT
TTCTTTCGTA

hide sequence

RefSeq Acc Id:

XM_039078243 ⟹ XP_038934171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,580,004 (-)	NCBI
mRatBN7.2	7	131,677,719 - 131,700,862 (-)	NCBI

RefSeq Acc Id:

XM_039078244 ⟹ XP_038934172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,580,004 (-)	NCBI
mRatBN7.2	7	131,677,719 - 131,700,869 (-)	NCBI

RefSeq Acc Id:

XM_039078245 ⟹ XP_038934173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,579,473 (-)	NCBI
mRatBN7.2	7	131,677,719 - 131,700,862 (-)	NCBI

RefSeq Acc Id:

XM_039078246 ⟹ XP_038934174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,580,004 (-)	NCBI
mRatBN7.2	7	131,677,719 - 131,700,862 (-)	NCBI

RefSeq Acc Id:

XM_039078247 ⟹ XP_038934175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,564,785 - 133,579,481 (-)	NCBI
mRatBN7.2	7	131,685,998 - 131,700,862 (-)	NCBI

RefSeq Acc Id:

XM_039078248 ⟹ XP_038934176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,579,471 (-)	NCBI
mRatBN7.2	7	131,677,719 - 131,696,007 (-)	NCBI

RefSeq Acc Id:

XM_063262864 ⟹ XP_063118934

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,579,472 (-)	NCBI

RefSeq Acc Id:

XM_063262865 ⟹ XP_063118935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,579,472 (-)	NCBI

RefSeq Acc Id:

XM_063262866 ⟹ XP_063118936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,571,518 (-)	NCBI

RefSeq Acc Id:

XR_010052928

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	133,556,506 - 133,579,472 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099216	(Get FASTA)	NCBI Sequence Viewer
	NP_001425992	(Get FASTA)	NCBI Sequence Viewer
	XP_017450058	(Get FASTA)	NCBI Sequence Viewer
	XP_038934171	(Get FASTA)	NCBI Sequence Viewer
	XP_038934172	(Get FASTA)	NCBI Sequence Viewer
	XP_038934173	(Get FASTA)	NCBI Sequence Viewer
	XP_038934174	(Get FASTA)	NCBI Sequence Viewer
	XP_038934175	(Get FASTA)	NCBI Sequence Viewer
	XP_038934176	(Get FASTA)	NCBI Sequence Viewer
	XP_063118934	(Get FASTA)	NCBI Sequence Viewer
	XP_063118935	(Get FASTA)	NCBI Sequence Viewer
	XP_063118936	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL86938	(Get FASTA)	NCBI Sequence Viewer
	EDL86939	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006095.4
	ENSRNOP00000080135
GenBank Protein	P56223	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001099216 ⟸ NM_001105746

- Sequence:

show sequence

MPGISSPILTNAQGQVIGALPWVVNSASVATPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPL
PQPVAVRKPSTPESPAKSEVQPIQPTQAVPPPAVILTSPAPALKPSASAPIPITCSETPTVSQL
VSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLD
ITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKN
PLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQIP

hide sequence

RefSeq Acc Id:	XP_017450058 ⟸ XM_017594569
- Peptide Label:	isoform X5
- UniProtKB:	P56223 (UniProtKB/Swiss-Prot), A6KCK3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPGISSPILTNAQGQVIGALPWVVNSASVATPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPL PQPVAVRKPSTPESPAKSEVQPIQPTQAVPPPAVILTSPAPALKPSASAPIPITCSETPTVSQL VSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLD ITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKN PLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQIP hide sequence

Ensembl Acc Id:

ENSRNOP00000006095 ⟸ ENSRNOT00000006095

RefSeq Acc Id:	XP_038934172 ⟸ XM_039078244
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038934174 ⟸ XM_039078246
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038934173 ⟸ XM_039078245
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038934171 ⟸ XM_039078243
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038934176 ⟸ XM_039078248
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038934175 ⟸ XM_039078247
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000080135 ⟸ ENSRNOT00000100238

Ensembl Acc Id:

ENSRNOP00000085229 ⟸ ENSRNOT00000114805

RefSeq Acc Id:	XP_063118935 ⟸ XM_063262865
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063118934 ⟸ XM_063262864
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063118936 ⟸ XM_063262866
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000101977 ⟸ ENSRNOT00000129593

Protein Domains

Homeobox POU-specific

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P56223-F1-model_v2	AlphaFold	P56223	1-301	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620615	AgrOrtholog
BioCyc Gene	G2FUF-32015	BioCyc
Ensembl Genes	ENSRNOG00000004595	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000070769	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000006095.7	UniProtKB/Swiss-Prot
	ENSRNOT00000100238	ENTREZGENE
Gene3D-CATH	1.10.260.40	UniProtKB/Swiss-Prot
	Homeodomain-like	UniProtKB/Swiss-Prot
InterPro	Homeobox-like_sf	UniProtKB/Swiss-Prot
	Homeobox_dom	UniProtKB/Swiss-Prot
	Lambda_DNA-bd_dom_sf	UniProtKB/Swiss-Prot
	POU	UniProtKB/Swiss-Prot
	POU_dom	UniProtKB/Swiss-Prot
	POU_domain_TF	UniProtKB/Swiss-Prot
KEGG Report	rno:116545	UniProtKB/Swiss-Prot
NCBI Gene	116545	ENTREZGENE
PANTHER	POU DOMAIN	UniProtKB/Swiss-Prot
	POU DOMAIN, CLASS 6, TRANSCRIPTION FACTOR 1	UniProtKB/Swiss-Prot
Pfam	Homeodomain	UniProtKB/Swiss-Prot
	Pou	UniProtKB/Swiss-Prot
PhenoGen	Pou6f1	PhenoGen
PRINTS	POUDOMAIN	UniProtKB/Swiss-Prot
PROSITE	HOMEOBOX_2	UniProtKB/Swiss-Prot
	POU_1	UniProtKB/Swiss-Prot
	POU_2	UniProtKB/Swiss-Prot
	POU_3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000004595	RatGTEx
	ENSRNOG00000070769	RatGTEx
SMART	HOX	UniProtKB/Swiss-Prot
	POU	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46689	UniProtKB/Swiss-Prot
	SSF47413	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZPH6_RAT	UniProtKB/TrEMBL
	A0ABK0L1C2_RAT	UniProtKB/TrEMBL
	A6KCK3	ENTREZGENE, UniProtKB/TrEMBL
	P56223	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-09-24	Pou6f1	POU class 6 homeobox 1	Pou6f1	POU domain, class 6, transcription factor 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Pou6f1	POU domain, class 6, transcription factor 1			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Pou6f1	POU domain, class 6, transcription factor 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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