Tnni2 (troponin I2, fast skeletal type) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tnni2 (troponin I2, fast skeletal type) Rattus norvegicus
Analyze
Symbol: Tnni2
Name: troponin I2, fast skeletal type
RGD ID: 62050
Description: Predicted to enable troponin T binding activity. Predicted to contribute to actin binding activity. Involved in relaxation of skeletal muscle. Part of troponin complex. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita and distal arthrogryposis type 2B1. Orthologous to human TNNI2 (troponin I2, fast skeletal type); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: troponin 1, type 2; troponin I skeletal fast 2; troponin I type 2 (skeletal, fast); troponin I, fast skeletal muscle; troponin I, fast-twitch isoform; troponin I, skeletal, fast 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81206,882,358 - 207,027,034 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1207,024,416 - 207,027,038 (+)EnsemblGRCr8
mRatBN7.21197,595,012 - 197,597,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1197,594,813 - 197,597,560 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1205,967,715 - 205,970,256 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,053,555 - 213,056,096 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01205,727,708 - 205,730,249 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01215,609,110 - 215,611,652 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,609,036 - 215,611,658 (+)Ensemblrn6Rnor6.0
Rnor_5.01222,504,477 - 222,507,019 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41202,687,630 - 202,690,172 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1195,213,827 - 195,216,369 (+)NCBICelera
RGSC_v3.11202,847,345 - 202,849,888 (+)NCBI
Cytogenetic Map1q41NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamiprid  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
Azoxymethane  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
cerivastatin  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
dextran sulfate  (ISO)
Dibutyl phosphate  (ISO)
diisononyl phthalate  (ISO)
dimethylarsinic acid  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
genistein  (EXP,ISO)
graphite  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
L-methionine  (ISO)
lead diacetate  (ISO)
lidocaine  (EXP)
methylarsonic acid  (ISO)
methylparaben  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-nitrosodiethylamine  (ISO)
naphthalenes  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pioglitazone  (ISO)
piperonyl butoxide  (ISO)
progesterone  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
spermine  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
triticonazole  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
XL147  (ISO)
zidovudine  (ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (ISO)
sarcomere  (IEA)
troponin complex  (IBA,IDA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway   (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Coupled expression of troponin T and troponin I isoforms in single skeletal muscle fibers correlates with contractility. Brotto MA, etal., Am J Physiol Cell Physiol. 2006 Feb;290(2):C567-76. Epub 2005 Sep 28.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Variation in expression of calcium-handling proteins is associated with inter-individual differences in mechanical performance of rat (Rattus norvegicus) skeletal muscle. James RS, etal., J Exp Biol. 2011 Nov 1;214(Pt 21):3542-8. doi: 10.1242/jeb.058305.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Mutations in genes encoding fast-twitch contractile proteins cause distal arthrogryposis syndromes. Sung SS, etal., Am J Hum Genet. 2003 Mar;72(3):681-90.
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:14673191   PMID:17194691   PMID:18331830   PMID:20455213   PMID:28864299  


Genomics

Comparative Map Data
Tnni2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81206,882,358 - 207,027,034 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1207,024,416 - 207,027,038 (+)EnsemblGRCr8
mRatBN7.21197,595,012 - 197,597,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1197,594,813 - 197,597,560 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1205,967,715 - 205,970,256 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,053,555 - 213,056,096 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01205,727,708 - 205,730,249 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01215,609,110 - 215,611,652 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,609,036 - 215,611,658 (+)Ensemblrn6Rnor6.0
Rnor_5.01222,504,477 - 222,507,019 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41202,687,630 - 202,690,172 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1195,213,827 - 195,216,369 (+)NCBICelera
RGSC_v3.11202,847,345 - 202,849,888 (+)NCBI
Cytogenetic Map1q41NCBI
TNNI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,838,981 - 1,841,678 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,838,981 - 1,841,680 (+)Ensemblhg38GRCh38
GRCh37111,860,211 - 1,862,908 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,817,479 - 1,819,484 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34111,817,478 - 1,819,484NCBI
Celera111,897,991 - 1,900,668 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef111,651,132 - 1,653,809 (+)NCBIHuRef
CHM1_1111,859,040 - 1,861,717 (+)NCBICHM1_1
T2T-CHM13v2.0111,924,780 - 1,927,477 (+)NCBIT2T-CHM13v2.0
Tnni2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397141,995,553 - 141,998,147 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7141,995,545 - 141,998,147 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm387142,441,816 - 142,444,410 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,441,808 - 142,444,410 (+)Ensemblmm10GRCm38
MGSCv377149,628,373 - 149,630,310 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367142,251,858 - 142,253,795 (+)NCBIMGSCv36mm8
Celera7142,198,149 - 142,200,086 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.93NCBI
Tnni2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,650,515 - 13,652,247 (+)Ensembl
ChiLan1.0NW_00495542213,649,827 - 13,652,342 (+)NCBIChiLan1.0ChiLan1.0
TNNI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,261,792 - 4,263,429 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,472,482 - 3,474,532 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0111,874,633 - 1,878,343 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,906,467 - 1,910,082 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,902,554 - 1,910,084 (+)EnsemblpanPan2panpan1.1
TNNI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,076,816 - 46,079,362 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,077,581 - 46,079,361 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1844,687,069 - 44,689,584 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01846,758,239 - 46,760,755 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1846,758,973 - 46,760,754 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,205,598 - 46,208,111 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01845,785,901 - 45,788,417 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,532,037 - 46,534,553 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tnni2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049471,484,719 - 1,487,208 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936816740,187 - 741,210 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936816738,754 - 741,328 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNNI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,251,527 - 1,253,893 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.121,251,566 - 1,253,883 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TNNI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,657,631 - 1,661,575 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603898,853,950 - 98,858,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnni2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,736,136 - 14,737,870 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476714,735,413 - 14,737,968 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tnni2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v127,032,089 - 7,034,706 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tnni2
833 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000027487
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1160111531262090437Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753266453731Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1186658830266453731Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1177339686222339686Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1181059071226059071Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1181059071226059071Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1182039247227039247Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1183564652228564652Rat
1600395Niddm69Non-insulin dependent diabetes mellitus QTL 694.140.0002blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1205233991267096252Rat
1600396Niddm68Non-insulin dependent diabetes mellitus QTL 684.970.0003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1186658830266453731Rat
1600397Edcs4Endometrial carcinoma susceptibility QTL 42.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)1176288899270518180Rat
631838Niddm36Non-insulin dependent diabetes mellitus QTL 360.01insulin secretion trait (VT:0003564)calculated pancreatic islet insulin release measurement (CMO:0001217)1193964073238964073Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1160573753210707719Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1162548015270518180Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1181059071226059071Rat
1600388Niddm67Non-insulin dependent diabetes mellitus QTL 675.840.000004blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1205233991267096252Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1132966869252856240Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1152919152268496042Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1139442053223964440Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1160573753210707719Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1165278545210278545Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1181059071226059071Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1160111531262090437Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
1300145Rf7Renal function QTL 72.96urine creatinine amount (VT:0010540)urine creatinine level (CMO:0000125)1194575422239575422Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1168063662213063662Rat
8655655Arrd2Age-related retinal degeneration QTL 27.79retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1193400541238400541Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1159894717207261263Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1163992710208992710Rat
1358898Bp255Blood pressure QTL 2553.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1200449456256003563Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1182535316227535316Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1146080545243492863Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1181059071226059071Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1153679879232414077Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1160574007235238518Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1181059071226059071Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1160111426262090599Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1181059071226059071Rat
8552891Epfw5Epididymal fat weight QTL 54.4epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1202543537247543537Rat
1359018Hrtrt20Heart rate QTL 203.08heart pumping trait (VT:2000009)heart rate (CMO:0000002)1194786607207590403Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1162753891207753891Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1154961463266453731Rat
1358292Cm37Cardiac mass QTL 376.28e-07heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)1205674651250674651Rat
634312Bp143Blood pressure QTL 14330.0002arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1203300512229359342Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1180739993225739993Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1191190115223964326Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1172718770228180370Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1111949780210707719Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631260Tcas2Tongue tumor susceptibility QTL 24.93tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1201915593208479939Rat
2312564Glom18Glomerulus QTL 182.40.003kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1194786607262083703Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1188241285250779312Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1139442053223964440Rat
1300168Bp170Blood pressure QTL 1702.76arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1192995199237995199Rat
61403Niddm4Non-insulin dependent diabetes mellitus QTL 4blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1201464383246464383Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1186298393231298393Rat
1641926Teswt2Testicular weight QTL 22.82testis mass (VT:1000644)both testes wet weight (CMO:0000175)1203675682248675682Rat
631658Cm7Cardiac mass QTL 75.320.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)1205674651250674651Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1111949780210707719Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1185979875230979875Rat
1582206Kidm33Kidney mass QTL 336.9kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)1197807365233480676Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1160573753266453731Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1160573753210707719Rat
634338Hcar4Hepatocarcinoma resistance QTL 44.6liver integrity trait (VT:0010547)liver tumorous lesion number to liver area ratio (CMO:0001210)1202851915223964440Rat
6480777Insul17Insulin level QTL 173.86blood insulin amount (VT:0001560)blood insulin level area under curve (AUC) (CMO:0000351)1206690418207509562Rat
8655855Arrd3Age-related retinal degeneration QTL 33.07lens clarity trait (VT:0001304)cataract incidence/prevalence measurement (CMO:0001585)1193400541238400541Rat
6480783Insul19Insulin level QTL 194.33blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1203300512213659238Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1165707719210707719Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1173363824227535316Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1191260175236260175Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1111949780228180370Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1185857683270518180Rat
2325727Pia41Pristane induced arthritis QTL 41joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1188241285233241285Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1160573753210707719Rat

Markers in Region
PMC15822P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21197,596,548 - 197,597,164 (+)MAPPERmRatBN7.2
Rnor_6.01215,610,647 - 215,611,262NCBIRnor6.0
Rnor_5.01222,506,014 - 222,506,629UniSTSRnor5.0
RGSC_v3.41202,689,167 - 202,689,782UniSTSRGSC3.4
Celera1195,215,364 - 195,215,979UniSTS
Cytogenetic Map1q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 12 65 95 78 78 47 43 47 6 277 140 11 69 68 79 31 9 9

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M73701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000027487   ⟹   ENSRNOP00000027487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1207,024,463 - 207,027,033 (+)Ensembl
mRatBN7.2 Ensembl1197,594,813 - 197,597,560 (+)Ensembl
Rnor_6.0 Ensembl1215,609,731 - 215,611,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076140   ⟹   ENSRNOP00000068152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,609,645 - 215,611,654 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076187   ⟹   ENSRNOP00000068190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1207,024,416 - 207,027,038 (+)Ensembl
mRatBN7.2 Ensembl1197,594,813 - 197,597,560 (+)Ensembl
Rnor_6.0 Ensembl1215,609,036 - 215,611,658 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,609,068 - 215,610,455 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,610,799 - 215,611,654 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078903   ⟹   ENSRNOP00000071521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,610,368 - 215,611,555 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000087781   ⟹   ENSRNOP00000072812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1215,610,426 - 215,611,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000138301   ⟹   ENSRNOP00000112773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1207,025,551 - 207,027,038 (+)Ensembl
RefSeq Acc Id: NM_017185   ⟹   NP_058881
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81207,024,490 - 207,027,032 (+)NCBI
mRatBN7.21197,595,012 - 197,597,554 (+)NCBI
Rnor_6.01215,609,110 - 215,611,652 (+)NCBI
Rnor_5.01222,504,477 - 222,507,019 (+)NCBI
RGSC_v3.41202,687,630 - 202,690,172 (+)RGD
Celera1195,213,827 - 195,216,369 (+)RGD
Sequence:
RefSeq Acc Id: XM_063287030   ⟹   XP_063143100
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81206,882,358 - 207,027,034 (+)NCBI
Protein Sequences
Protein RefSeqs NP_058881 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143100 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42149 (Get FASTA)   NCBI Sequence Viewer  
  EDM12130 (Get FASTA)   NCBI Sequence Viewer  
  EDM12131 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000027487
  ENSRNOP00000027487.7
GenBank Protein P27768 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058881   ⟸   NM_017185
- UniProtKB: P27768 (UniProtKB/Swiss-Prot),   F8WG17 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072812   ⟸   ENSRNOT00000087781
Ensembl Acc Id: ENSRNOP00000071521   ⟸   ENSRNOT00000078903
Ensembl Acc Id: ENSRNOP00000068190   ⟸   ENSRNOT00000076187
Ensembl Acc Id: ENSRNOP00000068152   ⟸   ENSRNOT00000076140
Ensembl Acc Id: ENSRNOP00000027487   ⟸   ENSRNOT00000027487
RefSeq Acc Id: XP_063143100   ⟸   XM_063287030
- Peptide Label: isoform X1
- UniProtKB: F8WG17 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000112773   ⟸   ENSRNOT00000138301

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P27768-F1-model_v2 AlphaFold P27768 1-182 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690561
Promoter ID:EPDNEW_R1086
Type:single initiation site
Name:Tnni2_1
Description:troponin I2, fast skeletal type
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01215,609,068 - 215,609,128EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62050 AgrOrtholog
BioCyc Gene G2FUF-56913 BioCyc
Ensembl Genes ENSRNOG00000020276 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000027487 ENTREZGENE
  ENSRNOT00000027487.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.350 UniProtKB/Swiss-Prot
  6.10.250.180 UniProtKB/Swiss-Prot
InterPro Troponin UniProtKB/Swiss-Prot
  Troponin_I UniProtKB/Swiss-Prot
  Troponin_sf UniProtKB/Swiss-Prot
KEGG Report rno:29389 UniProtKB/Swiss-Prot
NCBI Gene 29389 ENTREZGENE
PANTHER TROPONIN I UniProtKB/Swiss-Prot
  TROPONIN I, FAST SKELETAL MUSCLE UniProtKB/Swiss-Prot
Pfam Troponin UniProtKB/Swiss-Prot
PhenoGen Tnni2 PhenoGen
RatGTEx ENSRNOG00000020276 RatGTEx
Superfamily-SCOP SSF90250 UniProtKB/Swiss-Prot
TIGR TC218641
UniProt A0A8L2QZW1_RAT UniProtKB/TrEMBL
  A0ABK0LP77_RAT UniProtKB/TrEMBL
  A6HY49_RAT UniProtKB/TrEMBL
  F8WG17 ENTREZGENE, UniProtKB/TrEMBL
  P27768 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Tnni2  troponin I2, fast skeletal type  Tnni2  troponin I type 2 (skeletal, fast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Tnni2  troponin I type 2 (skeletal, fast)    troponin 1, type 2   Name updated 1299863 APPROVED
2002-06-10 Tnni2  troponin 1, type 2       Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression different isoforms are expressed in the various classes of vertebrate striated muscle cells 729969