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Gene: Sox5 (SRY-box transcription factor 5) Rattus norvegicus

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Symbol:

Sox5

Name:

SRY-box transcription factor 5

RGD ID:

620471

Description:

Enables cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cartilage development; cellular response to transforming growth factor beta stimulus; and positive regulation of cell differentiation. Predicted to act upstream of or within several processes, including negative regulation of DNA-templated transcription; neurogenesis; and regulation of timing of neuron differentiation. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SOX5 (SRY-box transcription factor 5); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Sox5l1; SRY (sex determining region Y)-box 5; SRY box 5; SRY-box containing gene 5; SRY-box containing gene 5-like 1; transcription factor SOX-5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SOX5 (SRY-box transcription factor 5)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Sox5 (SRY (sex determining region Y)-box 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sox5 (SRY-box transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SOX5 (SRY-box transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SOX5 (SRY-box transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sox5 (SRY-box transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SOX5 (SRY-box transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SOX5 (SRY-box transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sox5 (SRY-box transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sox5 (SRY-box transcription factor 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SOX5 (SRY-box transcription factor 5)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sox5 (SRY (sex determining region Y)-box 5)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sox5 (SRY (sex determining region Y)-box 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	egl-13	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sox102F	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Sox102F	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	sox5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	178,512,272 - 179,467,686 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	178,512,272 - 178,938,495 (-)	Ensembl				GRCr8
mRatBN7.2	4	176,781,375 - 177,736,833 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	176,785,892 - 177,736,852 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	183,088,517 - 183,461,996 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	178,872,831 - 179,246,322 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	177,493,406 - 177,866,892 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	178,062,267 - 179,031,991 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	178,066,165 - 178,441,547 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	242,266,295 - 243,221,217 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	181,558,995 - 181,931,117 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	165,313,274 - 165,629,808 (-)	NCBI		Celera
RGSC_v3.1	4	181,825,983 - 182,011,429 (-)	NCBI
Cytogenetic Map	4	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

autism spectrum disorder (ISO)

Cerebral Visual Impairment and Intellectual Disability (ISO)

Developmental Disease (ISO)

genetic disease (ISO)

Gilles de la Tourette syndrome (ISO)

intellectual disability (ISO)

Lamb-Shaffer Syndrome (ISO)

Muscle Hypotonia (ISO)

strabismus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

8-Br-cAMP (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

deguelin (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

diethylstilbestrol (ISO)

dimethyl sulfoxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

fenthion (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

genistein (EXP,ISO)

glyphosate (EXP)

leflunomide (ISO)

methapyrilene (ISO)

methidathion (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

phenobarbital (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

propiconazole (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

tributylstannane (ISO)

trichloroethene (EXP)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

warfarin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

asymmetric neuroblast division (IEA,ISO)

cartilage condensation (ISO,ISS)

cartilage development (ISO,ISS)

cell differentiation (IEA)

cell fate commitment (IBA,ISO)

cellular response to transforming growth factor beta stimulus (IEA,ISO)

central nervous system neuron differentiation (ISO)

chondrocyte differentiation (ISO,ISS)

DNA-templated transcription (IEA)

in utero embryonic development (ISO)

negative regulation of DNA-templated transcription (ISO)

oligodendrocyte differentiation (ISO)

positive regulation of cartilage development (IEA,ISO)

positive regulation of chondrocyte differentiation (IBA,IEA,ISO)

positive regulation of mesenchymal stem cell differentiation (IEA,ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of timing of neuron differentiation (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

transcription regulator complex (ISO)

Molecular Function

cis-regulatory region sequence-specific DNA binding (IDA,IEA)

DNA binding (IEA)

DNA-binding transcription factor activity (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

transcription cis-regulatory region binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesis.	Liu CF and Lefebvre V, Nucleic Acids Res. 2015 Sep 30;43(17):8183-203. doi: 10.1093/nar/gkv688. Epub 2015 Jul 6.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Sox5 and Sox6 are required for notochord extracellular matrix sheath formation, notochord cell survival and development of the nucleus pulposus of intervertebral discs.	Smits P and Lefebvre V, Development 2003 Mar;130(6):1135-48.
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:9755172	PMID:15634692	PMID:17084361	PMID:18215621	PMID:20668334	PMID:20940257	PMID:21073445	PMID:21401405	PMID:22344693	PMID:23946438	PMID:24854956	PMID:26345464
PMID:26525805

Genomics

Comparative Map Data

Sox5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	178,512,272 - 179,467,686 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	178,512,272 - 178,938,495 (-)	Ensembl				GRCr8
mRatBN7.2	4	176,781,375 - 177,736,833 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	176,785,892 - 177,736,852 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	183,088,517 - 183,461,996 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	178,872,831 - 179,246,322 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	177,493,406 - 177,866,892 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	178,062,267 - 179,031,991 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	178,066,165 - 178,441,547 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	242,266,295 - 243,221,217 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	181,558,995 - 181,931,117 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	165,313,274 - 165,629,808 (-)	NCBI		Celera
RGSC_v3.1	4	181,825,983 - 182,011,429 (-)	NCBI
Cytogenetic Map	4	q44	NCBI

SOX5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	23,529,504 - 24,562,650 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	23,529,504 - 24,562,544 (-)	Ensembl			hg38	GRCh38
GRCh37	12	23,682,438 - 24,715,425 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	23,576,498 - 24,606,647 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	28,833,198 - 29,862,278 (-)	NCBI		Celera
Cytogenetic Map	12	p12.1	NCBI
HuRef	12	23,452,599 - 24,484,456 (-)	NCBI		HuRef
CHM1_1	12	23,650,324 - 24,680,623 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	23,401,301 - 24,433,529 (-)	NCBI		T2T-CHM13v2.0

Sox5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	143,774,151 - 144,728,008 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	143,774,151 - 144,727,703 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	143,828,425 - 144,782,287 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	143,828,425 - 144,781,977 (-)	Ensembl			mm10	GRCm38
MGSCv37	6	143,781,349 - 144,158,078 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	143,790,051 - 144,166,639 (-)	NCBI		MGSCv36	mm8
Celera	6	146,885,590 - 147,265,302 (-)	NCBI		Celera
Cytogenetic Map	6	G3	NCBI
cM Map	6	76.14	NCBI

Sox5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	18,831,931 - 19,204,217 (-)	Ensembl
ChiLan1.0	NW_004955413	18,831,931 - 19,676,371 (-)	NCBI	ChiLan1.0	ChiLan1.0

SOX5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	72,253,383 - 73,284,141 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	72,249,780 - 73,280,539 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	62,361,631 - 62,780,805 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	64,973,019 - 65,391,500 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	64,971,818 - 65,388,694 (+)	Ensembl			panPan2	panpan1.1

SOX5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	22,857,661 - 23,855,709 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	23,452,985 - 23,851,380 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	22,515,990 - 23,511,350 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	23,058,695 - 24,061,457 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	23,059,559 - 24,061,452 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	22,871,574 - 23,867,072 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	22,890,892 - 23,887,914 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	22,685,794 - 23,683,255 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sox5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	84,725,370 - 85,677,233 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936548	3,213,466 - 3,599,425 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936548	3,213,305 - 3,599,876 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SOX5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	49,504,551 - 50,161,558 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	49,159,950 - 50,166,463 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	53,008,491 - 53,806,316 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SOX5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	23,298,622 - 24,131,712 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	23,303,325 - 23,715,492 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666069	10,803,456 - 11,833,677 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sox5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	14,985,942 - 15,378,465 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624752	14,986,146 - 15,382,687 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sox5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	1,576,650 - 1,945,796 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sox5
5929 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	114
Count of miRNA genes:	90
Interacting mature miRNAs:	98
Transcripts:	ENSRNOT00000020729
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	176806581	181925369	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	160623982	184426481	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat

Markers in Region

D9Rat28

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	178,704,201 - 178,704,525 (+)	Marker Load Pipeline
mRatBN7.2	4	176,973,326 - 176,973,650 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	178,253,454 - 178,253,777	NCBI	Rnor6.0
Rnor_5.0	4	242,456,468 - 242,456,791	UniSTS	Rnor5.0
RGSC_v3.4	4	181,645,676 - 181,646,000	RGD	RGSC3.4
RGSC_v3.4	4	181,645,677 - 181,646,000	UniSTS	RGSC3.4
Celera	4	165,498,972 - 165,499,295	UniSTS
RGSC_v3.1	4	181,890,801 - 181,891,124	RGD
RH 3.4 Map	4	1062.3	RGD
RH 3.4 Map	4	1062.3	UniSTS
Cytogenetic Map	4	q44	UniSTS

D4Got154

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	178,682,210 - 178,682,366 (+)	Marker Load Pipeline
mRatBN7.2	4	176,951,334 - 176,951,490 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	178,231,463 - 178,231,618	NCBI	Rnor6.0
Rnor_5.0	4	242,434,477 - 242,434,632	UniSTS	Rnor5.0
RGSC_v3.4	4	181,623,685 - 181,623,841	RGD	RGSC3.4
RGSC_v3.4	4	181,623,686 - 181,623,841	UniSTS	RGSC3.4
Celera	4	165,476,979 - 165,477,134	UniSTS
RGSC_v3.1	4	181,868,810 - 181,868,965	RGD
RH 3.4 Map	4	1013.5	RGD
RH 3.4 Map	4	1013.5	UniSTS
RH 2.0 Map	4	1105.3	RGD
Cytogenetic Map	4	q44	UniSTS

BE108803

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	176,860,248 - 176,860,432 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	178,141,125 - 178,141,308	NCBI	Rnor6.0
Rnor_5.0	4	242,344,099 - 242,344,282	UniSTS	Rnor5.0
RGSC_v3.4	4	180,472,699 - 180,472,882	UniSTS	RGSC3.4
Celera	4	165,387,487 - 165,387,670	UniSTS
RH 3.4 Map	4	1057.9	UniSTS
Cytogenetic Map	4	q44	UniSTS

RH134712

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	176,786,011 - 176,786,169 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	178,066,907 - 178,067,064	NCBI	Rnor6.0
Rnor_5.0	4	242,270,935 - 242,271,092	UniSTS	Rnor5.0
RGSC_v3.4	4	180,399,064 - 180,399,221	UniSTS	RGSC3.4
Celera	4	165,313,400 - 165,313,557	UniSTS
RH 3.4 Map	4	1057.9	UniSTS
Cytogenetic Map	4	q44	UniSTS

Sox5

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	176,786,012 - 176,786,632 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	178,066,908 - 178,067,527	NCBI	Rnor6.0
Rnor_5.0	4	242,270,936 - 242,271,555	UniSTS	Rnor5.0
RGSC_v3.4	4	180,399,065 - 180,399,684	UniSTS	RGSC3.4
Celera	4	165,313,401 - 165,314,020	UniSTS
Cytogenetic Map	4	q44	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	162	91	90	59	84	59	6	346	183	11	141	80	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001271267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592402	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285440	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB073719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC121477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC086415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020729 ⟹ ENSRNOP00000020729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	178,512,272 - 178,890,449 (-)	Ensembl
mRatBN7.2 Ensembl	4	176,785,892 - 177,736,852 (-)	Ensembl
Rnor_6.0 Ensembl	4	178,067,051 - 178,168,690 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000055542 ⟹ ENSRNOP00000052404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	178,512,272 - 178,890,449 (-)	Ensembl
mRatBN7.2 Ensembl	4	176,785,892 - 177,159,525 (-)	Ensembl
Rnor_6.0 Ensembl	4	178,066,787 - 178,441,547 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087434 ⟹ ENSRNOP00000073853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	178,512,272 - 178,938,495 (-)	Ensembl
mRatBN7.2 Ensembl	4	176,785,892 - 177,208,076 (-)	Ensembl
Rnor_6.0 Ensembl	4	178,066,165 - 178,441,547 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096663 ⟹ ENSRNOP00000079278

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	178,512,272 - 178,890,486 (-)	Ensembl
mRatBN7.2 Ensembl	4	176,785,892 - 177,736,852 (-)	Ensembl

RefSeq Acc Id:

NM_001014060 ⟹ NP_001014082

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,512,272 - 178,624,633 (-)	NCBI
mRatBN7.2	4	176,781,379 - 176,893,750 (-)	NCBI

RefSeq Acc Id:

NM_001271267 ⟹ NP_001258196

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,512,272 - 178,890,449 (-)	NCBI
mRatBN7.2	4	176,781,379 - 177,159,575 (-)	NCBI
Rnor_6.0	4	178,066,781 - 178,441,547 (-)	NCBI
Rnor_5.0	4	242,266,295 - 243,221,217 (-)	NCBI
Celera	4	165,313,274 - 165,629,808 (-)	NCBI

Sequence:

show sequence

TTGGACTGACTTGACAGGTTCAGTTGGAGCCGATCATAGGTGGCCGCTGTGACAAAGGGAAATT
GTGCTTTTCCAGCATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAGGATGTCTTCCAAG
CGACCAGCCTCTCCGTATGGGGAGACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAG
TGGAAGAGGAGGAGAGTGAGAGGCTCCCAGCCTTTCACCTTCCCTTACATGTGAGTTTTCCCAA
CAAGCCTCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACGCAAGAGGCTTGTGGTCCTAGG
ACCCCCGCTGCTCAGCACAGTACAATGGAAGTCGATGGCAATAAAGTTATGTCTTCATTAGCTC
CGTACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGTGGGGAGTCGGT
GTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTCGACACC
TTGAAGCAGAGGAAGATGGAGGAGCTGATCAAGAACGAGCCGGAAGACACTCCCAGCATTGAAA
AGCTCCTCTCCAAGGACTGGAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAAT
CAAAGGGACTCCTGAGAGCCTCGCTGAGAAGGAGCGGCAGCTCATGGGTATGATCAATCAGCTG
ACCAGTCTACGGGAGCAACTCCTGGCTGCCCATGATGAGCAGAAGAAGTTGGCTGCGTCTCAGA
TAGAGAAACAGCGCCAGCAGATGGAGTTGGCCAAGCAGCAGCAGGAGCAGATCGCAAGGCAACA
GCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTCCAGCAACAGATCCAGGTTCAAGGT
CAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCCGACCAGCGGACCCTCGCAGCAGCTGCCC
AACAAGGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCCGT
TCAGCTGATCCCAACCACCATGGCAGCTGCCGCTGCAGCGACACCAGGCTTAGGCCCACTCCAG
CTGCAGCAGTTCTATGCTGCCCAGCTAGCTGCAATGCAGGTTTCTCCAGGAGGGAAGCTCCTAG
GCCTACCCCAAGGCAACCTTGGTGCTGCCGTGTCTCCTACCAGCATTCACACAGACAAGAGCAC
AAACAGCCCACCACCCAAAAGCAAGGATGAAGTGGCCCAGCCACTGAACCTATCAGCTAAGCCC
AAGACCTCTGACGGCAAATCACCTGCGTCACCCACCTCTCCTCACATGCCAGCTCTGAGAATTA
ACAGTGGAGCGGGTCCCCTCAAAGCCTCTGTCCCAGCAGCGTTAGCTAGTCCTTCAGCGAGAGT
TAGCACAATAGGTTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCCCGCCAG
ATGAAGGAACAGCTGAGGCGGGAGCAGCAAGCGCTGGATGGGAAGGTGGCCGTAGTGAACAGCA
TAGGTATCAGCAACTGCCGGACAGAAAAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTT
GGCAGTTAAACAGAATGAAGAAGGGAAATTTAGCCATGGAATGATGGATTTCAACATGAGTGGG
GATTCTGACGGAAGCGCTGGAGTCTCAGAGTCGAGAATTTACAGGGAATCCAGGGGACGCGGTA
GCAATGAGCCGCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCGAAAGATGAACGGAG
GAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATCAGCAAGATACTGGGATCTCGT
TGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCGGCTCAGCAAAC
AGCACCTGGAGAAGTACCCAGACTACAAGTACAAACCCAGGCCGAAGCGCACTTGTCTGGTAGA
TGGGAAGAAACTGCGCATTGGAGAGTACAAGGCCATCATGCGGAATCGGAGGCAGGAAATGCGA
CAGTACTTCAACGTTGGGCAACAAGCACAGATCCCCATCGCTACGGCCGGTGTCGTGTACCCCG
GTGCCATCGCCATGGCAGGAATGCCGTCCCCTCACCTGCCCTCAGAGCACTCGAGCGTGTCCAG
CAGCCCAGAGCCCGGGATGCCCGTGATTCAGAGCACTTACGGCGTGAAGGGAGAGGAGCCTCAC
ATCAAGGAAGAAATCCAGGCTGAGGACATCAACGGAGAGATTTATGAGGAGTACGAGGAGGAGG
AGGAGGACCCCGACGTCGACTATGGGAGTGACAGCGAAAACCATATTGCAGGACAAGCCAACTG
ATCAGGGCCAACGGACCGCGGTGAGCTGAGGACTTGAAGAAGCCCTAGCTGGTTCATCCTTAGT
AGTGGCCAAGCACATTAACTCTCTCATACACTGACTGTTATTTTAACTGTTAGTCTTAAATAGT
TGGGATATCAGCTGACAAATAGACCTCAGCCTCAAAAGGCTCGGAAAGGAAAGAAAGAAAAATA
AAAAAAAAAAAACAAACAAACAAAAACTACAAGCAAACGTCATTGACAACAAGAGATCGAAATA
AGCTATGGGTAACCAATGCCAGTAAATCAGCTGCTACACCCCAGCACTGAAGTCTCACCCATCA
ACTTTTTTTTTTTTAAATAAACTTTATGGCTGTTTGTTCTATATTAGAAAATCCTCACTCAGGT
ACACAGTGCCAACAAGTGGCTTGTGAATGTGTTATGTTGTTCTGTGCGACAATTTTTAAAAAG

hide sequence

RefSeq Acc Id:

NM_001415821 ⟹ NP_001402750

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,512,272 - 178,890,449 (-)	NCBI
mRatBN7.2	4	176,781,379 - 177,159,575 (-)	NCBI

RefSeq Acc Id:

NM_001415822 ⟹ NP_001402751

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,512,272 - 178,890,449 (-)	NCBI
mRatBN7.2	4	176,781,379 - 177,159,575 (-)	NCBI

RefSeq Acc Id:

NM_001415823 ⟹ NP_001402752

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,512,272 - 178,890,449 (-)	NCBI
mRatBN7.2	4	176,781,379 - 177,159,575 (-)	NCBI

RefSeq Acc Id:

XM_006237604 ⟹ XP_006237666

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 178,890,462 (-)	NCBI
mRatBN7.2	4	176,781,375 - 177,159,576 (-)	NCBI
Rnor_6.0	4	178,062,267 - 178,441,601 (-)	NCBI
Rnor_5.0	4	242,266,295 - 243,221,217 (-)	NCBI

Sequence:

show sequence

GGGGGAGAGAGAGAGTGAGAAGAGACAGAAAGAGAATCCATTGGTTTAGAAGGTTTGGACTGAC
TTGACAGGTTCAGTTGGAGCCGATCATAGGTGGCCGCTGTGACAAAGGGAAATTGTGCTTTTCC
AGCATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAGGATGTCTTCCAAGCGACCAGCCT
CTCCGTATGGGGAGACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAGAGGA
GGAGAGTGAGAGGCTCCCAGCCTTTCACCTTCCCTTACATGTGAGTTTTCCCAACAAGCCTCAC
TCTGAGGAATTTCAGCCAGTTTCTCTGCTGACGCAAGAGGCTTGTGGTCCTAGGACCCCCGCTG
CTCAGCACAGTACAATGGAAGTCGATGGCAATAAAGTTATGTCTTCATTAGCTCCGTACAACTC
ATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGTGGGGAGTCGGTGTCGAGCGCA
GCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTCGACACCTTGAAGCAGA
GGAAGATGGAGGAGCTGATCAAGAACGAGCCGGAAGACACTCCCAGCATTGAAAAGCTCCTCTC
CAAGGACTGGAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATCAAAGGGACT
CCTGAGAGCCTCGCTGAGAAGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGTCTAC
GGGAGCAACTCCTGGCTGCCCATGATGAGCAGAAGAAGTTGGCTGCGTCTCAGATAGAGAAACA
GCGCCAGCAGATGGAGTTGGCCAAGCAGCAGCAGGAGCAGATCGCAAGGCAACAGCAGCAGCTT
CTGCAGCAACAACACAAAATCAACTTGCTCCAGCAACAGATCCAGCAGGTTCAAGGTCAGCTGC
CGCCATTGATGATTCCCGTGTTCCCTCCCGACCAGCGGACCCTCGCAGCAGCTGCCCAACAAGG
ATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCCGTTCAGCTG
ATCCCAACCACCATGGCAGCTGCCGCTGCAGCGACACCAGGCTTAGGCCCACTCCAGCTGCAGC
AGTTCTATGCTGCCCAGCTAGCTGCAATGCAGGTTTCTCCAGGAGGGAAGCTCCTAGGCCTACC
CCAAGGCAACCTTGGTGCTGCCGTGTCTCCTACCAGCATTCACACAGACAAGAGCACAAACAGC
CCACCACCCAAAAGCAAGGATGAAGTGGCCCAGCCACTGAACCTATCAGCTAAGCCCAAGACCT
CTGACGGCAAATCACCTGCGTCACCCACCTCTCCTCACATGCCAGCTCTGAGAATTAACAGTGG
AGCGGGTCCCCTCAAAGCCTCTGTCCCAGCAGCGTTAGCTAGTCCTTCAGCGAGAGTTAGCACA
ATAGGTTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCCCGCCAGATGAAGG
AACAGCTGAGGCGGGAGCAGCAAGCGCTGGATGGGAAGGTGGCCGTAGTGAACAGCATAGGTAT
CAGCAACTGCCGGACAGAAAAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTT
AAACAGAATGAAGAAGGGAAATTTAGCCATGGAATGATGGATTTCAACATGAGTGGGGATTCTG
ACGGAAGCGCTGGAGTCTCAGAGTCGAGAATTTACAGGGAATCCAGGGGACGCGGTAGCAATGA
GCCGCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCGAAAGATGAACGGAGGAAAATC
CTTCAGGCCTTTCCCGACATGCACAATTCCAACATCAGCAAGATACTGGGATCTCGTTGGAAAG
CTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCGGCTCAGCAAACAGCACCT
GGAGAAGTACCCAGACTACAAGTACAAACCCAGGCCGAAGCGCACTTGTCTGGTAGATGGGAAG
AAACTGCGCATTGGAGAGTACAAGGCCATCATGCGGAATCGGAGGCAGGAAATGCGACAGTACT
TCAACGTTGGGCAACAAGCACAGATCCCCATCGCTACGGCCGGTGTCGTGTACCCCGGTGCCAT
CGCCATGGCAGGAATGCCGTCCCCTCACCTGCCCTCAGAGCACTCGAGCGTGTCCAGCAGCCCA
GAGCCCGGGATGCCCGTGATTCAGAGCACTTACGGCGTGAAGGGAGAGGAGCCTCACATCAAGG
AAGAAATCCAGGCTGAGGACATCAACGGAGAGATTTATGAGGAGTACGAGGAGGAGGAGGAGGA
CCCCGACGTCGACTATGGGAGTGACAGCGAAAACCATATTGCAGGACAAGCCAACTGATCAGGG
CCAACGGACCGCGGTGAGCTGAGGACTTGAAGAAGCCCTAGCTGGTTCATCCTTAGTAGTGGCC
AAGCACATTAACTCTCTCATACACTGACTGTTATTTTAACTGTTAGTCTTAAATAGTTGGGATA
TCAGCTGACAAATAGACCTCAGCCTCAAAAGGCTCGGAAAGGAAAGAAAGAAAAATAAAAAAAA
AAAAACAAACAAACAAAAACTACAAGCAAACGTCATTGACAACAAGAGATCGAAATAAGCTATG
GGTAACCAATGCCAGTAAATCAGCTGCTACACCCCAGCACTGAAGTCTCACCCATCAACTTTTT
TTTTTTTAAATAAACTTTATGGCTGTTTGTTCTATATTAGAAAATCCTCACTCAGGTACACAGT
GCCAACAAGTGGCTTGTGAATGTGTTATGTTGTTCTGTGCGACAATTTTTAAAAAGAAATAAGT
TTTGTTCTTCTGTTCTGTTCTGGGGGGGTGGTTCTGGGTTTTCCTTTTTCTTTTTTTGTTAATT
TTTCTTTGCTTTTTGATTGTTATCTTGCACCCGACAGACCGGGGGAAGACTGCCGTCAGTCCCT
GCCCCCTGCCCCGCCCTCTCGATCGGTCTGCTTTCAGGATGGAGGCATGTGTGAGGGTGGGGCC
GGGGGTGGGGAGGGAGAGGAAAACAAGAGCCTACGTCTGCCTTCATTGCTTCTACCCGACAGAG
TCAGCAACTGTTTTCCTTAGAGACCCCCTAACCCTTGCACACGACACTACGTCTTTGAGCAAGT
GCCAAATTTGTACCGAAGCGATCACCAACTTCATTTGCTTATCCTTCCTTTCTCCTTGTTCTTC
TTCCGTTAGGACAGTGTTAAACCTTAGACAGTCCCTGGAAAGAGCTGACACACCAGCAACTGAT
GAGACTGGTTTTTGTTCTATTCTGGTTTTTTTTGTTTGTTTGTTTGTTTTTGTTTTCTTTTTTG
TTTTATGGAAACTGTAGGTGCCGTTCTCAGGTGAAAAGAGAGAGAGAGAGACAGAAATTTAGAG
AAAAAAAATATTTTCTGATCTTGGATTTCTGTGTGCGTGTGTGTGAGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTATGGTACATTAGATGCATTCCTATTAGGGA
ATAATGTCCGGCCATTGTGAGCAACACCCCCCATGTGGGACAGCATTCCACCCCTCCTGAGCAA
GCGGGCTTAGAAGCAACCTTAACCTTGATTTTGCACTTCCAGGGGCAATGGAACTAAGTGTAAA
GTTCGGAAACTATATTTTTCAGTTTCTAGTATGCTCATTATAGGGTGGACCTGGTGACCCTGTG
TCACGGGCATGTACATGACAGACATGGAAACTACCAGCCAAATGCTTCTGGAGGCTCCTTCTCC
CTGGACAATTTGCTTTTTCTGACGTTTGCTTCTTAGTGATCCGTGTGTGTATGCCTGTGTGCGT
GTGTTTGTTTTTCCTGTCAAAACTTTTGAGCAAAGCAATCAACGGTCTTGACTGAACCCGTTTG
CCATTTTTCAGAAATAACGGAATTAGCTTATGCCTCCATTGTTCCGACCTTTCCTGACGGGGAA
ACAGAACTGATGGTTTTGTAAGATTTTTTTCTTTTTATCTCTCCACTCGACGAGGTTAGAGACT
GTTTACGTTTCACAAGTGTGGGCCATGCATATTTGACGCCCCCAAGGACCAGGATTTGGTTAAA
TTTCACTGCCACGCCACAAAATGGAGTCCCTCTTGATGAACACAGAGACCCCCTTAACCAGTGT
TGTGGTCCTTCACCGTAAGTCGAGCCTGCTAAAGATCAATTGCTACAGCCAGCAGAGTGCAGGC
TCAGAGCAATAACCAAGAGTGACCGGACCAGTGGTTCTAATCGCCAACCACAAGGCCAAGACAG
TGGTAGACAGAAGACTGTAGCATCACACCAGGTCCCTCACGATTGTGTTTAAGAGAGCAAGCGA
CCCCAGCCAGGGGTTAGAAGTGTTCCGGTATTCTGTCCATTCTTGTTTTGCCAAATACCACCCC
CAAGTTTGATTTTCATACATGAATAAGCAAAAAATAGGAAGAAGAGAAAAACTTCTCTTCTCTT
CTCAGAAGGCCTTGCTTTGGGGTCTTGCTTAGAGGAGCTCAACATACCTGCATGTCAGAGGTTT
TCTGTTCACGGGATTTTTGGGTTTTTTGTTTTTGTTTTTGTTTTCTTATGACTGTATTTTCATT
TGAATTGCCTCCTTTTGCTAGTGTAAAATTATGATTAAATAATGATAATAATAATAGTAATAAT
AATAGTCAGCTGTTTCCAGATTAGTAAATTATGTATAATTTATTTTATTTCTCCCTATTTTATT
CTGCTTTGGATTTGGAAGCTGTTAGGTATTTAAAACTAATTTCTATTTCTAGCTCACACACACA
CACACACACACACACACACACACACACAGGACTACATGTGTGTATAGACACACCTAGACACATA
TGTCTGTATGTGTGTATACACACAGACACTTGCTTCTCTATCCATAACTCCTTCTGTGTTAACA
GTTTTGACCCCCATAGCATCAGTTCTGGTATTTAATATGAAGGGGTGAATTAGTAGGAATGTCG
TGTTCAATCTTCATTAACTTATGCTCTTTCCTCTCATTTTAGTTATTTAATTACCAATTATCTA
GAGCCAATTTTTTTGTTTTTGTTTTGTTTCAAAGCACTCTGAATAAGAAGAAAAAAATAGACAC
TTGTTTTTATACCGTTATAACGTACAATGTGAAAACAGAGTTATTAAAAAAATAATATGTTTCT
CTGTGTCTTAACCAACTTCTCCTGACTGATGTGGGTTCTCCACTCTCACGTGCTGGGTCCCTGT
CTCACAGCACAGTTGAGACAACTTCGGTTTTCATTTCCTGACCGTGGGCGGCAAGAATACTTTG
TTTCAGCTCCAGGTAGATTGCTGCTGACAGCATCCAAGGCCAAAACCCAACCCAACACAGCAGT
GAATCAGAGAGAACTCCCTCTTTGGTTTGCTTTTGGTTTATCTGAAGGGAGAATGAAACTCTTC
ACGGTGACCTGTAGCTGCCCAAACCCTCCAGTTTCTTTGAGTTTATGTCCGTAACTGAACTGTG
CCCAGACAAAACCACAAGGCAAGCCCATCACAGCATGCCTTTCTTTGTCCCGACATTTTCCTCA
GTGGATGTTGGCTTTGTTTTATCCAAGAGTTTGCCCTAGGGGACAACACAAAAGCAAAAGTGAT
TCTGCTCGAGGCTAAAGCCCACGTAAGTCACTTGGGGGGGAGGAGCTTTGAATGGTGACTCTAA
CAACATAATGCCTTGGGTCCATTGCTTGGGCGATGATTTCTGTAAAGGATCTTATAGCTTTACA
TTCTTTCTATGTCACACGAAAGCCAAGTAAGACATGGTAGAGGGAATGAGATAAAGTGGAAAGG
CAAACCTCAGCCAATAGCCCCTCCCCCTTCTTCCCTCTCCCTGGCTTGTGGCTGTAAGCCACGC
CCATCTGTCTTTCTGCCCCCACCCCATCTTCCCTTCCACACACATTTATACCAAAACTGAAGAG
TAACATTGCCAATTTCTTCTTTTTCTATTTGTTATCGGGACCCCTGAAACTAGTCACGTTTGAT
AGAAATCTAAGAAAAACATTCAGTGGAGAAGGAGGTTGGAGTTCTTTGTAAGTCAATAATAATT
TGGCTAGCTGTTACAAACAGAAAGTCGCACACACTTCTGTGTAATTTTTACTCAAATCAGTCAA
GTGGACTCTGAAAGTTCATTCGTTTCTAGCTAAGATTCGCCTTTTTGTAAAACCCTTCCCACTG
GACATCAGTATCATGGTTGGAACCAAATCTCCCCATAGGGGATGAAGATCAGAGAGTAAAGTTT
CCTACAATGAGACCGCTCAGTATGTTTAACTTCTAAAGGACAGTTTACCTTAGTCTGCTTGAGG
GAAATTATGTTCACCATTTTGTGGTGTGTTTTCAGATATTTCCGTAACGCGGGGGTCGGACGGT
GTCCTCGGAAGAATTTTCCTCTGTCTCACTTAAAAACTTAAGGGATAGCTATACAGTCTTTACT
CTGAAGGGTAAATTATTGAATTGTGATAACTGTATATTTACAGACAGGTTTATAAAAATATTTG
TCTATCAAATTAATAGTGAAATAAAACTTTTATGAGGTTCGCAAGGAAGAAATACGAAAGCTAC
TTAAAGTGGCGGATCTATCTCATTGCCTCTTAGGGCAAAGACATTTCTTTAAGCCAGGTTGACA
CAGTATTTAATTTTGCAGTCCCACAGGTTGAAGGTAACATGCTGAGTTTCCTACTGACGGTCCC
TGTCCTCCCCCCAGTGTCTGTCACTGGTCCACTAAAGGCAGTATTTATTCAGGCTCCCCTGGCT
CTAAAGCACTTAGTCCTCCTGACAGTTTGGATTTCACAAGTGAAAAAGTTTTGTTTTGTTTTAT
TTTGTTATTTTTTAAATGATTTAAATAAAAAAAAATAGAAGAGACAATCAATGCCTGGAGCTTA
AAACAAAGTCTGTGCAAACTACCATCTCACTTGAAATTTAATAAAATAAGAAATCGTGTAAATA
TAACATAGAGTTATAGATTTCTATTTTGTTCATAACATAGTGTAATATAAGTTGTATATTTTCA
TGTTTTTTGGGTTTTATGTTATCATTCATGCCACAATGAGAATAAAGCAGGAGTTTGTGTACTC
TTGGGAAAAAGAAAAAGACAAAAAAATAAGATGTGGGTTTCCGCCAACCTGGTTTTTTTTTGTT
TTGTTTTCGTTTTTTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTGCTTTTCTGTTCTTGTTTT
CATTTTGTCTTGTTTGTTTGGCCTTCCCCCTTTCAGTATTACTGCCGTGCAAGGCATCAATAAA
ACAGCAAATGTGTTCTTTATCTATTA

hide sequence

RefSeq Acc Id:

XM_008763349 ⟹ XP_008761571

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 178,890,515 (-)	NCBI
mRatBN7.2	4	176,781,375 - 177,159,641 (-)	NCBI
Rnor_6.0	4	178,062,267 - 178,441,669 (-)	NCBI

Sequence:

show sequence

GAGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGAGAGGAGGGGAAGGGGGAGAGGGAGAAAGG
GAGAGGGGGAGAGAGAGAGTGAGAAGAGACAGAAAGAGAATCCATTGGTTTAGAAGGTTTGGAC
TGACTTGACAGGTTCAGTTGGAGCCGATCATAGGTGGCCGCTGTGACAAAGGGAAATTGTGCTT
TTCCAGCATGCTTACTGACCCTGATTTACCTCAGGAGTTTGAAAGGATGTCTTCCAAGCGACCA
GCCTCTCCGTATGGGGAGACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAG
AGGAGGAGAGTGAGAGGCTCCCAGCCTTTCACCTTCCCTTACATGAAGTCGATGGCAATAAAGT
TATGTCTTCATTAGCTCCGTACAACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGA
CAGAGTGGGGAGTCGGTGTCGAGCGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAG
CGGATGTGGTCGACACCTTGAAGCAGAGGAAGATGGAGGAGCTGATCAAGAACGAGCCGGAAGA
CACTCCCAGCATTGAAAAGCTCCTCTCCAAGGACTGGAAAGACAAGCTCCTGGCAATGGGATCA
GGGAACTTTGGAGAAATCAAAGGGACTCCTGAGAGCCTCGCTGAGAAGGAGCGGCAGCTCATGG
GTATGATCAATCAGCTGACCAGTCTACGGGAGCAACTCCTGGCTGCCCATGATGAGCAGAAGAA
GTTGGCTGCGTCTCAGATAGAGAAACAGCGCCAGCAGATGGAGTTGGCCAAGCAGCAGCAGGAG
CAGATCGCAAGGCAACAGCAGCAGCTTCTGCAGCAACAACACAAAATCAACTTGCTCCAGCAAC
AGATCCAGCAGGTTCAAGGTCAGCTGCCGCCATTGATGATTCCCGTGTTCCCTCCCGACCAGCG
GACCCTCGCAGCAGCTGCCCAACAAGGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGG
TGCAGTGACCCTTACCCCGTTCAGCTGATCCCAACCACCATGGCAGCTGCCGCTGCAGCGACAC
CAGGCTTAGGCCCACTCCAGCTGCAGCAGTTCTATGCTGCCCAGCTAGCTGCAATGCAGGTTTC
TCCAGGAGGGAAGCTCCTAGGCCTACCCCAAGGCAACCTTGGTGCTGCCGTGTCTCCTACCAGC
ATTCACACAGACAAGAGCACAAACAGCCCACCACCCAAAAGCAAGGATGAAGTGGCCCAGCCAC
TGAACCTATCAGCTAAGCCCAAGACCTCTGACGGCAAATCACCTGCGTCACCCACCTCTCCTCA
CATGCCAGCTCTGAGAATTAACAGTGGAGCGGGTCCCCTCAAAGCCTCTGTCCCAGCAGCGTTA
GCTAGTCCTTCAGCGAGAGTTAGCACAATAGGTTATTTAAATGACCACGATGCTGTCACCAAGG
CAATCCAAGAAGCCCGCCAGATGAAGGAACAGCTGAGGCGGGAGCAGCAAGCGCTGGATGGGAA
GGTGGCCGTAGTGAACAGCATAGGTATCAGCAACTGCCGGACAGAAAAGGAAAAAACAACACTG
GAGAGCCTGACTCAGCAGTTGGCAGTTAAACAGAATGAAGAAGGGAAATTTAGCCATGGAATGA
TGGATTTCAACATGAGTGGGGATTCTGACGGAAGCGCTGGAGTCTCAGAGTCGAGAATTTACAG
GGAATCCAGGGGACGCGGTAGCAATGAGCCGCACATAAAGCGTCCAATGAATGCCTTCATGGTG
TGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATCA
GCAAGATACTGGGATCTCGTTGGAAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGA
GCAGGCCCGGCTCAGCAAACAGCACCTGGAGAAGTACCCAGACTACAAGTACAAACCCAGGCCG
AAGCGCACTTGTCTGGTAGATGGGAAGAAACTGCGCATTGGAGAGTACAAGGCCATCATGCGGA
ATCGGAGGCAGGAAATGCGACAGTACTTCAACGTTGGGCAACAAGCACAGATCCCCATCGCTAC
GGCCGGTGTCGTGTACCCCGGTGCCATCGCCATGGCAGGAATGCCGTCCCCTCACCTGCCCTCA
GAGCACTCGAGCGTGTCCAGCAGCCCAGAGCCCGGGATGCCCGTGATTCAGAGCACTTACGGCG
TGAAGGGAGAGGAGCCTCACATCAAGGAAGAAATCCAGGCTGAGGACATCAACGGAGAGATTTA
TGAGGAGTACGAGGAGGAGGAGGAGGACCCCGACGTCGACTATGGGAGTGACAGCGAAAACCAT
ATTGCAGGACAAGCCAACTGATCAGGGCCAACGGACCGCGGTGAGCTGAGGACTTGAAGAAGCC
CTAGCTGGTTCATCCTTAGTAGTGGCCAAGCACATTAACTCTCTCATACACTGACTGTTATTTT
AACTGTTAGTCTTAAATAGTTGGGATATCAGCTGACAAATAGACCTCAGCCTCAAAAGGCTCGG
AAAGGAAAGAAAGAAAAATAAAAAAAAAAAAACAAACAAACAAAAACTACAAGCAAACGTCATT
GACAACAAGAGATCGAAATAAGCTATGGGTAACCAATGCCAGTAAATCAGCTGCTACACCCCAG
CACTGAAGTCTCACCCATCAACTTTTTTTTTTTTAAATAAACTTTATGGCTGTTTGTTCTATAT
TAGAAAATCCTCACTCAGGTACACAGTGCCAACAAGTGGCTTGTGAATGTGTTATGTTGTTCTG
TGCGACAATTTTTAAAAAGAAATAAGTTTTGTTCTTCTGTTCTGTTCTGGGGGGGTGGTTCTGG
GTTTTCCTTTTTCTTTTTTTGTTAATTTTTCTTTGCTTTTTGATTGTTATCTTGCACCCGACAG
ACCGGGGGAAGACTGCCGTCAGTCCCTGCCCCCTGCCCCGCCCTCTCGATCGGTCTGCTTTCAG
GATGGAGGCATGTGTGAGGGTGGGGCCGGGGGTGGGGAGGGAGAGGAAAACAAGAGCCTACGTC
TGCCTTCATTGCTTCTACCCGACAGAGTCAGCAACTGTTTTCCTTAGAGACCCCCTAACCCTTG
CACACGACACTACGTCTTTGAGCAAGTGCCAAATTTGTACCGAAGCGATCACCAACTTCATTTG
CTTATCCTTCCTTTCTCCTTGTTCTTCTTCCGTTAGGACAGTGTTAAACCTTAGACAGTCCCTG
GAAAGAGCTGACACACCAGCAACTGATGAGACTGGTTTTTGTTCTATTCTGGTTTTTTTTGTTT
GTTTGTTTGTTTTTGTTTTCTTTTTTGTTTTATGGAAACTGTAGGTGCCGTTCTCAGGTGAAAA
GAGAGAGAGAGAGACAGAAATTTAGAGAAAAAAAATATTTTCTGATCTTGGATTTCTGTGTGCG
TGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTATG
GTACATTAGATGCATTCCTATTAGGGAATAATGTCCGGCCATTGTGAGCAACACCCCCCATGTG
GGACAGCATTCCACCCCTCCTGAGCAAGCGGGCTTAGAAGCAACCTTAACCTTGATTTTGCACT
TCCAGGGGCAATGGAACTAAGTGTAAAGTTCGGAAACTATATTTTTCAGTTTCTAGTATGCTCA
TTATAGGGTGGACCTGGTGACCCTGTGTCACGGGCATGTACATGACAGACATGGAAACTACCAG
CCAAATGCTTCTGGAGGCTCCTTCTCCCTGGACAATTTGCTTTTTCTGACGTTTGCTTCTTAGT
GATCCGTGTGTGTATGCCTGTGTGCGTGTGTTTGTTTTTCCTGTCAAAACTTTTGAGCAAAGCA
ATCAACGGTCTTGACTGAACCCGTTTGCCATTTTTCAGAAATAACGGAATTAGCTTATGCCTCC
ATTGTTCCGACCTTTCCTGACGGGGAAACAGAACTGATGGTTTTGTAAGATTTTTTTCTTTTTA
TCTCTCCACTCGACGAGGTTAGAGACTGTTTACGTTTCACAAGTGTGGGCCATGCATATTTGAC
GCCCCCAAGGACCAGGATTTGGTTAAATTTCACTGCCACGCCACAAAATGGAGTCCCTCTTGAT
GAACACAGAGACCCCCTTAACCAGTGTTGTGGTCCTTCACCGTAAGTCGAGCCTGCTAAAGATC
AATTGCTACAGCCAGCAGAGTGCAGGCTCAGAGCAATAACCAAGAGTGACCGGACCAGTGGTTC
TAATCGCCAACCACAAGGCCAAGACAGTGGTAGACAGAAGACTGTAGCATCACACCAGGTCCCT
CACGATTGTGTTTAAGAGAGCAAGCGACCCCAGCCAGGGGTTAGAAGTGTTCCGGTATTCTGTC
CATTCTTGTTTTGCCAAATACCACCCCCAAGTTTGATTTTCATACATGAATAAGCAAAAAATAG
GAAGAAGAGAAAAACTTCTCTTCTCTTCTCAGAAGGCCTTGCTTTGGGGTCTTGCTTAGAGGAG
CTCAACATACCTGCATGTCAGAGGTTTTCTGTTCACGGGATTTTTGGGTTTTTTGTTTTTGTTT
TTGTTTTCTTATGACTGTATTTTCATTTGAATTGCCTCCTTTTGCTAGTGTAAAATTATGATTA
AATAATGATAATAATAATAGTAATAATAATAGTCAGCTGTTTCCAGATTAGTAAATTATGTATA
ATTTATTTTATTTCTCCCTATTTTATTCTGCTTTGGATTTGGAAGCTGTTAGGTATTTAAAACT
AATTTCTATTTCTAGCTCACACACACACACACACACACACACACACACACACACAGGACTACAT
GTGTGTATAGACACACCTAGACACATATGTCTGTATGTGTGTATACACACAGACACTTGCTTCT
CTATCCATAACTCCTTCTGTGTTAACAGTTTTGACCCCCATAGCATCAGTTCTGGTATTTAATA
TGAAGGGGTGAATTAGTAGGAATGTCGTGTTCAATCTTCATTAACTTATGCTCTTTCCTCTCAT
TTTAGTTATTTAATTACCAATTATCTAGAGCCAATTTTTTTGTTTTTGTTTTGTTTCAAAGCAC
TCTGAATAAGAAGAAAAAAATAGACACTTGTTTTTATACCGTTATAACGTACAATGTGAAAACA
GAGTTATTAAAAAAATAATATGTTTCTCTGTGTCTTAACCAACTTCTCCTGACTGATGTGGGTT
CTCCACTCTCACGTGCTGGGTCCCTGTCTCACAGCACAGTTGAGACAACTTCGGTTTTCATTTC
CTGACCGTGGGCGGCAAGAATACTTTGTTTCAGCTCCAGGTAGATTGCTGCTGACAGCATCCAA
GGCCAAAACCCAACCCAACACAGCAGTGAATCAGAGAGAACTCCCTCTTTGGTTTGCTTTTGGT
TTATCTGAAGGGAGAATGAAACTCTTCACGGTGACCTGTAGCTGCCCAAACCCTCCAGTTTCTT
TGAGTTTATGTCCGTAACTGAACTGTGCCCAGACAAAACCACAAGGCAAGCCCATCACAGCATG
CCTTTCTTTGTCCCGACATTTTCCTCAGTGGATGTTGGCTTTGTTTTATCCAAGAGTTTGCCCT
AGGGGACAACACAAAAGCAAAAGTGATTCTGCTCGAGGCTAAAGCCCACGTAAGTCACTTGGGG
GGGAGGAGCTTTGAATGGTGACTCTAACAACATAATGCCTTGGGTCCATTGCTTGGGCGATGAT
TTCTGTAAAGGATCTTATAGCTTTACATTCTTTCTATGTCACACGAAAGCCAAGTAAGACATGG
TAGAGGGAATGAGATAAAGTGGAAAGGCAAACCTCAGCCAATAGCCCCTCCCCCTTCTTCCCTC
TCCCTGGCTTGTGGCTGTAAGCCACGCCCATCTGTCTTTCTGCCCCCACCCCATCTTCCCTTCC
ACACACATTTATACCAAAACTGAAGAGTAACATTGCCAATTTCTTCTTTTTCTATTTGTTATCG
GGACCCCTGAAACTAGTCACGTTTGATAGAAATCTAAGAAAAACATTCAGTGGAGAAGGAGGTT
GGAGTTCTTTGTAAGTCAATAATAATTTGGCTAGCTGTTACAAACAGAAAGTCGCACACACTTC
TGTGTAATTTTTACTCAAATCAGTCAAGTGGACTCTGAAAGTTCATTCGTTTCTAGCTAAGATT
CGCCTTTTTGTAAAACCCTTCCCACTGGACATCAGTATCATGGTTGGAACCAAATCTCCCCATA
GGGGATGAAGATCAGAGAGTAAAGTTTCCTACAATGAGACCGCTCAGTATGTTTAACTTCTAAA
GGACAGTTTACCTTAGTCTGCTTGAGGGAAATTATGTTCACCATTTTGTGGTGTGTTTTCAGAT
ATTTCCGTAACGCGGGGGTCGGACGGTGTCCTCGGAAGAATTTTCCTCTGTCTCACTTAAAAAC
TTAAGGGATAGCTATACAGTCTTTACTCTGAAGGGTAAATTATTGAATTGTGATAACTGTATAT
TTACAGACAGGTTTATAAAAATATTTGTCTATCAAATTAATAGTGAAATAAAACTTTTATGAGG
TTCGCAAGGAAGAAATACGAAAGCTACTTAAAGTGGCGGATCTATCTCATTGCCTCTTAGGGCA
AAGACATTTCTTTAAGCCAGGTTGACACAGTATTTAATTTTGCAGTCCCACAGGTTGAAGGTAA
CATGCTGAGTTTCCTACTGACGGTCCCTGTCCTCCCCCCAGTGTCTGTCACTGGTCCACTAAAG
GCAGTATTTATTCAGGCTCCCCTGGCTCTAAAGCACTTAGTCCTCCTGACAGTTTGGATTTCAC
AAGTGAAAAAGTTTTGTTTTGTTTTATTTTGTTATTTTTTAAATGATTTAAATAAAAAAAAATA
GAAGAGACAATCAATGCCTGGAGCTTAAAACAAAGTCTGTGCAAACTACCATCTCACTTGAAAT
TTAATAAAATAAGAAATCGTGTAAATATAACATAGAGTTATAGATTTCTATTTTGTTCATAACA
TAGTGTAATATAAGTTGTATATTTTCATGTTTTTTGGGTTTTATGTTATCATTCATGCCACAAT
GAGAATAAAGCAGGAGTTTGTGTACTCTTGGGAAAAAGAAAAAGACAAAAAAATAAGATGTGGG
TTTCCGCCAACCTGGTTTTTTTTTGTTTTGTTTTCGTTTTTTTTTTTTTTTTGTTTTGTTTTGT
TTTGTTTTGCTTTTCTGTTCTTGTTTTCATTTTGTCTTGTTTGTTTGGCCTTCCCCCTTTCAGT
ATTACTGCCGTGCAAGGCATCAATAAAACAGCAAATGTGTTCTTTATCTATTA

hide sequence

RefSeq Acc Id:

XM_017592402 ⟹ XP_017447891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 179,467,686 (-)	NCBI
mRatBN7.2	4	176,781,375 - 177,736,833 (-)	NCBI
Rnor_6.0	4	178,062,267 - 179,031,991 (-)	NCBI

Sequence:

show sequence

GCACACCCCACACAAACACACCCCGATACAGACACACACACAGAGTGCAAAAGGCGAGCCGCCC
CATCCCGTCTCCAGGGTCCTCCGGGGCCCCCGCCCGCTGCTGCGCATCCCGCGTCAGAGGAGCG
ATTAACCAGACCCGGTAAGACACTCCAAGTCGTTGTGGTGCCAGGATCTACTTCTGAAGGACCC
TCAGAAGCCTCGGACAAGCTTCCCACATGTGGCAGGTGCTGTACTGGATGCTGTTGACCCAAAG
ATGATGATGAGGATGTTCCTGCCCACAAGGAGTTAGCAAGCCGTGTTACCAGAACAGAGAGCGC
CGAGGATATCCGGAAGTAGGAGAGACTGACCCGGAGGCTCCCCAGGATGTCTTCCAAGCGACCA
GCCTCTCCGTATGGGGAGACAGATGGAGAGGTAGCCATGGTGACAAGCAGACAGAAAGTGGAAG
AGGAGGAGAGTGAGAGGCTCCCAGCCTTTCACCTTCCCTTACATGTGAGTTTTCCCAACAAGCC
TCACTCTGAGGAATTTCAGCCAGTTTCTCTGCTGACGCAAGAGGCTTGTGGTCCTAGGACCCCC
GCTGCTCAGCACAGTACAATGGAAGTCGATGGCAATAAAGTTATGTCTTCATTAGCTCCGTACA
ACTCATCTACCTCACCTCAGAAGGCGGAAGAAGGTGGGCGACAGAGTGGGGAGTCGGTGTCGAG
CGCAGCCCTGGGGACTCCCGAGCGGCGCAAGGGCAGCTTAGCGGATGTGGTCGACACCTTGAAG
CAGAGGAAGATGGAGGAGCTGATCAAGAACGAGCCGGAAGACACTCCCAGCATTGAAAAGCTCC
TCTCCAAGGACTGGAAAGACAAGCTCCTGGCAATGGGATCAGGGAACTTTGGAGAAATCAAAGG
GACTCCTGAGAGCCTCGCTGAGAAGGAGCGGCAGCTCATGGGTATGATCAATCAGCTGACCAGT
CTACGGGAGCAACTCCTGGCTGCCCATGATGAGCAGAAGAAGTTGGCTGCGTCTCAGATAGAGA
AACAGCGCCAGCAGATGGAGTTGGCCAAGCAGCAGCAGGAGCAGATCGCAAGGCAACAGCAGCA
GCTTCTGCAGCAACAACACAAAATCAACTTGCTCCAGCAACAGATCCAGCAGGTTCAAGGTCAG
CTGCCGCCATTGATGATTCCCGTGTTCCCTCCCGACCAGCGGACCCTCGCAGCAGCTGCCCAAC
AAGGATTCCTCCTTCCTCCTGGTTTCAGCTACAAGGCTGGGTGCAGTGACCCTTACCCCGTTCA
GCTGATCCCAACCACCATGGCAGCTGCCGCTGCAGCGACACCAGGCTTAGGCCCACTCCAGCTG
CAGCAGTTCTATGCTGCCCAGCTAGCTGCAATGCAGGTTTCTCCAGGAGGGAAGCTCCTAGGCC
TACCCCAAGGCAACCTTGGTGCTGCCGTGTCTCCTACCAGCATTCACACAGACAAGAGCACAAA
CAGCCCACCACCCAAAAGCAAGGATGAAGTGGCCCAGCCACTGAACCTATCAGCTAAGCCCAAG
ACCTCTGACGGCAAATCACCTGCGTCACCCACCTCTCCTCACATGCCAGCTCTGAGAATTAACA
GTGGAGCGGGTCCCCTCAAAGCCTCTGTCCCAGCAGCGTTAGCTAGTCCTTCAGCGAGAGTTAG
CACAATAGGTTATTTAAATGACCACGATGCTGTCACCAAGGCAATCCAAGAAGCCCGCCAGATG
AAGGAACAGCTGAGGCGGGAGCAGCAAGCGCTGGATGGGAAGGTGGCCGTAGTGAACAGCATAG
GTATCAGCAACTGCCGGACAGAAAAGGAAAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGC
AGTTAAACAGAATGAAGAAGGGAAATTTAGCCATGGAATGATGGATTTCAACATGAGTGGGGAT
TCTGACGGAAGCGCTGGAGTCTCAGAGTCGAGAATTTACAGGGAATCCAGGGGACGCGGTAGCA
ATGAGCCGCACATAAAGCGTCCAATGAATGCCTTCATGGTGTGGGCGAAAGATGAACGGAGGAA
AATCCTTCAGGCCTTTCCCGACATGCACAATTCCAACATCAGCAAGATACTGGGATCTCGTTGG
AAAGCTATGACCAACCTAGAGAAACAGCCATACTATGAGGAGCAGGCCCGGCTCAGCAAACAGC
ACCTGGAGAAGTACCCAGACTACAAGTACAAACCCAGGCCGAAGCGCACTTGTCTGGTAGATGG
GAAGAAACTGCGCATTGGAGAGTACAAGGCCATCATGCGGAATCGGAGGCAGGAAATGCGACAG
TACTTCAACGTTGGGCAACAAGCACAGATCCCCATCGCTACGGCCGGTGTCGTGTACCCCGGTG
CCATCGCCATGGCAGGAATGCCGTCCCCTCACCTGCCCTCAGAGCACTCGAGCGTGTCCAGCAG
CCCAGAGCCCGGGATGCCCGTGATTCAGAGCACTTACGGCGTGAAGGGAGAGGAGCCTCACATC
AAGGAAGAAATCCAGGCTGAGGACATCAACGGAGAGATTTATGAGGAGTACGAGGAGGAGGAGG
AGGACCCCGACGTCGACTATGGGAGTGACAGCGAAAACCATATTGCAGGACAAGCCAACTGATC
AGGGCCAACGGACCGCGGTGAGCTGAGGACTTGAAGAAGCCCTAGCTGGTTCATCCTTAGTAGT
GGCCAAGCACATTAACTCTCTCATACACTGACTGTTATTTTAACTGTTAGTCTTAAATAGTTGG
GATATCAGCTGACAAATAGACCTCAGCCTCAAAAGGCTCGGAAAGGAAAGAAAGAAAAATAAAA
AAAAAAAAACAAACAAACAAAAACTACAAGCAAACGTCATTGACAACAAGAGATCGAAATAAGC
TATGGGTAACCAATGCCAGTAAATCAGCTGCTACACCCCAGCACTGAAGTCTCACCCATCAACT
TTTTTTTTTTTAAATAAACTTTATGGCTGTTTGTTCTATATTAGAAAATCCTCACTCAGGTACA
CAGTGCCAACAAGTGGCTTGTGAATGTGTTATGTTGTTCTGTGCGACAATTTTTAAAAAGAAAT
AAGTTTTGTTCTTCTGTTCTGTTCTGGGGGGGTGGTTCTGGGTTTTCCTTTTTCTTTTTTTGTT
AATTTTTCTTTGCTTTTTGATTGTTATCTTGCACCCGACAGACCGGGGGAAGACTGCCGTCAGT
CCCTGCCCCCTGCCCCGCCCTCTCGATCGGTCTGCTTTCAGGATGGAGGCATGTGTGAGGGTGG
GGCCGGGGGTGGGGAGGGAGAGGAAAACAAGAGCCTACGTCTGCCTTCATTGCTTCTACCCGAC
AGAGTCAGCAACTGTTTTCCTTAGAGACCCCCTAACCCTTGCACACGACACTACGTCTTTGAGC
AAGTGCCAAATTTGTACCGAAGCGATCACCAACTTCATTTGCTTATCCTTCCTTTCTCCTTGTT
CTTCTTCCGTTAGGACAGTGTTAAACCTTAGACAGTCCCTGGAAAGAGCTGACACACCAGCAAC
TGATGAGACTGGTTTTTGTTCTATTCTGGTTTTTTTTGTTTGTTTGTTTGTTTTTGTTTTCTTT
TTTGTTTTATGGAAACTGTAGGTGCCGTTCTCAGGTGAAAAGAGAGAGAGAGAGACAGAAATTT
AGAGAAAAAAAATATTTTCTGATCTTGGATTTCTGTGTGCGTGTGTGTGAGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTATGGTACATTAGATGCATTCCTATTA
GGGAATAATGTCCGGCCATTGTGAGCAACACCCCCCATGTGGGACAGCATTCCACCCCTCCTGA
GCAAGCGGGCTTAGAAGCAACCTTAACCTTGATTTTGCACTTCCAGGGGCAATGGAACTAAGTG
TAAAGTTCGGAAACTATATTTTTCAGTTTCTAGTATGCTCATTATAGGGTGGACCTGGTGACCC
TGTGTCACGGGCATGTACATGACAGACATGGAAACTACCAGCCAAATGCTTCTGGAGGCTCCTT
CTCCCTGGACAATTTGCTTTTTCTGACGTTTGCTTCTTAGTGATCCGTGTGTGTATGCCTGTGT
GCGTGTGTTTGTTTTTCCTGTCAAAACTTTTGAGCAAAGCAATCAACGGTCTTGACTGAACCCG
TTTGCCATTTTTCAGAAATAACGGAATTAGCTTATGCCTCCATTGTTCCGACCTTTCCTGACGG
GGAAACAGAACTGATGGTTTTGTAAGATTTTTTTCTTTTTATCTCTCCACTCGACGAGGTTAGA
GACTGTTTACGTTTCACAAGTGTGGGCCATGCATATTTGACGCCCCCAAGGACCAGGATTTGGT
TAAATTTCACTGCCACGCCACAAAATGGAGTCCCTCTTGATGAACACAGAGACCCCCTTAACCA
GTGTTGTGGTCCTTCACCGTAAGTCGAGCCTGCTAAAGATCAATTGCTACAGCCAGCAGAGTGC
AGGCTCAGAGCAATAACCAAGAGTGACCGGACCAGTGGTTCTAATCGCCAACCACAAGGCCAAG
ACAGTGGTAGACAGAAGACTGTAGCATCACACCAGGTCCCTCACGATTGTGTTTAAGAGAGCAA
GCGACCCCAGCCAGGGGTTAGAAGTGTTCCGGTATTCTGTCCATTCTTGTTTTGCCAAATACCA
CCCCCAAGTTTGATTTTCATACATGAATAAGCAAAAAATAGGAAGAAGAGAAAAACTTCTCTTC
TCTTCTCAGAAGGCCTTGCTTTGGGGTCTTGCTTAGAGGAGCTCAACATACCTGCATGTCAGAG
GTTTTCTGTTCACGGGATTTTTGGGTTTTTTGTTTTTGTTTTTGTTTTCTTATGACTGTATTTT
CATTTGAATTGCCTCCTTTTGCTAGTGTAAAATTATGATTAAATAATGATAATAATAATAGTAA
TAATAATAGTCAGCTGTTTCCAGATTAGTAAATTATGTATAATTTATTTTATTTCTCCCTATTT
TATTCTGCTTTGGATTTGGAAGCTGTTAGGTATTTAAAACTAATTTCTATTTCTAGCTCACACA
CACACACACACACACACACACACACACACACAGGACTACATGTGTGTATAGACACACCTAGACA
CATATGTCTGTATGTGTGTATACACACAGACACTTGCTTCTCTATCCATAACTCCTTCTGTGTT
AACAGTTTTGACCCCCATAGCATCAGTTCTGGTATTTAATATGAAGGGGTGAATTAGTAGGAAT
GTCGTGTTCAATCTTCATTAACTTATGCTCTTTCCTCTCATTTTAGTTATTTAATTACCAATTA
TCTAGAGCCAATTTTTTTGTTTTTGTTTTGTTTCAAAGCACTCTGAATAAGAAGAAAAAAATAG
ACACTTGTTTTTATACCGTTATAACGTACAATGTGAAAACAGAGTTATTAAAAAAATAATATGT
TTCTCTGTGTCTTAACCAACTTCTCCTGACTGATGTGGGTTCTCCACTCTCACGTGCTGGGTCC
CTGTCTCACAGCACAGTTGAGACAACTTCGGTTTTCATTTCCTGACCGTGGGCGGCAAGAATAC
TTTGTTTCAGCTCCAGGTAGATTGCTGCTGACAGCATCCAAGGCCAAAACCCAACCCAACACAG
CAGTGAATCAGAGAGAACTCCCTCTTTGGTTTGCTTTTGGTTTATCTGAAGGGAGAATGAAACT
CTTCACGGTGACCTGTAGCTGCCCAAACCCTCCAGTTTCTTTGAGTTTATGTCCGTAACTGAAC
TGTGCCCAGACAAAACCACAAGGCAAGCCCATCACAGCATGCCTTTCTTTGTCCCGACATTTTC
CTCAGTGGATGTTGGCTTTGTTTTATCCAAGAGTTTGCCCTAGGGGACAACACAAAAGCAAAAG
TGATTCTGCTCGAGGCTAAAGCCCACGTAAGTCACTTGGGGGGGAGGAGCTTTGAATGGTGACT
CTAACAACATAATGCCTTGGGTCCATTGCTTGGGCGATGATTTCTGTAAAGGATCTTATAGCTT
TACATTCTTTCTATGTCACACGAAAGCCAAGTAAGACATGGTAGAGGGAATGAGATAAAGTGGA
AAGGCAAACCTCAGCCAATAGCCCCTCCCCCTTCTTCCCTCTCCCTGGCTTGTGGCTGTAAGCC
ACGCCCATCTGTCTTTCTGCCCCCACCCCATCTTCCCTTCCACACACATTTATACCAAAACTGA
AGAGTAACATTGCCAATTTCTTCTTTTTCTATTTGTTATCGGGACCCCTGAAACTAGTCACGTT
TGATAGAAATCTAAGAAAAACATTCAGTGGAGAAGGAGGTTGGAGTTCTTTGTAAGTCAATAAT
AATTTGGCTAGCTGTTACAAACAGAAAGTCGCACACACTTCTGTGTAATTTTTACTCAAATCAG
TCAAGTGGACTCTGAAAGTTCATTCGTTTCTAGCTAAGATTCGCCTTTTTGTAAAACCCTTCCC
ACTGGACATCAGTATCATGGTTGGAACCAAATCTCCCCATAGGGGATGAAGATCAGAGAGTAAA
GTTTCCTACAATGAGACCGCTCAGTATGTTTAACTTCTAAAGGACAGTTTACCTTAGTCTGCTT
GAGGGAAATTATGTTCACCATTTTGTGGTGTGTTTTCAGATATTTCCGTAACGCGGGGGTCGGA
CGGTGTCCTCGGAAGAATTTTCCTCTGTCTCACTTAAAAACTTAAGGGATAGCTATACAGTCTT
TACTCTGAAGGGTAAATTATTGAATTGTGATAACTGTATATTTACAGACAGGTTTATAAAAATA
TTTGTCTATCAAATTAATAGTGAAATAAAACTTTTATGAGGTTCGCAAGGAAGAAATACGAAAG
CTACTTAAAGTGGCGGATCTATCTCATTGCCTCTTAGGGCAAAGACATTTCTTTAAGCCAGGTT
GACACAGTATTTAATTTTGCAGTCCCACAGGTTGAAGGTAACATGCTGAGTTTCCTACTGACGG
TCCCTGTCCTCCCCCCAGTGTCTGTCACTGGTCCACTAAAGGCAGTATTTATTCAGGCTCCCCT
GGCTCTAAAGCACTTAGTCCTCCTGACAGTTTGGATTTCACAAGTGAAAAAGTTTTGTTTTGTT
TTATTTTGTTATTTTTTAAATGATTTAAATAAAAAAAAATAGAAGAGACAATCAATGCCTGGAG
CTTAAAACAAAGTCTGTGCAAACTACCATCTCACTTGAAATTTAATAAAATAAGAAATCGTGTA
AATATAACATAGAGTTATAGATTTCTATTTTGTTCATAACATAGTGTAATATAAGTTGTATATT
TTCATGTTTTTTGGGTTTTATGTTATCATTCATGCCACAATGAGAATAAAGCAGGAGTTTGTGT
ACTCTTGGGAAAAAGAAAAAGACAAAAAAATAAGATGTGGGTTTCCGCCAACCTGGTTTTTTTT
TGTTTTGTTTTCGTTTTTTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTGCTTTTCTGTTCTTG
TTTTCATTTTGTCTTGTTTGTTTGGCCTTCCCCCTTTCAGTATTACTGCCGTGCAAGGCATCAA
TAAAACAGCAAATGTGTTCTTTATCTATTA

hide sequence

RefSeq Acc Id:

XM_017592410 ⟹ XP_017447899

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 178,624,704 (-)	NCBI
mRatBN7.2	4	176,781,715 - 176,893,809 (-)	NCBI
Rnor_6.0	4	178,062,267 - 178,174,275 (-)	NCBI

Sequence:

show sequence

GGAGATTTTAGAGATGACACAGTTCTTAGGGAGTCTCTTTCTTCAGCCTCCATGATACTTCCTC
CTCTGCCTCCCTCACAGGTGACCCTTACCCCGTTCAGCTGATCCCAACCACCATGGCAGCTGCC
GCTGCAGCGACACCAGGCTTAGGCCCACTCCAGCTGCAGCAGTTCTATGCTGCCCAGCTAGCTG
CAATGCAGGTTTCTCCAGGAGGGAAGCTCCTAGGCCTACCCCAAGGCAACCTTGGTGCTGCCGT
GTCTCCTACCAGCATTCACACAGACAAGAGCACAAACAGCCCACCACCCAAAAGCAAGGATGAA
GTGGCCCAGCCACTGAACCTATCAGCTAAGCCCAAGACCTCTGACGGCAAATCACCTGCGTCAC
CCACCTCTCCTCACATGCCAGCTCTGAGAATTAACAGTGGAGCGGGTCCCCTCAAAGCCTCTGT
CCCAGCAGCGTTAGCTAGTCCTTCAGCGAGAGTTAGCACAATAGGTTATTTAAATGACCACGAT
GCTGTCACCAAGGCAATCCAAGAAGCCCGCCAGATGAAGGAACAGCTGAGGCGGGAGCAGCAAG
CGCTGGATGGGAAGGTGGCCGTAGTGAACAGCATAGGTATCAGCAACTGCCGGACAGAAAAGGA
AAAAACAACACTGGAGAGCCTGACTCAGCAGTTGGCAGTTAAACAGAATGAAGAAGGGAAATTT
AGCCATGGAATGATGGATTTCAACATGAGTGGGGATTCTGACGGAAGCGCTGGAGTCTCAGAGT
CGAGAATTTACAGGGAATCCAGGGGACGCGGTAGCAATGAGCCGCACATAAAGCGTCCAATGAA
TGCCTTCATGGTGTGGGCGAAAGATGAACGGAGGAAAATCCTTCAGGCCTTTCCCGACATGCAC
AATTCCAACATCAGCAAGATACTGGGATCTCGTTGGAAAGCTATGACCAACCTAGAGAAACAGC
CATACTATGAGGAGCAGGCCCGGCTCAGCAAACAGCACCTGGAGAAGTACCCAGACTACAAGTA
CAAACCCAGGCCGAAGCGCACTTGTCTGGTAGATGGGAAGAAACTGCGCATTGGAGAGTACAAG
GCCATCATGCGGAATCGGAGGCAGGAAATGCGACAGTACTTCAACGTTGGGCAACAAGCACAGA
TCCCCATCGCTACGGCCGGTGTCGTGTACCCCGGTGCCATCGCCATGGCAGGAATGCCGTCCCC
TCACCTGCCCTCAGAGCACTCGAGCGTGTCCAGCAGCCCAGAGCCCGGGATGCCCGTGATTCAG
AGCACTTACGGCGTGAAGGGAGAGGAGCCTCACATCAAGGAAGAAATCCAGGCTGAGGACATCA
ACGGAGAGATTTATGAGGAGTACGAGGAGGAGGAGGAGGACCCCGACGTCGACTATGGGAGTGA
CAGCGAAAACCATATTGCAGGACAAGCCAACTGATCAGGGCCAACGGACCGCGGTGAGCTGAGG
ACTTGAAGAAGCCCTAGCTGGTTCATCCTTAGTAGTGGCCAAGCACATTAACTCTCTCATACAC
TGACTGTTATTTTAACTGTTAGTCTTAAATAGTTGGGATATCAGCTGACAAATAGACCTCAGCC
TCAAAAGGCTCGGAAAGGAAAGAAAGAAAAATAAAAAAAAAAAAACAAACAAACAAAAACTACA
AGCAAACGTCATTGACAACAAGAGATCGAAATAAGCTATGGGTAACCAATGCCAGTAAATCAGC
TGCTACACCCCAGCACTGAAGTCTCACCCATCAACTTTTTTTTTTTTAAATAAACTTTATGGCT
GTTTGTTCTATATTAGAAAATCCTCACTCAGGTACACAGTGCCAACAAGTGGCTTGTGAATGTG
TTATGTTGTTCTGTGCGACAATTTTTAAAAAGAAATAAGTTTTGTTCTTCTGTTCTGTTCTGGG
GGGGTGGTTCTGGGTTTTCCTTTTTCTTTTTTTGTTAATTTTTCTTTGCTTTTTGATTGTTATC
TTGCACCCGACAGACCGGGGGAAGACTGCCGTCAGTCCCTGCCCCCTGCCCCGCCCTCTCGATC
GGTCTGCTTTCAGGATGGAGGCATGTGTGAGGGTGGGGCCGGGGGTGGGGAGGGAGAGGAAAAC
AAGAGCCTACGTCTGCCTTCATTGCTTCTACCCGACAGAGTCAGCAACTGTTTTCCTTAGAGAC
CCCCTAACCCTTGCACACGACACTACGTCTTTGAGCAAGTGCCAAATTTGTACCGAAGCGATCA
CCAACTTCATTTGCTTATCCTTCCTTTCTCCTTGTTCTTCTTCCGTTAGGACAGTGTTAAACCT
TAGACAGTCCCTGGAAAGAGCTGACACACCAGCAACTGATGAGACTGGTTTTTGTTCTATTCTG
GTTTTTTTTGTTTGTTTGTTTGTTTTTGTTTTCTTTTTTGTTTTATGGAAACTGTAGGTGCCGT
TCTCAGGTGAAAAGAGAGAGAGAGAGACAGAAATTTAGAGAAAAAAAATATTTTCTGATCTTGG
ATTTCTGTGTGCGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGATTATGGTACATTAGATGCATTCCTATTAGGGAATAATGTCCGGCCATTGTGAGCAA
CACCCCCCATGTGGGACAGCATTCCACCCCTCCTGAGCAAGCGGGCTTAGAAGCAACCTTAACC
TTGATTTTGCACTTCCAGGGGCAATGGAACTAAGTGTAAAGTTCGGAAACTATATTTTTCAGTT
TCTAGTATGCTCATTATAGGGTGGACCTGGTGACCCTGTGTCACGGGCATGTACATGACAGACA
TGGAAACTACCAGCCAAATGCTTCTGGAGGCTCCTTCTCCCTGGACAATTTGCTTTTTCTGACG
TTTGCTTCTTAGTGATCCGTGTGTGTATGCCTGTGTGCGTGTGTTTGTTTTTCCTGTCAAAACT
TTTGAGCAAAGCAATCAACGGTCTTGACTGAACCCGTTTGCCATTTTTCAGAAATAACGGAATT
AGCTTATGCCTCCATTGTTCCGACCTTTCCTGACGGGGAAACAGAACTGATGGTTTTGTAAGAT
TTTTTTCTTTTTATCTCTCCACTCGACGAGGTTAGAGACTGTTTACGTTTCACAAGTGTGGGCC
ATGCATATTTGACGCCCCCAAGGACCAGGATTTGGTTAAATTTCACTGCCACGCCACAAAATGG
AGTCCCTCTTGATGAACACAGAGACCCCCTTAACCAGTGTTGTGGTCCTTCACCGTAAGTCGAG
CCTGCTAAAGATCAATTGCTACAGCCAGCAGAGTGCAGGCTCAGAGCAATAACCAAGAGTGACC
GGACCAGTGGTTCTAATCGCCAACCACAAGGCCAAGACAGTGGTAGACAGAAGACTGTAGCATC
ACACCAGGTCCCTCACGATTGTGTTTAAGAGAGCAAGCGACCCCAGCCAGGGGTTAGAAGTGTT
CCGGTATTCTGTCCATTCTTGTTTTGCCAAATACCACCCCCAAGTTTGATTTTCATACATGAAT
AAGCAAAAAATAGGAAGAAGAGAAAAACTTCTCTTCTCTTCTCAGAAGGCCTTGCTTTGGGGTC
TTGCTTAGAGGAGCTCAACATACCTGCATGTCAGAGGTTTTCTGTTCACGGGATTTTTGGGTTT
TTTGTTTTTGTTTTTGTTTTCTTATGACTGTATTTTCATTTGAATTGCCTCCTTTTGCTAGTGT
AAAATTATGATTAAATAATGATAATAATAATAGTAATAATAATAGTCAGCTGTTTCCAGATTAG
TAAATTATGTATAATTTATTTTATTTCTCCCTATTTTATTCTGCTTTGGATTTGGAAGCTGTTA
GGTATTTAAAACTAATTTCTATTTCTAGCTCACACACACACACACACACACACACACACACACA
CACAGGACTACATGTGTGTATAGACACACCTAGACACATATGTCTGTATGTGTGTATACACACA
GACACTTGCTTCTCTATCCATAACTCCTTCTGTGTTAACAGTTTTGACCCCCATAGCATCAGTT
CTGGTATTTAATATGAAGGGGTGAATTAGTAGGAATGTCGTGTTCAATCTTCATTAACTTATGC
TCTTTCCTCTCATTTTAGTTATTTAATTACCAATTATCTAGAGCCAATTTTTTTGTTTTTGTTT
TGTTTCAAAGCACTCTGAATAAGAAGAAAAAAATAGACACTTGTTTTTATACCGTTATAACGTA
CAATGTGAAAACAGAGTTATTAAAAAAATAATATGTTTCTCTGTGTCTTAACCAACTTCTCCTG
ACTGATGTGGGTTCTCCACTCTCACGTGCTGGGTCCCTGTCTCACAGCACAGTTGAGACAACTT
CGGTTTTCATTTCCTGACCGTGGGCGGCAAGAATACTTTGTTTCAGCTCCAGGTAGATTGCTGC
TGACAGCATCCAAGGCCAAAACCCAACCCAACACAGCAGTGAATCAGAGAGAACTCCCTCTTTG
GTTTGCTTTTGGTTTATCTGAAGGGAGAATGAAACTCTTCACGGTGACCTGTAGCTGCCCAAAC
CCTCCAGTTTCTTTGAGTTTATGTCCGTAACTGAACTGTGCCCAGACAAAACCACAAGGCAAGC
CCATCACAGCATGCCTTTCTTTGTCCCGACATTTTCCTCAGTGGATGTTGGCTTTGTTTTATCC
AAGAGTTTGCCCTAGGGGACAACACAAAAGCAAAAGTGATTCTGCTCGAGGCTAAAGCCCACGT
AAGTCACTTGGGGGGGAGGAGCTTTGAATGGTGACTCTAACAACATAATGCCTTGGGTCCATTG
CTTGGGCGATGATTTCTGTAAAGGATCTTATAGCTTTACATTCTTTCTATGTCACACGAAAGCC
AAGTAAGACATGGTAGAGGGAATGAGATAAAGTGGAAAGGCAAACCTCAGCCAATAGCCCCTCC
CCCTTCTTCCCTCTCCCTGGCTTGTGGCTGTAAGCCACGCCCATCTGTCTTTCTGCCCCCACCC
CATCTTCCCTTCCACACACATTTATACCAAAACTGAAGAGTAACATTGCCAATTTCTTCTTTTT
CTATTTGTTATCGGGACCCCTGAAACTAGTCACGTTTGATAGAAATCTAAGAAAAACATTCAGT
GGAGAAGGAGGTTGGAGTTCTTTGTAAGTCAATAATAATTTGGCTAGCTGTTACAAACAGAAAG
TCGCACACACTTCTGTGTAATTTTTACTCAAATCAGTCAAGTGGACTCTGAAAGTTCATTCGTT
TCTAGCTAAGATTCGCCTTTTTGTAAAACCCTTCCCACTGGACATCAGTATCATGGTTGGAACC
AAATCTCCCCATAGGGGATGAAGATCAGAGAGTAAAGTTTCCTACAATGAGACCGCTCAGTATG
TTTAACTTCTAAAGGACAGTTTACCTTAGTCTGCTTGAGGGAAATTATGTTCACCATTTTGTGG
TGTGTTTTCAGATATTTCCGTAACGCGGGGGTCGGACGGTGTCCTCGGAAGAATTTTCCTCTGT
CTCACTTAAAAACTTAAGGGATAGCTATACAGTCTTTACTCTGAAGGGTAAATTATTGAATTGT
GATAACTGTATATTTACAGACAGGTTTATAAAAATATTTGTCTATCAAATTAATAGTGAAATAA
AACTTTTATGAGGTTCGCAAGGAAGAAATACGAAAGCTACTTAAAGTGGCGGATCTATCTCATT
GCCTCTTAGGGCAAAGACATTTCTTTAAGCCAGGTTGACACAGTATTTAATTTTGCAGTCCCAC
AGGTTGAAGGTAACATGCTGAGTTTCCTACTGACGGTCCCTGTCCTCCCCCCAGTGTCTGTCAC
TGGTCCACTAAAGGCAGTATTTATTCAGGCTCCCCTGGCTCTAAAGCACTTAGTCCTCCTGACA
GTTTGGATTTCACAAGTGAAAAAGTTTTGTTTTGTTTTATTTTGTTATTTTTTAAATGATTTAA
ATAAAAAAAAATAGAAGAGACAATCAATGCCTGGAGCTTAAAACAAAGTCTGTGCAAACTACCA
TCTCACTTGAAATTTAATAAAATAAGAAATCGTGTAAATATAACATAGAGTTATAGATTTCTAT
TTTGTTCATAACATAGTGTAATATAAGTTGTATATTTTCATGTTTTTTGGGTTTTATGTTATCA
TTCATGCCACAATGAGAATAAAGCAGGAGTTTGTGTACTCTTGGGAAAAAGAAAAAGACAAAAA
AATAAGATGTGGGTTTCCGCCAACCTGGTTTTTTTTTGTTTTGTTTTCGTTTTTTTTTTTTTTT
TGTTTTGTTTTGTTTTGTTTTGCTTTTCTGTTCTTGTTTTCATTTTGTCTTGTTTGTTTGGCCT
TCCCCCTTTCAGTATTACTGCCGTGCAAGGCATCAATAAAACAGCAAATGTGTTCTTTATCTAT
TA

hide sequence

RefSeq Acc Id:

XM_039106952 ⟹ XP_038962880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 178,968,048 (-)	NCBI
mRatBN7.2	4	176,781,375 - 177,237,409 (-)	NCBI

RefSeq Acc Id:

XM_039106953 ⟹ XP_038962881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 179,467,681 (-)	NCBI
mRatBN7.2	4	176,781,375 - 177,736,833 (-)	NCBI

RefSeq Acc Id:

XM_063285440 ⟹ XP_063141510

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 179,278,245 (-)	NCBI

RefSeq Acc Id:

XM_063285441 ⟹ XP_063141511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 178,890,462 (-)	NCBI

RefSeq Acc Id:

XM_063285442 ⟹ XP_063141512

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 178,624,677 (-)	NCBI

RefSeq Acc Id:

XM_063285443 ⟹ XP_063141513

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	178,516,865 - 178,624,624 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014082	(Get FASTA)	NCBI Sequence Viewer
	NP_001258196	(Get FASTA)	NCBI Sequence Viewer
	NP_001402750	(Get FASTA)	NCBI Sequence Viewer
	NP_001402751	(Get FASTA)	NCBI Sequence Viewer
	NP_001402752	(Get FASTA)	NCBI Sequence Viewer
	XP_006237666	(Get FASTA)	NCBI Sequence Viewer
	XP_008761571	(Get FASTA)	NCBI Sequence Viewer
	XP_017447891	(Get FASTA)	NCBI Sequence Viewer
	XP_017447899	(Get FASTA)	NCBI Sequence Viewer
	XP_038962880	(Get FASTA)	NCBI Sequence Viewer
	XP_038962881	(Get FASTA)	NCBI Sequence Viewer
	XP_063141510	(Get FASTA)	NCBI Sequence Viewer
	XP_063141511	(Get FASTA)	NCBI Sequence Viewer
	XP_063141512	(Get FASTA)	NCBI Sequence Viewer
	XP_063141513	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH86415	(Get FASTA)	NCBI Sequence Viewer
	BAB71725	(Get FASTA)	NCBI Sequence Viewer
	EDM01459	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020729
	ENSRNOP00000052404
	ENSRNOP00000052404.3
	ENSRNOP00000073853
	ENSRNOP00000079278
GenBank Protein	F1M8W4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001258196 ⟸ NM_001271267
- Peptide Label:	isoform 2
- UniProtKB:	F1LQN4 (UniProtKB/Swiss-Prot), Q5U1X4 (UniProtKB/Swiss-Prot), F1M8W4 (UniProtKB/TrEMBL), A6IMY0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTDPDLPQEFERMSSKRPASPYGETDGEVAMVTSRQKVEEEESERLPAFHLPLHVSFPNKPHS EEFQPVSLLTQEACGPRTPAAQHSTMEVDGNKVMSSLAPYNSSTSPQKAEEGGRQSGESVSSAA LGTPERRKGSLADVVDTLKQRKMEELIKNEPEDTPSIEKLLSKDWKDKLLAMGSGNFGEIKGTP ESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLL QQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIP TTMAAAAAATPGLGPLQLQQFYAAQLAAMQVSPGGKLLGLPQGNLGAAVSPTSIHTDKSTNSPP PKSKDEVAQPLNLSAKPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIG YLNDHDAVTKAIQEARQMKEQLRREQQALDGKVAVVNSIGISNCRTEKEKTTLESLTQQLAVKQ NEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQ AFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKL RIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEP GMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYEEYEEEEEDPDVDYGSDSENHIAGQAN hide sequence

RefSeq Acc Id:	XP_006237666 ⟸ XM_006237604
- Peptide Label:	isoform X1
- UniProtKB:	A6IMY0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTDPDLPQEFERMSSKRPASPYGETDGEVAMVTSRQKVEEEESERLPAFHLPLHVSFPNKPHS EEFQPVSLLTQEACGPRTPAAQHSTMEVDGNKVMSSLAPYNSSTSPQKAEEGGRQSGESVSSAA LGTPERRKGSLADVVDTLKQRKMEELIKNEPEDTPSIEKLLSKDWKDKLLAMGSGNFGEIKGTP ESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLL QQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLI PTTMAAAAAATPGLGPLQLQQFYAAQLAAMQVSPGGKLLGLPQGNLGAAVSPTSIHTDKSTNSP PPKSKDEVAQPLNLSAKPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALASPSARVSTI GYLNDHDAVTKAIQEARQMKEQLRREQQALDGKVAVVNSIGISNCRTEKEKTTLESLTQQLAVK QNEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKIL QAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKK LRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPE PGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYEEYEEEEEDPDVDYGSDSENHIAGQAN hide sequence

RefSeq Acc Id:	XP_008761571 ⟸ XM_008763349
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZMP4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTDPDLPQEFERMSSKRPASPYGETDGEVAMVTSRQKVEEEESERLPAFHLPLHEVDGNKVMS SLAPYNSSTSPQKAEEGGRQSGESVSSAALGTPERRKGSLADVVDTLKQRKMEELIKNEPEDTP SIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLA ASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTL AAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQFYAAQLAAMQVSPG GKLLGLPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPASPTSPHMP ALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQALDGKVA VVNSIGISNCRTEKEKTTLESLTQQLAVKQNEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRES RGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQA RLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAG VVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYEE YEEEEEDPDVDYGSDSENHIAGQAN hide sequence

RefSeq Acc Id:	XP_017447891 ⟸ XM_017592402
- Peptide Label:	isoform X3
- UniProtKB:	A6IMY0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSSKRPASPYGETDGEVAMVTSRQKVEEEESERLPAFHLPLHVSFPNKPHSEEFQPVSLLTQEA CGPRTPAAQHSTMEVDGNKVMSSLAPYNSSTSPQKAEEGGRQSGESVSSAALGTPERRKGSLAD VVDTLKQRKMEELIKNEPEDTPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGM INQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQI QQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPG LGPLQLQQFYAAQLAAMQVSPGGKLLGLPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLN LSAKPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYLNDHDAVTKAI QEARQMKEQLRREQQALDGKVAVVNSIGISNCRTEKEKTTLESLTQQLAVKQNEEGKFSHGMMD FNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISK ILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNR RQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVK GEEPHIKEEIQAEDINGEIYEEYEEEEEDPDVDYGSDSENHIAGQAN hide sequence

RefSeq Acc Id:

XP_017447899 ⟸ XM_017592410

- Peptide Label:

isoform X7

- Sequence:

show sequence

MAAAAAATPGLGPLQLQQFYAAQLAAMQVSPGGKLLGLPQGNLGAAVSPTSIHTDKSTNSPPPK
SKDEVAQPLNLSAKPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALASPSARVSTIGYL
NDHDAVTKAIQEARQMKEQLRREQQALDGKVAVVNSIGISNCRTEKEKTTLESLTQQLAVKQNE
EGKFSHGMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAF
PDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRI
GEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGM
PVIQSTYGVKGEEPHIKEEIQAEDINGEIYEEYEEEEEDPDVDYGSDSENHIAGQAN

hide sequence

Ensembl Acc Id:

ENSRNOP00000052404 ⟸ ENSRNOT00000055542

Ensembl Acc Id:

ENSRNOP00000073853 ⟸ ENSRNOT00000087434

Ensembl Acc Id:

ENSRNOP00000020729 ⟸ ENSRNOT00000020729

RefSeq Acc Id:	XP_038962881 ⟸ XM_039106953
- Peptide Label:	isoform X3
- UniProtKB:	A6IMY0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962880 ⟸ XM_039106952
- Peptide Label:	isoform X2
- UniProtKB:	A6IMY0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000079278 ⟸ ENSRNOT00000096663

RefSeq Acc Id:	NP_001402751 ⟸ NM_001415822
- Peptide Label:	isoform 4
- UniProtKB:	A0A8L2QAC4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402752 ⟸ NM_001415823
- Peptide Label:	isoform 5
- UniProtKB:	A0A8I5ZMP4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001402750 ⟸ NM_001415821
- Peptide Label:	isoform 3
- UniProtKB:	A0A8L2QAC4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001014082 ⟸ NM_001014060
- Peptide Label:	isoform 1

RefSeq Acc Id:	XP_063141510 ⟸ XM_063285440
- Peptide Label:	isoform X3
- UniProtKB:	A6IMY0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141511 ⟸ XM_063285441
- Peptide Label:	isoform X5
- UniProtKB:	A0A8L2QAC4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141512 ⟸ XM_063285442
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063141513 ⟸ XM_063285443
- Peptide Label:	isoform X8

Protein Domains

HMG box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M8W4-F1-model_v2	AlphaFold	F1M8W4	1-763	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620471	AgrOrtholog
BioCyc Gene	G2FUF-42476	BioCyc
Ensembl Genes	ENSRNOG00000027869	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000020729	ENTREZGENE
	ENSRNOT00000055542	ENTREZGENE
	ENSRNOT00000055542.4	UniProtKB/Swiss-Prot
	ENSRNOT00000087434	ENTREZGENE
	ENSRNOT00000096663	ENTREZGENE
Gene3D-CATH	1.10.30.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7131922	IMAGE-MGC_LOAD
InterPro	HMG_box_dom	UniProtKB/Swiss-Prot
	HMG_box_dom_sf	UniProtKB/Swiss-Prot
	SOX/SOX-like_TF	UniProtKB/Swiss-Prot
KEGG Report	rno:140587	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105885	IMAGE-MGC_LOAD
NCBI Gene	140587	ENTREZGENE
PANTHER	FI18025P1	UniProtKB/Swiss-Prot
	TRANSCRIPTION FACTOR SOX-5	UniProtKB/Swiss-Prot
Pfam	HMG_box	UniProtKB/Swiss-Prot
PhenoGen	Sox5	PhenoGen
PROSITE	HMG_BOX_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000027869	RatGTEx
SMART	HMG	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47095	UniProtKB/Swiss-Prot
UniProt	A0A0G2K6K9_RAT	UniProtKB/TrEMBL
	A0A8I5ZMP4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QAC4	ENTREZGENE, UniProtKB/TrEMBL
	A6IMY0	ENTREZGENE, UniProtKB/TrEMBL
	F1LQN4	ENTREZGENE
	F1M8W4	ENTREZGENE
	Q5U1X4	ENTREZGENE
	SOX5_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	F1LQN4	UniProtKB/Swiss-Prot
	Q5U1X4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-08-05	Sox5	SRY-box transcription factor 5	Sox5	SRY box 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-11-12	Sox5	SRY box 5	Sox5	SRY (sex determining region Y)-box 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Sox5	SRY (sex determining region Y)-box 5	Sox5l1	SRY-box containing gene 5-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-04-17	Sox5l1	SRY-box containing gene 5-like 1	Sox5	SRY (sex determining region Y)-box 5	Data merged from RGD:1359322	737654	PROVISIONAL
2010-04-20	Sox5	SRY (sex determining region Y)-box 5	LOC312831	similar to SRY (sex determining region Y)-box 5 isoform a	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-29	LOC312831	similar to SRY (sex determining region Y)-box 5 isoform a			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-07-08	Sox5	SRY-box containing gene 5		SRY (sex determining region Y)-box 5	Name updated	1299863	APPROVED
2002-08-07	Sox5	SRY (sex determining region Y)-box 5			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM