Vamp5 (vesicle-associated membrane protein 5) - Rat Genome Database

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Gene: Vamp5 (vesicle-associated membrane protein 5) Rattus norvegicus
Analyze
Symbol: Vamp5
Name: vesicle-associated membrane protein 5
RGD ID: 620419
Description: Predicted to be involved in Golgi to plasma membrane protein transport. Predicted to act upstream of or within skeletal muscle tissue development. Located in trans-Golgi network. Orthologous to human VAMP5 (vesicle associated membrane protein 5); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: myobrevin; VAMP-5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84105,982,004 - 105,993,247 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4105,982,009 - 105,993,247 (-)EnsemblGRCr8
mRatBN7.24104,423,813 - 104,435,059 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,423,820 - 104,426,212 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4109,804,079 - 109,815,395 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,579,195 - 105,590,508 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,193,451 - 104,204,843 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,231,561 - 100,232,560 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,231,561 - 100,232,559 (-)Ensemblrn6Rnor6.0
Rnor_5.04165,002,320 - 165,003,319 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44105,673,889 - 105,674,892 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera493,578,068 - 93,579,067 (-)NCBICelera
RGSC_v3.14105,918,369 - 105,919,371 (-)NCBI
Cytogenetic Map4q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (EXP)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
crocidolite asbestos  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
flavonoids  (EXP)
fulvestrant  (ISO)
gentamycin  (EXP)
ketoconazole  (EXP)
lead diacetate  (EXP)
maneb  (ISO)
melatonin  (ISO)
methimazole  (EXP)
nickel sulfate  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. The cytoplasmic domain of Vamp4 and Vamp5 is responsible for their correct subcellular targeting: the N-terminal extenSion of VAMP4 contains a dominant autonomous targeting signal for the trans-Golgi network. Zeng Q, etal., J Biol Chem 2003 Jun 20;278(25):23046-54. Epub 2003 Apr 6.
7. A novel synaptobrevin/VAMP homologous protein (VAMP5) is increased during in vitro myogenesis and present in the plasma membrane. Zeng Q, etal., Mol Biol Cell 1998 Sep;9(9):2423-37.
Additional References at PubMed
PMID:19675279   PMID:20458337   PMID:20582536   PMID:21151919   PMID:23180306   PMID:23376485   PMID:31505169  


Genomics

Comparative Map Data
Vamp5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84105,982,004 - 105,993,247 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4105,982,009 - 105,993,247 (-)EnsemblGRCr8
mRatBN7.24104,423,813 - 104,435,059 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,423,820 - 104,426,212 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4109,804,079 - 109,815,395 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,579,195 - 105,590,508 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,193,451 - 104,204,843 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,231,561 - 100,232,560 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,231,561 - 100,232,559 (-)Ensemblrn6Rnor6.0
Rnor_5.04165,002,320 - 165,003,319 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44105,673,889 - 105,674,892 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera493,578,068 - 93,579,067 (-)NCBICelera
RGSC_v3.14105,918,369 - 105,919,371 (-)NCBI
Cytogenetic Map4q32NCBI
VAMP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,584,431 - 85,593,406 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,584,431 - 85,593,406 (+)Ensemblhg38GRCh38
GRCh37285,811,554 - 85,820,529 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,665,042 - 85,674,022 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34285,723,188 - 85,732,169NCBI
Celera285,639,815 - 85,648,795 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,708,672 - 85,717,650 (+)NCBIHuRef
CHM1_1285,741,337 - 85,750,317 (+)NCBICHM1_1
T2T-CHM13v2.0285,586,491 - 85,595,466 (+)NCBIT2T-CHM13v2.0
Vamp5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,345,032 - 72,357,451 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,345,777 - 72,357,451 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38672,368,049 - 72,380,468 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,368,794 - 72,380,468 (-)Ensemblmm10GRCm38
MGSCv37672,318,043 - 72,330,462 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36672,298,537 - 72,309,901 (-)NCBIMGSCv36mm8
Celera674,458,535 - 74,470,793 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Vamp5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,911,711 - 1,912,874 (-)Ensembl
ChiLan1.0NW_0049554241,911,711 - 1,912,865 (-)NCBIChiLan1.0ChiLan1.0
VAMP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,789,269 - 40,798,238 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,792,030 - 40,801,023 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,634,555 - 85,646,120 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A87,187,569 - 87,196,530 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,187,569 - 87,196,532 (+)EnsemblpanPan2panpan1.1
VAMP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,488,877 - 39,495,795 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1739,488,938 - 39,495,730 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1739,160,247 - 39,167,171 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01740,235,506 - 40,242,449 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11739,365,034 - 39,371,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,437,087 - 39,443,998 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,836,669 - 39,843,611 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Vamp5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,172,258 - 79,179,181 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,679,232 - 1,686,268 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,679,276 - 1,686,157 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VAMP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl359,175,872 - 59,178,861 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1359,177,460 - 59,185,703 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,238,570 - 62,246,620 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VAMP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,563,300 - 21,572,651 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1421,562,847 - 21,572,340 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604590,896,395 - 90,905,527 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vamp5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,546,713 - 17,556,010 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474917,546,713 - 17,556,045 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Vamp5
93 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:59
Count of miRNA genes:58
Interacting mature miRNAs:58
Transcripts:ENSRNOT00000016984
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)496731383141731383Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)492406430137406430Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)480212111119233320Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)474233320119233320Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)471647492116647492Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)475939858140508796Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)465060960127749483Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)488883695133883695Rat
2317588Eae27Experimental allergic encephalomyelitis QTL 27nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)469036742114036742Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)488883695133883695Rat
2306547Iddm38Insulin dependent diabetes mellitus QTL 38blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)468353567113353567Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
2306545Iddm39Insulin dependent diabetes mellitus QTL 39blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478687630123687630Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)474169813134199155Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)486058928131411333Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)475939858140508796Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)484349032129349032Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463245026129846354Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)464209744109209744Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)482336765127336765Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)464084079109084079Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)486583980131583980Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)463224393108224393Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat

Markers in Region
RH141198  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24104,423,930 - 104,424,116 (+)MAPPERmRatBN7.2
Rnor_6.04100,231,431 - 100,231,616NCBIRnor6.0
Rnor_5.04165,002,190 - 165,002,375UniSTSRnor5.0
RGSC_v3.44105,673,759 - 105,673,944UniSTSRGSC3.4
Celera493,577,938 - 93,578,123UniSTS
RH 3.4 Map4648.2UniSTS
Cytogenetic Map4q33UniSTS
RH140679  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84105,982,285 - 105,983,191 (+)Marker Load Pipeline
mRatBN7.24104,424,094 - 104,425,000 (+)MAPPERmRatBN7.2
Rnor_6.04100,231,595 - 100,232,500NCBIRnor6.0
Rnor_5.04165,002,354 - 165,003,259UniSTSRnor5.0
RGSC_v3.44105,673,923 - 105,674,830UniSTSRGSC3.4
Celera493,578,102 - 93,579,007UniSTS
RH 3.4 Map4649.61UniSTS
Cytogenetic Map4q33UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 67 152 88 90 59 92 59 6 354 191 11 132 81 83 31 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000016984   ⟹   ENSRNOP00000016984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4105,982,009 - 105,993,247 (-)Ensembl
mRatBN7.2 Ensembl4104,423,820 - 104,426,212 (-)Ensembl
Rnor_6.0 Ensembl4100,231,561 - 100,232,559 (-)Ensembl
RefSeq Acc Id: NM_053555   ⟹   NP_446007
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84105,982,004 - 105,993,247 (-)NCBI
mRatBN7.24104,423,813 - 104,435,059 (-)NCBI
Rnor_6.04100,231,561 - 100,232,560 (-)NCBI
Rnor_5.04165,002,320 - 165,003,319 (-)NCBI
RGSC_v3.44105,673,889 - 105,674,892 (-)RGD
Celera493,578,068 - 93,579,067 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_446007 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC97474 (Get FASTA)   NCBI Sequence Viewer  
  EDL91033 (Get FASTA)   NCBI Sequence Viewer  
  EDL91034 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016984
GenBank Protein Q9Z2J5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_446007   ⟸   NM_053555
- UniProtKB: Q9Z2J5 (UniProtKB/Swiss-Prot),   A6IAB5 (UniProtKB/TrEMBL),   A0A140TAB7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016984   ⟸   ENSRNOT00000016984
Protein Domains
v-SNARE coiled-coil homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2J5-F1-model_v2 AlphaFold Q9Z2J5 1-102 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620419 AgrOrtholog
BioCyc Gene G2FUF-44149 BioCyc
Ensembl Genes ENSRNOG00000012659 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016984 ENTREZGENE
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot
InterPro Synaptobrevin UniProtKB/Swiss-Prot
  Synaptobrevin/VAMP UniProtKB/Swiss-Prot
  V_SNARE_CC UniProtKB/Swiss-Prot
  Vamp5 UniProtKB/Swiss-Prot
  VAMP5_R-SNARE_ UniProtKB/Swiss-Prot
KEGG Report rno:89818 UniProtKB/Swiss-Prot
NCBI Gene 89818 ENTREZGENE
PANTHER PTHR47462 UniProtKB/Swiss-Prot
  VESICLE-ASSOCIATED MEMBRANE PROTEIN 5 UniProtKB/Swiss-Prot
Pfam Synaptobrevin UniProtKB/Swiss-Prot
PhenoGen Vamp5 PhenoGen
PIRSF Synaptobrevin_euk UniProtKB/Swiss-Prot
PRINTS SYNAPTOBREVN UniProtKB/Swiss-Prot
PROSITE SYNAPTOBREVIN UniProtKB/Swiss-Prot
  V_SNARE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012659 RatGTEx
Superfamily-SCOP SNARE fusion complex UniProtKB/Swiss-Prot
UniProt A0A140TAB7 ENTREZGENE, UniProtKB/TrEMBL
  A6IAB5 ENTREZGENE, UniProtKB/TrEMBL
  A6IAB6_RAT UniProtKB/TrEMBL
  Q9Z2J5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Vamp5  vesicle-associated membrane protein 5      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Vamp5  vesicle-associated membrane protein 5      Symbol and Name status set to provisional 70820 PROVISIONAL