Slco4a1 (solute carrier organic anion transporter family, member 4a1) - Rat Genome Database

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Gene: Slco4a1 (solute carrier organic anion transporter family, member 4a1) Rattus norvegicus
Analyze
Symbol: Slco4a1
Name: solute carrier organic anion transporter family, member 4a1
RGD ID: 620228
Description: Enables thyroid hormone transmembrane transporter activity. Involved in thyroid hormone metabolic process. Predicted to be located in plasma membrane. Predicted to be active in basolateral plasma membrane. Orthologous to human SLCO4A1 (solute carrier organic anion transporter family member 4A1); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: OATP-E; organic anion-transporting polypeptide E; Slc21a12; sodium-independent organic anion transporter E; solute carrier family 21 (organic anion transporter), member 12; solute carrier family 21 member 12; solute carrier organic anion transporter family member 4A1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Eau4
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,936,735 - 187,955,873 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3187,936,820 - 187,955,871 (+)EnsemblGRCr8
mRatBN7.23167,559,177 - 167,578,307 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,559,316 - 167,578,305 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3171,935,617 - 171,954,604 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,894,703 - 180,913,690 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,560,238 - 177,579,229 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,838,994 - 175,857,985 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,838,994 - 175,857,983 (+)Ensemblrn6Rnor6.0
Rnor_5.03181,259,387 - 181,278,432 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43169,520,588 - 169,539,579 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3165,001,762 - 165,020,934 (-)NCBICelera
RGSC_v3.13169,426,623 - 169,445,613 (+)NCBI
Cytogenetic Map3q43NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-butoxyethanol  (ISO)
2-hydroxypropanoic acid  (ISO)
3,4-dichloroaniline  (ISO)
3-iodothyronamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
chloroprene  (EXP,ISO)
chlorpyrifos  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
enilconazole  (ISO)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
flavonoids  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gardiquimod  (ISO)
genistein  (ISO)
glyphosate  (EXP)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
malathion  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (EXP,ISO)
methyl methanesulfonate  (ISO)
mitoxantrone  (ISO)
nickel sulfate  (ISO)
okadaic acid  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
pentanal  (ISO)
perfluorooctanoic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pravastatin  (EXP,ISO)
propanal  (ISO)
protein kinase inhibitor  (ISO)
pyrazinecarboxamide  (EXP)
quercetin  (ISO)
quinolin-8-ol  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
streptozocin  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP,ISO)
vanadium atom  (ISO)
vanadium(0)  (ISO)
withaferin A  (ISO)
zaragozic acid A  (EXP,ISO)
zidovudine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Identification of thyroid hormone transporters in humans: different molecules are involved in a tissue-specific manner. Fujiwara K, etal., Endocrinology 2001 May;142(5):2005-12.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Slco4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,936,735 - 187,955,873 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3187,936,820 - 187,955,871 (+)EnsemblGRCr8
mRatBN7.23167,559,177 - 167,578,307 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,559,316 - 167,578,305 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3171,935,617 - 171,954,604 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03180,894,703 - 180,913,690 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,560,238 - 177,579,229 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03175,838,994 - 175,857,985 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,838,994 - 175,857,983 (+)Ensemblrn6Rnor6.0
Rnor_5.03181,259,387 - 181,278,432 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43169,520,588 - 169,539,579 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3165,001,762 - 165,020,934 (-)NCBICelera
RGSC_v3.13169,426,623 - 169,445,613 (+)NCBI
Cytogenetic Map3q43NCBI
SLCO4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,642,503 - 62,690,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,642,440 - 62,685,785 (+)Ensemblhg38GRCh38
GRCh372061,273,855 - 61,303,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,744,242 - 60,774,092 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342060,744,241 - 60,774,092NCBI
Celera2057,949,700 - 57,979,500 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,991,392 - 58,013,962 (+)NCBIHuRef
CHM1_12061,174,804 - 61,204,654 (+)NCBICHM1_1
T2T-CHM13v2.02064,441,223 - 64,489,475 (+)NCBIT2T-CHM13v2.0
Slco4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,098,019 - 180,116,646 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,098,038 - 180,116,660 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382180,456,226 - 180,474,853 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,456,245 - 180,474,867 (+)Ensemblmm10GRCm38
MGSCv372180,195,683 - 180,209,557 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362180,390,386 - 180,404,260 (+)NCBIMGSCv36mm8
Celera2184,546,133 - 184,560,065 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.99NCBI
Slco4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,436,009 - 1,455,940 (-)Ensembl
ChiLan1.0NW_0049555281,436,058 - 1,449,178 (-)NCBIChiLan1.0ChiLan1.0
SLCO4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,431,172 - 68,476,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,424,292 - 68,469,628 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,030,815 - 59,076,132 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,339,309 - 60,355,374 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,339,319 - 60,355,374 (+)EnsemblpanPan2panpan1.1
SLCO4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,538,847 - 46,560,728 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,544,116 - 46,560,824 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2445,720,824 - 45,744,997 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02447,405,510 - 47,429,748 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,412,130 - 47,429,757 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,511,609 - 46,530,767 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,630,127 - 46,654,151 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,389,828 - 47,409,029 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slco4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,746,192 - 194,768,789 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,199,850 - 10,222,435 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,199,912 - 10,222,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLCO4A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,947,628 - 61,969,970 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11761,947,636 - 61,969,391 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLCO4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,559,333 - 1,589,458 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605049,449,109 - 49,493,253 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slco4a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,458,900 - 28,472,105 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474128,450,422 - 28,470,579 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Slco4a1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15157,546,078 - 157,565,087 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:79
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000029876
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3152055202189428310Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)3145335553189428310Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3151075912189428310Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3161492708189428310Rat
1582256Insul9Insulin level QTL 94.40.0016blood insulin amount (VT:0001560)absolute change in serum insulin level (CMO:0002038)3155759447189428310Rat
1582248Insul7Insulin level QTL 73.90.0041blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3151075912189428310Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3181611379189428310Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3166376089189428310Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3151075912189428310Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3144575244189428310Rat
1582213Insul6Insulin level QTL 63.70.0009blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)3155759447189428310Rat
1598854Memor10Memory QTL 102exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)3166376089189428310Rat

Markers in Region
RH141177  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23167,578,111 - 167,578,261 (+)MAPPERmRatBN7.2
Rnor_6.03175,857,790 - 175,857,939NCBIRnor6.0
Rnor_5.03181,259,433 - 181,259,582UniSTSRnor5.0
RGSC_v3.43169,539,384 - 169,539,533UniSTSRGSC3.4
Celera3165,001,808 - 165,001,957UniSTS
RH 3.4 Map31531.7UniSTS
Cytogenetic Map3q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 60 161 88 88 57 89 57 6 343 181 11 135 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000080656   ⟹   ENSRNOP00000074703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3187,936,820 - 187,955,871 (+)Ensembl
mRatBN7.2 Ensembl3167,559,316 - 167,578,305 (+)Ensembl
Rnor_6.0 Ensembl3175,838,994 - 175,857,983 (+)Ensembl
RefSeq Acc Id: NM_133608   ⟹   NP_598292
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,936,882 - 187,955,873 (+)NCBI
mRatBN7.23167,559,316 - 167,578,307 (+)NCBI
Rnor_6.03175,838,994 - 175,857,985 (+)NCBI
Rnor_5.03181,259,387 - 181,278,432 (-)NCBI
RGSC_v3.43169,520,588 - 169,539,579 (+)RGD
Celera3165,001,762 - 165,020,934 (-)RGD
Sequence:
RefSeq Acc Id: XM_017591449   ⟹   XP_017446938
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,936,987 - 187,955,873 (+)NCBI
mRatBN7.23167,559,420 - 167,577,679 (+)NCBI
Rnor_6.03175,839,098 - 175,857,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104196   ⟹   XP_038960124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,936,737 - 187,953,592 (+)NCBI
mRatBN7.23167,559,179 - 167,576,027 (+)NCBI
RefSeq Acc Id: XM_039104197   ⟹   XP_038960125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,936,735 - 187,953,056 (+)NCBI
mRatBN7.23167,559,177 - 167,575,497 (+)NCBI
RefSeq Acc Id: XM_063283042   ⟹   XP_063139112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,947,134 - 187,955,873 (+)NCBI
RefSeq Acc Id: XR_005501764
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,936,739 - 187,954,612 (+)NCBI
mRatBN7.23167,559,184 - 167,577,046 (+)NCBI
RefSeq Acc Id: XR_005501765
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,936,741 - 187,954,668 (+)NCBI
mRatBN7.23167,559,187 - 167,577,104 (+)NCBI
RefSeq Acc Id: NP_598292   ⟸   NM_133608
- UniProtKB: Q99N01 (UniProtKB/Swiss-Prot),   Q4V8N6 (UniProtKB/TrEMBL),   A0A0G2K8R0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017446938   ⟸   XM_017591449
- Peptide Label: isoform X1
- UniProtKB: Q99N01 (UniProtKB/Swiss-Prot),   Q4V8N6 (UniProtKB/TrEMBL),   A0A0G2K8R0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074703   ⟸   ENSRNOT00000080656
RefSeq Acc Id: XP_038960125   ⟸   XM_039104197
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038960124   ⟸   XM_039104196
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139112   ⟸   XM_063283042
- Peptide Label: isoform X4
Protein Domains
Kazal-like   Major facilitator superfamily (MFS) profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99N01-F1-model_v2 AlphaFold Q99N01 1-723 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692735
Promoter ID:EPDNEW_R3260
Type:single initiation site
Name:Slco4a1_1
Description:solute carrier organic anion transporter family, member 4a1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03175,839,034 - 175,839,094EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620228 AgrOrtholog
BioCyc Gene G2FUF-46335 BioCyc
Ensembl Genes ENSRNOG00000053430 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000080656 ENTREZGENE
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7441748 IMAGE-MGC_LOAD
  IMAGE:7444297 IMAGE-MGC_LOAD
InterPro Kazal_dom UniProtKB/Swiss-Prot
  Kazal_dom_sf UniProtKB/Swiss-Prot
  MFS_dom UniProtKB/Swiss-Prot
  MFS_trans_sf UniProtKB/Swiss-Prot
  OATP UniProtKB/Swiss-Prot
MGC_CLONE MGC:114266 IMAGE-MGC_LOAD
  MGC:114267 IMAGE-MGC_LOAD
NCBI Gene 171144 ENTREZGENE
PANTHER PTHR11388 UniProtKB/Swiss-Prot
  SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 4A1 UniProtKB/Swiss-Prot
Pfam Kazal_2 UniProtKB/Swiss-Prot
  OATP UniProtKB/Swiss-Prot
PhenoGen Slco4a1 PhenoGen
PROSITE KAZAL_2 UniProtKB/Swiss-Prot
  MFS UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000053430 RatGTEx
Superfamily-SCOP SSF100895 UniProtKB/Swiss-Prot
  SSF103473 UniProtKB/Swiss-Prot
UniProt A0A0G2K8R0 ENTREZGENE, UniProtKB/TrEMBL
  A6KMA0_RAT UniProtKB/TrEMBL
  Q4V8N6 ENTREZGENE, UniProtKB/TrEMBL
  Q99N01 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Slco4a1  solute carrier organic anion transporter family, member 4a1  Slc21a12  solute carrier family 21 (organic anion transporter), member 12  Symbol and Name updated 1299863 APPROVED
2002-08-07 Slc21a12  solute carrier family 21 (organic anion transporter), member 12      Symbol and Name status set to provisional 70820 PROVISIONAL