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Gene: Caskin1 (CASK interacting protein 1) Rattus norvegicus

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Symbol:

Caskin1

Name:

CASK interacting protein 1

RGD ID:

620191

Description:

Enables protein domain specific binding activity. Involved in signal transduction. Located in cytoplasm. Orthologous to human CASKIN1 (CASK interacting protein 1); INTERACTS WITH acetamide; acrylamide; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cask-interacting protein 1; caskin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CASKIN1 (CASK interacting protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Caskin1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Caskin1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CASKIN1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CASKIN1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Caskin1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CASKIN1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CASKIN1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Caskin1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Caskin1 (CASK interacting protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CASKIN1 (CASK interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Caskin1 (CASK interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	caskin1 (CASK interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	caskin1 (CASK interacting protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-9d4.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C46H3.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C46H3.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ckn	Alliance	DIOPT (Hieranoid\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	caskin1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	caskin1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,016,780 - 14,037,927 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	14,018,012 - 14,037,924 (+)	Ensembl				GRCr8
mRatBN7.2	10	13,512,684 - 13,533,380 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,513,465 - 13,533,377 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	18,259,991 - 18,279,926 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,748,836 - 17,768,771 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,248,023 - 13,267,958 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,853,107 - 13,874,254 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,854,339 - 13,874,254 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	13,670,657 - 13,691,239 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	13,740,593 - 13,760,485 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	13,193,740 - 13,213,647 (+)	NCBI		Celera
RGSC_v3.1	10	13,740,569 - 13,760,484 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

diethylstilbestrol (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

ethanol (ISO)

FR900359 (ISO)

fulvestrant (ISO)

lead(0) (ISO)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

phenylmercury acetate (ISO)

phenytoin (EXP)

piperonyl butoxide (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sinapic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of postsynaptic density assembly (IBA,IEA,ISO)

signal transduction (IBA,IPI)

Cellular Component

cytoplasm (IDA,IEA)

glutamatergic synapse (IBA,IEA,ISO)

postsynapse (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

protein binding (IPI,ISO)

protein domain specific binding (IDA)

References

References - curated

#	Reference Title	Reference Citation
1.	High levels of structural disorder in scaffold proteins as exemplified by a novel neuronal protein, CASK-interactive protein1.	Balazs A, etal., FEBS J. 2009 Jul;276(14):3744-56. doi: 10.1111/j.1742-4658.2009.07090.x. Epub 2009 Jun 11.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	CASK participates in alternative tripartite complexes in which Mint 1 competes for binding with caskin 1, a novel CASK-binding protein.	Tabuchi K, etal., J Neurosci 2002 Jun 1;22(11):4264-73.

Additional References at PubMed

PMID:8889548	PMID:21763699	PMID:22153505	PMID:30053369	PMID:32357304

Genomics

Comparative Map Data

Caskin1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,016,780 - 14,037,927 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	14,018,012 - 14,037,924 (+)	Ensembl				GRCr8
mRatBN7.2	10	13,512,684 - 13,533,380 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,513,465 - 13,533,377 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	18,259,991 - 18,279,926 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	17,748,836 - 17,768,771 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,248,023 - 13,267,958 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	13,853,107 - 13,874,254 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	13,854,339 - 13,874,254 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	13,670,657 - 13,691,239 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	13,740,593 - 13,760,485 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	13,193,740 - 13,213,647 (+)	NCBI		Celera
RGSC_v3.1	10	13,740,569 - 13,760,484 (+)	NCBI
Cytogenetic Map	10	q12	NCBI

CASKIN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	2,177,180 - 2,196,605 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	2,177,180 - 2,196,605 (-)	Ensembl			hg38	GRCh38
GRCh37	16	2,227,181 - 2,246,606 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	2,167,185 - 2,186,466 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	2,167,184 - 2,186,466	NCBI
Celera	16	2,441,604 - 2,476,669 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	2,153,438 - 2,188,429 (-)	NCBI		HuRef
CHM1_1	16	2,227,157 - 2,246,403 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	2,199,649 - 2,219,075 (-)	NCBI		T2T-CHM13v2.0

Caskin1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	24,706,871 - 24,727,883 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	24,707,575 - 24,727,645 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	24,487,897 - 24,508,909 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	24,488,601 - 24,508,671 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	24,625,728 - 24,645,854 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	24,216,383 - 24,236,509 (+)	NCBI		MGSCv36	mm8
Celera	17	25,004,604 - 25,024,884 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.4	NCBI

Caskin1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	15,030,219 - 15,092,786 (+)	Ensembl
ChiLan1.0	NW_004955442	15,075,427 - 15,092,786 (+)	NCBI	ChiLan1.0	ChiLan1.0

CASKIN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	2,680,201 - 2,699,622 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	6,461,014 - 6,480,427 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	1,035,826 - 1,055,005 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	2,278,390 - 2,293,059 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

CASKIN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	38,776,710 - 38,788,253 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	38,776,710 - 38,786,727 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	40,010,760 - 40,027,402 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	39,079,958 - 39,096,763 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	6	38,764,968 - 38,781,377 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	38,737,294 - 38,753,692 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	39,216,016 - 39,232,351 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Caskin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	104,841,356 - 104,853,537 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	1,856,603 - 1,866,617 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	1,856,529 - 1,868,107 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CASKIN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	39,794,293 - 39,811,009 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	39,794,400 - 39,811,381 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	42,369,985 - 42,381,726 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CASKIN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	2,071,884 - 2,091,539 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	2,073,253 - 2,091,346 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666068	28,970,627 - 28,990,165 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Caskin1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624913	62,332 - 77,819 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624913	62,217 - 79,228 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Caskin1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	1,771,856 - 1,792,497 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Caskin1
53 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	427
Count of miRNA genes:	131
Interacting mature miRNAs:	171
Transcripts:	ENSRNOT00000004486, ENSRNOT00000043951
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6661118	35509383	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5893811	50893811	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5893811	50893811	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6877142	51877142	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35730538	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	30004247	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5893811	50893811	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	922197	45922197	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	2103708	47103708	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5893811	50893811	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	1	17749933	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38832698	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	87	59	6	350	187	11	139	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_080690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA819372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC103090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF451975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB733612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB738051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB800449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000004486 ⟹ ENSRNOP00000004486

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	14,018,012 - 14,037,924 (+)	Ensembl
mRatBN7.2 Ensembl	10	13,513,465 - 13,533,377 (+)	Ensembl
Rnor_6.0 Ensembl	10	13,854,339 - 13,874,247 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000043951 ⟹ ENSRNOP00000039956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	14,018,012 - 14,037,924 (+)	Ensembl
mRatBN7.2 Ensembl	10	13,513,465 - 13,533,377 (+)	Ensembl
Rnor_6.0 Ensembl	10	13,854,362 - 13,874,254 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109050 ⟹ ENSRNOP00000082739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	14,018,012 - 14,037,924 (+)	Ensembl
mRatBN7.2 Ensembl	10	13,513,465 - 13,533,377 (+)	Ensembl

RefSeq Acc Id:

NM_080690 ⟹ NP_542421

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,018,035 - 14,037,927 (+)	NCBI
mRatBN7.2	10	13,513,488 - 13,533,380 (+)	NCBI
Rnor_6.0	10	13,854,362 - 13,874,254 (+)	NCBI
Rnor_5.0	10	13,670,657 - 13,691,239 (+)	NCBI
RGSC_v3.4	10	13,740,593 - 13,760,485 (+)	RGD
Celera	10	13,193,740 - 13,213,647 (+)	RGD

Sequence:

show sequence

CCAGCCCGAGCCCGAGCCCGAGCCCGAACCCACGGAGGGCGCTGGGCGGCGGGCGGCGGGCGGC
GCAGGGAGCGCGGGCTGGAAAGGATGCGATCGCAGACGCCGAGCCGCCGCTGCGTCTGAGCCGC
CGAGAGCACCGAGCGCCGCGTCGCTGCGGGCCCGGCGGCGCCATGGGGAAGGAGCAGGAGCTGG
TGCAGGCAGTGAAGGCGGAGGACGTGGGGACCGCGCAGAGGCTGCTGCAGAGGCCGCGGCCGGG
GAAGGCCAAGCTCCTGGGCTCTACCAAGAAGATCAATGTCAACTTCCAGGACCCAGATGGCTTC
TCAGCCCTGCACCATGCTGCCCTGAATGGCAACACCGAATTGATCTCTCTGCTGCTGGAGGCTC
AGGCTGCTGTAGACATCAAGGACAACAAAGGCATGCGGCCGCTGCACTACGCGGCCTGGCAGGG
CCGGAAGGAGCCCATGAAGCTGGTGCTGAAGGCAGGCTCAGCAGTGAATGTCCCATCCGACGAG
GGCCACATACCCCTGCATTTGGCTGCCCAGCATGGTCACTACGATGTGTCAGAGATGCTACTGC
AGCATCAGTCCAACCCCTGCATGGTAGACAACTCCGGAAAGACACCTCTGGACCTGGCCTGCGA
GTTTGGCCGCGTAGGGGTGGTCCAGCTGCTGCTAAGTAGCAACATGTGTGCGGCCCTGCTGGAG
CCCCGACCAGGGGACACCACTGATCCCAACGGTACCAGTCCCCTGCACCTGGCCGCCAAGAATG
GCCACATCGACATAATTAGGCTCCTCCTCCAGGCCGGCATCGACATTAACCGCCAGACCAAGTC
TGGCACAGCCCTTCATGAGGCTGCACTCTGTGGGAAGACAGAAGTGGTCCGGCTACTGCTGGAT
AGTGGGATCAATGCCCAGGTGAGGAACACCTACAGCCAGACAGCACTGGACATCGTGCACCAAT
TTACTACATCCCAGGCCAGCAAGGAGATCAAGCAACTGCTTCGAGAGGCTTCAGCGGCTCTCCA
GGTCCGGGCTACAAAGGATTACTGTAACAATTATGATCTGACCAGTCTCAATGTGAAGGCTGGG
GACATTATCACGGTACTTGAACAGCATCCAGATGGCCGGTGGAAAGGCTGTATCCATGACAACC
GGACAGGCAATGACAGGGTGGGCTACTTCCCATCCTCGCTGGGGGAGGCTATTGTCAAGCGAGC
CGGTTCCCGGACAGGCAGCGAGCCAAGCCCACCCCAGGGAGGTGGCTCACTGGGTCCCTCCGCA
CCCCCGGAGGAGATCTGGGTGCTGAGGAAGCCTTTTGCAGGTGGAGATCGCAGTGGCAGCTTGA
GCAATGTGGCTGGGGGCAGGAGTACTGGGGGCCATGCCCTGCATGCAGGCGCTGAAGGGGTTAA
GCTCCTGGCAACTGTGCTTTCCCAGAAGTCAGTCTCCGAGTCCAGCCCAGGAGATAGCCCGGTC
AAGCCTCCTGAGGGCTCTTCAGGTGCTGCCCGGTCCCAGCCTCCAGCAGCCCATGCTGGGCAGG
TATATGGGGAGCAGCCACCCAAGAAGCTGGAATCGTCCTCGGCCTCTGAGGGCAAGAGTGCTGA
GGCAGTCAGTCAGTGGCTTGCCACATTCCAGCTACAGCTCTATGCCCCCAACTTCACCAGTGCT
GGCTATGACCTGCCCACCATCAGTCGCATGACCCCTGAGGACCTCACAGCCATTGGTGTTACCA
AGCCAGGCCACCGTAAGAAGATTACGGCAGAGATCAGCGGCCTGAACATCCCTGACTGCCTGCC
TGAACACAAACCCGCTAACCTGGCTGTGTGGCTGTCAATGATTGGTCTGGCCCAGTATTACAAG
GTGCTGGTGGACAACGGCTATGAGAACATTGATTTCATCACCGATATCACTTGGGAGGACCTGC
AGGAGATCGGCATCACCAAGCTGGGACACCAAAAGAAGCTGATGCTGGCGGTGAGGAAACTGGC
AGAGCTGCAAAAGGCAGAATACTCCAAGTATGAGGGGGGACCGCTGCGCCGAAAGGCACCCCAG
TCACTTGAAATGATGGCCATCGAGTCACCACCCCCATCTGAGCCTGCTGCAGCAGAGTGCCAGT
CTCCTAAGATGACCACCTTCCAGGACAGTGAGCTCAGTGGTGAGCTGCAGGCTGCCTTGTCCGG
CCCAGCTGAAGCAGGTGCAGCTGCTGCCGAGAAATCCTCCAACCACCTGCCAGCCACTCCGAGG
ACAACCTCGCGACAGGAGTCCAGCCTGAGTGGACGGGCTCGGCACATGAGCAGCTCTCAGGAGC
TGCTGGGTGATGGGCCTCAGGGGCCGGGCAGTCCTATGTCACGAAGTCAGGAATACCTTCTGGA
TGAGGGTCCAGCTCCTGGCACCCCACCCAAGGAGGTGCGGTCTAGCCGCCATGGCCACAGTGTC
AAGAGGGCCAGTGTGCCCCCAGTGCCTGGCAAGCCACGACAGGTCCTTCCATCCGGTGTCAGCC
ACTTCACGCCCCCACAGACGCCCACCAAAGCTCAGCCAGGCTCCCCTCAGGCCCTTGGGGGACC
TCATGGTCCAGCCACAGCCAAGGTGAAGCCCACCCCACAGCTGCTACCACCAACAGACCGACCC
ATGTCACCCCGTTCCCTGCCTCAGTCACCCACACACCGTGGCTTTGCTTACGTGCTGCCCCAAC
CAGTTGAGGGTGAGGCAGGGCCACCCGCTCCAGGACCTGTGCCCCCACCGGTACCAGCAGCTGT
GCCCACACTATGCTTGCCCCCAGAAGCTGATGTAGAGCCTGGGCGGCCCAAGAAACGTGCCCAC
AGCTTGAATCGCTATGCAGCGTCCGACAGCGAGCCCGAGCGGGATGAGCTGCTGGTGCCTGCTG
CCGCTGGACCCTATGCCACAGTCCAGCGGCGTGTGGGTCGGAGCCATTCAGTGAGGGCTCCTGC
TGGCACTGACAAGAACGTTAACCGCAGCCAGTCCTTTGCTGTGCGGCCACGTAAGAAGGGGCCC
CCACCCCCTCCACCCAAACGCTCCAGCTCAGCCATGGCTAGCGCCAACCTAGCTGATGAGCCGT
CTCCAGATGTTGAGACAGAGGATGGCCGGCTGGGGGTCCGGGCACAACGCCGGCGGGCTAGTGA
TCTCGCTGGCAGTGTGGACACAGGCAGTGCTGGCAGTGTGAAGAGCATCGCAGCCATGTTGGAG
CTGTCTTCCATTGGGGGTGGGGGGCGAGCTATTCGCAGGCCCCCCGAAGGCCACCCCACACCTC
GTCCTGCCAGTCCAGACCCGGGCAGAGTAGCTACCGTGTTGGCCTCTGTAAAGCACAAAGAGGC
CATTGGGCCTGACGGTGAAGTGGTGAACCGGCGCCGTACACTCAGTGGCCCAGTCACTGGACTT
TTGGCCACTGCTCGCCGGGGACCTGGGGAACCTGCAGAGCAGAGTCATTTTATGGAGGATGGCA
CGGCCCGACAACGGCTTCGAGGTCCAGCCAAGGGTGAGGCAGGTGTGGAGGGTCCTCCCCTTGC
CCGGGTAGAGGCCAGCGCCACACTCAAGAGGCGCATCCGGGCCAAGCAGAGCCAACAGGAGAAT
GTCAAGTTCATCCTGACAGAGTCTGACACAGTCAAGCGCAGGCCCAAGGCTAAGGAGCCTGACA
TTGGGCCTGAGCCACCCCCACCACTGTCCGTGTATCAGAATGGCACAGCCACCATCCGCCGACG
GCCAGCCTCAGAGCAGGCTGGGCCCCCAGAGCTGCCCCCTCCTCCTCCACCTGCCGAGCCCCCA
CCCACTGACCTGATGCCACTGCCTCCACTGCCCCTGCCTGATGGCAGTGCACGGAAGCCGGTGA
AGCCACCCGTCTCTCCCAAGCCCATTCTGGCTCAGCCTGTGTCCAAGATCCAGGGCTCACCTAC
ACCTGCCTCCAAGAAGGTGCCACTGCCAGGCCCTGGCAGCCCAGAGGTAAAGCGTGCTCACGGC
ACGCCACCGCCTGTGTCACCCAAGCCTCCACCGCCACCTACAGCGCCTAAGCCAGCCAAGGCTT
TGGCGGGACTGCAGTCCAGCAGCGCCACCCCCTCGCCTGTGCCCTCGCCGGCGCGTCAGCCGCC
AGCAGCCCTCATCAAGCCAGCTAGCTCACCGCCCTCGCAGAGCGCCAGCCCCGCCAAGCCCCCT
TCCCCAGGGGCACCTGCGCTGCAAGTACCCACCAAGCCCCCTCGCGCTGCCGCTTCAGTGGTCT
CCGGACCCCCAGTAGCTTCAGATTGTGCTTCGCCCGGGGACAGTGCTCGGCAGAAGCTGGAAGA
GACTAGCGCGTGTTTGGCTGCAGCACTGCAGGCGGTGGAGGAGAAGATCAGGCAGGAAGACGGA
CAAGGCCCTCGCCCCTCCTCCATCGAGGAGAAGAGCACTGGCAGCATCCTGGAAGACATCGGCA
GCATGTTTGACGACCTGGCCGACCAGCTGGACGCCATGCTGGAGTGAGGCAGCCACCCACGTGG
GCCCACCGTACTCCCCGCACTTTGACCTTTACCTCAGGACAGGCACTTCCAAGCGGTGGGTGGG
GGCCGAGTGGGCGGGGCACGCCCAGCTCTGCACAAGCACAACTCCTACTCCTGGCCCAGGCTGG
TCGTCAGCCCCCTGGCATGGGGGTCGGGGGCGCTCCAAGGGCTCTGAGCAGATGCGCTGCCCGC
TGGTGCCCATTCCTATCTGCTGCTCCCTGTGCAACAACTGCTGGGCCCTACCCTTGCAGGCTTT
GCTCTGCTGGCGGAGGGCTGCCCCTCCCTTGCCCTAGGCAGACTGAGCACCAAGGGAAGATGAG
GGGGGTGGTCCTGTGGCCCTCTCTCCAATCTGGCAGAGCACAGGCCTAGGCCTAGCACAGAACT
GCCCATTGGGGAACCTCTGCCAGCTGCTCTGGCACAGCACAAGGGACAGGGGGGCCAAGGTTGG
GCTCGCCCCACTGCACCCCAGAATATAAGCTATCAAGAGTATTAATTTATTGGGAATGAGCTGA
GGCAAATTTCCCCAGAAAAACAAAAAGATAACTTTAACAAATATATATTTAAAGAGAAGAAATA
TTATTGATTCTATAGAAACCATTTACCAACAGGAAGGTTACAAGTCCAGCTTGAGACTAAAGCT
GTCAGAGGCTGAGGCCACCTGTCTGCCCTTCTCTTTCATCTAGGAGTGGTCTTGCCCCTGGTCA
CGAGCACACCTGGGAGGCACAATCTGGGGGGTGGCTCTGCCCAGAGCGTCTCCTCTGTTCTTCC
AGCTCCCGAGTCTGAAGAATGTGAAGGACGTGCCTTGCTCTCACCGGCTCTCCTCCATGCCACA
CAGGGCTCGGGAGGGCTTCTTCCTTCTGGGTGTGGCCATGCCCTTGGGGTGCTGGTATAAGGGT
ATACCCAGTGTGAACCCTGTGTGGGCGTAAGTGCAAGGGCGTGCATGCCAGCCTAGGGGCAGAT
GTGTGTTTGAGCTGTGTCTGCTCCAGCCTCCCCAAGGCAGCCTCATAAGGCAGCCACCCCGCCC
ACCCTGAATTCCCATGGACGTTCTGCTCATGGTCTGAGGCTGTGTTGTGTAGTACCTCTCACCT
TCTTTTCTTCCCTCCAAAAAATACTGACTGGTCTCCTCTCGTGTTTGCTGATCCACAAGTGTTG
GGCATAACATTGACATTTCTTTAAACCCCCTCTCCCCCCAAAAAAGAAAAGAAACCCAAAACAA
AACCATAATTGTGGTGTAAGCTGGTGGAGGGGCCAACTAAGGTAGTGTGGACACAGGGCCCCTC
CAACTGTCACTCCTGGCGCTTCCTTATCTGAACATGCTGGCCATTTATCAGCCTCCTCTGTGTG
GGCAGCCCAGGCTAGGGCTCTAGGAAGTGGGGAGGGGGGTCTGGACAGGGAGCTGCTGTCAGCT
GTCAATAAACAGCAGAAACAGA

hide sequence

RefSeq Acc Id:

XM_006245895 ⟹ XP_006245957

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,016,780 - 14,037,927 (+)	NCBI
mRatBN7.2	10	13,512,684 - 13,533,380 (+)	NCBI
Rnor_6.0	10	13,853,107 - 13,874,254 (+)	NCBI
Rnor_5.0	10	13,670,657 - 13,691,239 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTGCATTTAGTGATCTCTTCTGAGAGCCTATCACATATCAGAAGACCTAGGCTC
ATTCCCCAAGCCTCATGAGGGACTCTACCATGATCAGAATTCTATGATCCTGGAAAGCCCTGTT
GTACACAGTCCAGGGCTACAAGAAGAGTGGGTTGGTTGTGCATGAGTGAACTGGTTGTGCATAC
ATGAACCCTCACCGAATTCTCTCCACTATATTGCTGGGCTGCTCTCTGCTCCTGCTTGCAAATA
AGGAAGTGGAGGGAGCAGAACCTTACCCAAGACCTGGAGCTCAATCCCTGTGAGTTCATAATGC
TTCAGGCAAAATAAGAGGCCTGGAGCAGCCCTAGCCTTCGGGCAGGGAGGAGGTGGTGTTGGTC
AAGCCAAGAGATCCTGACTGGGAACCTGTGGCTAGGAGATTGCTCAGGTTGGGCTAGACTAGAA
TGGTTCTGAGCAAGGCTGGGCCTTCATTGGTGCTGAGGATGGGAGGTTAAGTTCGTCTTGGTGG
ATATAGACAGTTACAGCCAAGTAGCCGAGAGTGTTGAAGTCAATCTCCCTTCCAGTCTGTCCTC
GAAGGAGAACTGTCATCCTGCATTGTTGTGGAGAGAAGCCAGAGGCTGCTAGGGAAGAAGGTGT
AGTTGGGGGGAGGAGGGGTACGGGTTCCCTGACACCGAATTCATTATTGGGAGATTCCTCTTCG
CAATCTCTCAACACCTCCCACAGGAATCACGGGCCAGAAATGTCTGACAGCCTCTGGAGGGCCG
GCACCGGTGGCACTTGTGCCCGGCTTCCCGCCCGCCCACTGTCTCCGAGTCCCTCCCCCTCAGG
TCTCTCAGCCTGGAGAAACCTCTCCTAGGTTTAGCCTTTCGTCGCCGCCGTGTCCGTGCTCGGT
GGTCAGCACCCCTGCGCACCGTCCTCTGTCCCTGGCGACCGTCCTCGGTTCCCCGCTGTCCGCA
GAGGCCTAGCCTGACCCGCGAACCCAAACGTGGGGAGGGGGCGTCGGGCGTGGGGGGTGGGAGG
GGAAGGGCCAATGCGGGGGCGGAGCCTAGGAGCCGGGCGCGCGGCCGGCGCGGGCTGACGGAGG
TCAGCGGCCGCGGGAGCGGACCCAGGCGTCCGGGAGGCGGCTCAGACGCGGCGCGCCACCGGGT
GCCCGCCGCCGCCGCCGGCTCCCGCCCCTGGGCCGCCCCCCGCCCGTGACGCGCTATCCGTCCC
TCCGCGTCGGAGCCCCAGCCCCAGTTCGAGCCCGAAACCCCAGCCCGAGCCCGAGCCCGAGCCC
GAACCCACGGAGGGCGCTGGGCGGCGGGCGGCGGGCGGCGCAGGGAGCGCGGGCTGGAAAGGAT
GCGATCGCAGACGCCGAGCCGCCGCTGCGTCTGAGCCGCCGAGAGCACCGAGCGCCGCGTCGCT
GCGGGCCCGGCGGCGCCATGGGGAAGGAGCAGGAGCTGGTGCAGGCAGTGAAGGCGGAGGACGT
GGGGACCGCGCAGAGGCTGCTGCAGAGGCCGCGGCCGGGGAAGGCCAAGCTCCTGGGCTCTACC
AAGAAGATCAATGTCAACTTCCAGGACCCAGATGGACCTGTCCTTCACCTGCCCAGCTTCTCAG
CCCTGCACCATGCTGCCCTGAATGGCAACACCGAATTGATCTCTCTGCTGCTGGAGGCTCAGGC
TGCTGTAGACATCAAGGACAACAAAGGCATGCGGCCGCTGCACTACGCGGCCTGGCAGGGCCGG
AAGGAGCCCATGAAGCTGGTGCTGAAGGCAGGCTCAGCAGTGAATGTCCCATCCGACGAGGGCC
ACATACCCCTGCATTTGGCTGCCCAGCATGGTCACTACGATGTGTCAGAGATGCTACTGCAGCA
TCAGTCCAACCCCTGCATGGTAGACAACTCCGGAAAGACACCTCTGGACCTGGCCTGCGAGTTT
GGCCGCGTAGGGGTGGTCCAGCTGCTGCTAAGTAGCAACATGTGTGCGGCCCTGCTGGAGCCCC
GACCAGGGGACACCACTGATCCCAACGGTACCAGTCCCCTGCACCTGGCCGCCAAGAATGGCCA
CATCGACATAATTAGGCTCCTCCTCCAGGCCGGCATCGACATTAACCGCCAGACCAAGTCTGGC
ACAGCCCTTCATGAGGCTGCACTCTGTGGGAAGACAGAAGTGGTCCGGCTACTGCTGGATAGTG
GGATCAATGCCCAGGTGAGGAACACCTACAGCCAGACAGCACTGGACATCGTGCACCAATTTAC
TACATCCCAGGCCAGCAAGGAGATCAAGCAACTGCTTCGAGAGGCTTCAGCGGCTCTCCAGGTC
CGGGCTACAAAGGATTACTGTAACAATTATGATCTGACCAGTCTCAATGTGAAGGCTGGGGACA
TTATCACGGTACTTGAACAGCATCCAGATGGCCGGTGGAAAGGCTGTATCCATGACAACCGGAC
AGGCAATGACAGGGTGGGCTACTTCCCATCCTCGCTGGGGGAGGCTATTGTCAAGCGAGCCGGT
TCCCGGACAGGCAGCGAGCCAAGCCCACCCCAGGGAGGTGGCTCACTGGGTCCCTCCGCACCCC
CGGAGGAGATCTGGGTGCTGAGGAAGCCTTTTGCAGGTGGAGATCGCAGTGGCAGCTTGAGCAA
TGTGGCTGGGGGCAGGAGTACTGGGGGCCATGCCCTGCATGCAGGCGCTGAAGGGGTTAAGCTC
CTGGCAACTGTGCTTTCCCAGAAGTCAGTCTCCGAGTCCAGCCCAGGAGATAGCCCGGTCAAGC
CTCCTGAGGGCTCTTCAGGTGCTGCCCGGTCCCAGCCTCCAGCAGCCCATGCTGGGCAGGTATA
TGGGGAGCAGCCACCCAAGAAGCTGGAATCGTCCTCGGCCTCTGAGGGCAAGAGTGCTGAGGCA
GTCAGTCAGTGGCTTGCCACATTCCAGCTACAGCTCTATGCCCCCAACTTCACCAGTGCTGGCT
ATGACCTGCCCACCATCAGTCGCATGACCCCTGAGGACCTCACAGCCATTGGTGTTACCAAGCC
AGGCCACCGTAAGAAGATTACGGCAGAGATCAGCGGCCTGAACATCCCTGACTGCCTGCCTGAA
CACAAACCCGCTAACCTGGCTGTGTGGCTGTCAATGATTGGTCTGGCCCAGTATTACAAGGTGC
TGGTGGACAACGGCTATGAGAACATTGATTTCATCACCGATATCACTTGGGAGGACCTGCAGGA
GATCGGCATCACCAAGCTGGGACACCAAAAGAAGCTGATGCTGGCGGTGAGGAAACTGGCAGAG
CTGCAAAAGGCAGAATACTCCAAGTATGAGGGGGGACCGCTGCGCCGAAAGGCACCCCAGTCAC
TTGAAATGATGGCCATCGAGTCACCACCCCCATCTGAGCCTGCTGCAGCAGAGTGCCAGTCTCC
TAAGATGACCACCTTCCAGGACAGTGAGCTCAGTGGTGAGCTGCAGGCTGCCTTGTCCGGCCCA
GCTGAAGCAGGTGCAGCTGCTGCCGAGAAATCCTCCAACCACCTGCCAGCCACTCCGAGGACAA
CCTCGCGACAGGAGTCCAGCCTGAGTGGACGGGCTCGGCACATGAGCAGCTCTCAGGAGCTGCT
GGGTGATGGGCCTCAGGGGCCGGGCAGTCCTATGTCACGAAGTCAGGAATACCTTCTGGATGAG
GGTCCAGCTCCTGGCACCCCACCCAAGGAGGTGCGGTCTAGCCGCCATGGCCACAGTGTCAAGA
GGGCCAGTGTGCCCCCAGTGCCTGGCAAGCCACGACAGGTCCTTCCATCCGGTGTCAGCCACTT
CACGCCCCCACAGACGCCCACCAAAGCTCAGCCAGGCTCCCCTCAGGCCCTTGGGGGACCTCAT
GGTCCAGCCACAGCCAAGGTGAAGCCCACCCCACAGCTGCTACCACCAACAGACCGACCCATGT
CACCCCGTTCCCTGCCTCAGTCACCCACACACCGTGGCTTTGCTTACGTGCTGCCCCAACCAGT
TGAGGGTGAGGCAGGGCCACCCGCTCCAGGACCTGTGCCCCCACCGGTACCAGCAGCTGTGCCC
ACACTATGCTTGCCCCCAGAAGCTGATGTAGAGCCTGGGCGGCCCAAGAAACGTGCCCACAGCT
TGAATCGCTATGCAGCGTCCGACAGCGAGCCCGAGCGGGATGAGCTGCTGGTGCCTGCTGCCGC
TGGACCCTATGCCACAGTCCAGCGGCGTGTGGGTCGGAGCCATTCAGTGAGGGCTCCTGCTGGC
ACTGACAAGAACGTTAACCGCAGCCAGTCCTTTGCTGTGCGGCCACGTAAGAAGGGGCCCCCAC
CCCCTCCACCCAAACGCTCCAGCTCAGCCATGGCTAGCGCCAACCTAGCTGATGAGCCGTCTCC
AGATGTTGAGACAGAGGATGGCCGGCTGGGGGTCCGGGCACAACGCCGGCGGGCTAGTGATCTC
GCTGGCAGTGTGGACACAGGCAGTGCTGGCAGTGTGAAGAGCATCGCAGCCATGTTGGAGCTGT
CTTCCATTGGGGGTGGGGGGCGAGCTATTCGCAGGCCCCCCGAAGGCCACCCCACACCTCGTCC
TGCCAGTCCAGACCCGGGCAGAGTAGCTACCGTGTTGGCCTCTGTAAAGCACAAAGAGGCCATT
GGGCCTGACGGTGAAGTGGTGAACCGGCGCCGTACACTCAGTGGCCCAGTCACTGGACTTTTGG
CCACTGCTCGCCGGGGACCTGGGGAACCTGCAGAGCAGAGTCATTTTATGGAGGATGGCACGGC
CCGACAACGGCTTCGAGGTCCAGCCAAGGGTGAGGCAGGTGTGGAGGGTCCTCCCCTTGCCCGG
GTAGAGGCCAGCGCCACACTCAAGAGGCGCATCCGGGCCAAGCAGAGCCAACAGGAGAATGTCA
AGTTCATCCTGACAGAGTCTGACACAGTCAAGCGCAGGCCCAAGGCTAAGGAGCCTGACATTGG
GCCTGAGCCACCCCCACCACTGTCCGTGTATCAGAATGGCACAGCCACCATCCGCCGACGGCCA
GCCTCAGAGCAGGCTGGGCCCCCAGAGCTGCCCCCTCCTCCTCCACCTGCCGAGCCCCCACCCA
CTGACCTGATGCCACTGCCTCCACTGCCCCTGCCTGATGGCAGTGCACGGAAGCCGGTGAAGCC
ACCCGTCTCTCCCAAGCCCATTCTGGCTCAGCCTGTGTCCAAGATCCAGGGCTCACCTACACCT
GCCTCCAAGAAGGTGCCACTGCCAGGCCCTGGCAGCCCAGAGGTAAAGCGTGCTCACGGCACGC
CACCGCCTGTGTCACCCAAGCCTCCACCGCCACCTACAGCGCCTAAGCCAGCCAAGGCTTTGGC
GGGACTGCAGTCCAGCAGCGCCACCCCCTCGCCTGTGCCCTCGCCGGCGCGTCAGCCGCCAGCA
GCCCTCATCAAGCCAGCTAGCTCACCGCCCTCGCAGAGCGCCAGCCCCGCCAAGCCCCCTTCCC
CAGGGGCACCTGCGCTGCAAGTACCCACCAAGCCCCCTCGCGCTGCCGCTTCAGTGGTCTCCGG
ACCCCCAGTAGCTTCAGATTGTGCTTCGCCCGGGGACAGTGCTCGGCAGAAGCTGGAAGAGACT
AGCGCGTGTTTGGCTGCAGCACTGCAGGCGGTGGAGGAGAAGATCAGGCAGGAAGACGGACAAG
GCCCTCGCCCCTCCTCCATCGAGGAGAAGAGCACTGGCAGCATCCTGGAAGACATCGGCAGCAT
GTTTGACGACCTGGCCGACCAGCTGGACGCCATGCTGGAGTGAGGCAGCCACCCACGTGGGCCC
ACCGTACTCCCCGCACTTTGACCTTTACCTCAGGACAGGCACTTCCAAGCGGTGGGTGGGGGCC
GAGTGGGCGGGGCACGCCCAGCTCTGCACAAGCACAACTCCTACTCCTGGCCCAGGCTGGTCGT
CAGCCCCCTGGCATGGGGGTCGGGGGCGCTCCAAGGGCTCTGAGCAGATGCGCTGCCCGCTGGT
GCCCATTCCTATCTGCTGCTCCCTGTGCAACAACTGCTGGGCCCTACCCTTGCAGGCTTTGCTC
TGCTGGCGGAGGGCTGCCCCTCCCTTGCCCTAGGCAGACTGAGCACCAAGGGAAGATGAGGGGG
GTGGTCCTGTGGCCCTCTCTCCAATCTGGCAGAGCACAGGCCTAGGCCTAGCACAGAACTGCCC
ATTGGGGAACCTCTGCCAGCTGCTCTGGCACAGCACAAGGGACAGGGGGGCCAAGGTTGGGCTC
GCCCCACTGCACCCCAGAATATAAGCTATCAAGAGTATTAATTTATTGGGAATGAGCTGAGGCA
AATTTCCCCAGAAAAACAAAAAGATAACTTTAACAAATATATATTTAAAGAGAAGAAATATTAT
TGATTCTATAGAAACCATTTACCAACAGGAAGGTTACAAGTCCAGCTTGAGACTAAAGCTGTCA
GAGGCTGAGGCCACCTGTCTGCCCTTCTCTTTCATCTAGGAGTGGTCTTGCCCCTGGTCACGAG
CACACCTGGGAGGCACAATCTGGGGGGTGGCTCTGCCCAGAGCGTCTCCTCTGTTCTTCCAGCT
CCCGAGTCTGAAGAATGTGAAGGACGTGCCTTGCTCTCACCGGCTCTCCTCCATGCCACACAGG
GCTCGGGAGGGCTTCTTCCTTCTGGGTGTGGCCATGCCCTTGGGGTGCTGGTATAAGGGTATAC
CCAGTGTGAACCCTGTGTGGGCGTAAGTGCAAGGGCGTGCATGCCAGCCTAGGGGCAGATGTGT
GTTTGAGCTGTGTCTGCTCCAGCCTCCCCAAGGCAGCCTCATAAGGCAGCCACCCCGCCCACCC
TGAATTCCCATGGACGTTCTGCTCATGGTCTGAGGCTGTGTTGTGTAGTACCTCTCACCTTCTT
TTCTTCCCTCCAAAAAATACTGACTGGTCTCCTCTCGTGTTTGCTGATCCACAAGTGTTGGGCA
TAACATTGACATTTCTTTAAACCCCCTCTCCCCCCAAAAAAGAAAAGAAACCCAAAACAAAACC
ATAATTGTGGTGTAAGCTGGTGGAGGGGCCAACTAAGGTAGTGTGGACACAGGGCCCCTCCAAC
TGTCACTCCTGGCGCTTCCTTATCTGAACATGCTGGCCATTTATCAGCCTCCTCTGTGTGGGCA
GCCCAGGCTAGGGCTCTAGGAAGTGGGGAGGGGGGTCTGGACAGGGAGCTGCTGTCAGCTGTCA
ATAAACAGCAGAAACAGA

hide sequence

RefSeq Acc Id:

XM_006245896 ⟹ XP_006245958

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,016,780 - 14,037,927 (+)	NCBI
mRatBN7.2	10	13,512,686 - 13,533,380 (+)	NCBI
Rnor_6.0	10	13,853,107 - 13,874,254 (+)	NCBI
Rnor_5.0	10	13,670,657 - 13,691,239 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTGCATTTAGTGATCTCTTCTGAGAGCCTATCACATATCAGAAGACCTAGGCTC
ATTCCCCAAGCCTCATGAGGGACTCTACCATGATCAGAATTCTATGATCCTGGAAAGCCCTGTT
GTACACAGTCCAGGGCTACAAGAAGAGTGGGTTGGTTGTGCATGAGTGAACTGGTTGTGCATAC
ATGAACCCTCACCGAATTCTCTCCACTATATTGCTGGGCTGCTCTCTGCTCCTGCTTGCAAATA
AGGAAGTGGAGGGAGCAGAACCTTACCCAAGACCTGGAGCTCAATCCCTGTGAGTTCATAATGC
TTCAGGCAAAATAAGAGGCCTGGAGCAGCCCTAGCCTTCGGGCAGGGAGGAGGTGGTGTTGGTC
AAGCCAAGAGATCCTGACTGGGAACCTGTGGCTAGGAGATTGCTCAGGTTGGGCTAGACTAGAA
TGGTTCTGAGCAAGGCTGGGCCTTCATTGGTGCTGAGGATGGGAGGTTAAGTTCGTCTTGGTGG
ATATAGACAGTTACAGCCAAGTAGCCGAGAGTGTTGAAGTCAATCTCCCTTCCAGTCTGTCCTC
GAAGGAGAACTGTCATCCTGCATTGTTGTGGAGAGAAGCCAGAGGCTGCTAGGGAAGAAGGTGT
AGTTGGGGGGAGGAGGGGTACGGGTTCCCTGACACCGAATTCATTATTGGGAGATTCCTCTTCG
CAATCTCTCAACACCTCCCACAGGAATCACGGGCCAGAAATGTCTGACAGCCTCTGGAGGGCCG
GCACCGGTGGCACTTGTGCCCGGCTTCCCGCCCGCCCACTGTCTCCGAGTCCCTCCCCCTCAGG
TCTCTCAGCCTGGAGAAACCTCTCCTAGGTTTAGCCTTTCGTCGCCGCCGTGTCCGTGCTCGGT
GGTCAGCACCCCTGCGCACCGTCCTCTGTCCCTGGCGACCGTCCTCGGTTCCCCGCTGTCCGCA
GAGGCCTAGCCTGACCCGCGAACCCAAACGTGGGGAGGGGGCGTCGGGCGTGGGGGGTGGGAGG
GGAAGGGCCAATGCGGGGGCGGAGCCTAGGAGCCGGGCGCGCGGCCGGCGCGGGCTGACGGAGG
TCAGCGGCCGCGGGAGCGGACCCAGGCGTCCGGGAGGCGGCTCAGACGCGGCGCGCCACCGGGT
GCCCGCCGCCGCCGCCGGCTCCCGCCCCTGGGCCGCCCCCCGCCCGTGACGCGCTATCCGTCCC
TCCGCGTCGGAGCCCCAGCCCCAGTTCGAGCCCGAAACCCCAGCCCGAGCCCGAGCCCGAGCCC
GAACCCACGGAGGGCGCTGGGCGGCGGGCGGCGGGCGGCGCAGGGAGCGCGGGCTGGAAAGGAT
GCGATCGCAGACGCCGAGCCGCCGCTGCGTCTGAGCCGCCGAGAGCACCGAGCGCCGCGTCGCT
GCGGGCCCGGCGGCGCCATGGGGAAGGAGCAGGAGCTGGTGCAGGCAGTGAAGGCGGAGGACGT
GGGGACCGCGCAGAGGCTGCTGCAGAGGCCGCGGCCGGGGAAGGCCAAGCTCCTGGGCTCTACC
AAGAAGATCAATGTCAACTTCCAGGACCCAGATGGACCTGTCCTTCACCTGCCCAGCTTCTCAG
CCCTGCACCATGCTGCCCTGAATGGCAACACCGAATTGATCTCTCTGCTGCTGGAGGCTCAGGC
TGCTGTAGACATCAAGGACAACAAAGGCATGCGGCCGCTGCACTACGCGGCCTGGCAGGGCCGG
AAGGAGCCCATGAAGCTGGTGCTGAAGGCAGGCTCAGCAGTGAATGTCCCATCCGACGAGGGCC
ACATACCCCTGCATTTGGCTGCCCAGCATGGTCACTACGATGTGTCAGAGATGCTACTGCAGCA
TCAGTCCAACCCCTGCATGGTAGACAACTCCGGAAAGACACCTCTGGACCTGGCCTGCGAGTTT
GGCCGCGTAGGGGTGGTCCAGCTGCTGCTAAGTAGCAACATGTGTGCGGCCCTGCTGGAGCCCC
GACCAGGGGACACCACTGATCCCAACGGTACCAGTCCCCTGCACCTGGCCGCCAAGAATGGCCA
CATCGACATAATTAGGCTCCTCCTCCAGGCCGGCATCGACATTAACCGCCAGACCAAGTCTGGC
ACAGCCCTTCATGAGGCTGCACTCTGTGGGAAGACAGAAGTGGTCCGGCTACTGCTGGATAGTG
GGATCAATGCCCAGGTGAGGAACACCTACAGCCAGACAGCACTGGACATCGTGCACCAATTTAC
TACATCCCAGGCCAGCAAGGAGATCAAGCAACTGCTTCGAGAGGCTTCAGCGGCTCTCCAGGTC
CGGGCTACAAAGGATTACTGTAACAATTATGATCTGACCAGTCTCAATGTGAAGGCTGGGGACA
TTATCACGGTACTTGAACAGCATCCAGATGGCCGGTGGAAAGGCTGTATCCATGACAACCGGAC
AGGCAATGACAGGGTGGGCTACTTCCCATCCTCGCTGGGGGAGGCTATTGTCAAGCGAGCCGGT
TCCCGGACAGGCAGCGAGCCAAGCCCACCCCAGGGAGGTGGCTCACTGGGTCCCTCCGCACCCC
CGGAGGAGATCTGGGTGCTGAGGAAGCCTTTTGCAGGTGGAGATCGCAGTGGCAGCTTGAGCAA
TGTGGCTGGGGGCAGGAGTACTGGGGGCCATGCCCTGCATGCAGGCGCTGAAGGGGTTAAGCTC
CTGGCAACTGTGCTTTCCCAGAAGTCAGTCTCCGAGTCCAGCCCAGGAGATAGCCCGGTCAAGC
CTCCTGAGGGCTCTTCAGGTGCTGCCCGGTCCCAGCCTCCAGCAGCCCATGCTGGGCAGGTATA
TGGGGAGCAGCCACCCAAGAAGCTGGAATCGTCCTCGGCCTCTGAGGGCAAGGCTAACCTGGCT
GTGTGGCTGTCAATGATTGGTCTGGCCCAGTATTACAAGGTGCTGGTGGACAACGGCTATGAGA
ACATTGATTTCATCACCGATATCACTTGGGAGGACCTGCAGGAGATCGGCATCACCAAGCTGGG
ACACCAAAAGAAGCTGATGCTGGCGGTGAGGAAACTGGCAGAGCTGCAAAAGGCAGAATACTCC
AAGTATGAGGGGGGACCGCTGCGCCGAAAGGCACCCCAGTCACTTGAAATGATGGCCATCGAGT
CACCACCCCCATCTGAGCCTGCTGCAGCAGAGTGCCAGTCTCCTAAGATGACCACCTTCCAGGA
CAGTGAGCTCAGTGGTGAGCTGCAGGCTGCCTTGTCCGGCCCAGCTGAAGCAGGTGCAGCTGCT
GCCGAGAAATCCTCCAACCACCTGCCAGCCACTCCGAGGACAACCTCGCGACAGGAGTCCAGCC
TGAGTGGACGGGCTCGGCACATGAGCAGCTCTCAGGAGCTGCTGGGTGATGGGCCTCAGGGGCC
GGGCAGTCCTATGTCACGAAGTCAGGAATACCTTCTGGATGAGGGTCCAGCTCCTGGCACCCCA
CCCAAGGAGGTGCGGTCTAGCCGCCATGGCCACAGTGTCAAGAGGGCCAGTGTGCCCCCAGTGC
CTGGCAAGCCACGACAGGTCCTTCCATCCGGTGTCAGCCACTTCACGCCCCCACAGACGCCCAC
CAAAGCTCAGCCAGGCTCCCCTCAGGCCCTTGGGGGACCTCATGGTCCAGCCACAGCCAAGGTG
AAGCCCACCCCACAGCTGCTACCACCAACAGACCGACCCATGTCACCCCGTTCCCTGCCTCAGT
CACCCACACACCGTGGCTTTGCTTACGTGCTGCCCCAACCAGTTGAGGGTGAGGCAGGGCCACC
CGCTCCAGGACCTGTGCCCCCACCGGTACCAGCAGCTGTGCCCACACTATGCTTGCCCCCAGAA
GCTGATGTAGAGCCTGGGCGGCCCAAGAAACGTGCCCACAGCTTGAATCGCTATGCAGCGTCCG
ACAGCGAGCCCGAGCGGGATGAGCTGCTGGTGCCTGCTGCCGCTGGACCCTATGCCACAGTCCA
GCGGCGTGTGGGTCGGAGCCATTCAGTGAGGGCTCCTGCTGGCACTGACAAGAACGTTAACCGC
AGCCAGTCCTTTGCTGTGCGGCCACGTAAGAAGGGGCCCCCACCCCCTCCACCCAAACGCTCCA
GCTCAGCCATGGCTAGCGCCAACCTAGCTGATGAGCCGTCTCCAGATGTTGAGACAGAGGATGG
CCGGCTGGGGGTCCGGGCACAACGCCGGCGGGCTAGTGATCTCGCTGGCAGTGTGGACACAGGC
AGTGCTGGCAGTGTGAAGAGCATCGCAGCCATGTTGGAGCTGTCTTCCATTGGGGGTGGGGGGC
GAGCTATTCGCAGGCCCCCCGAAGGCCACCCCACACCTCGTCCTGCCAGTCCAGACCCGGGCAG
AGTAGCTACCGTGTTGGCCTCTGTAAAGCACAAAGAGGCCATTGGGCCTGACGGTGAAGTGGTG
AACCGGCGCCGTACACTCAGTGGCCCAGTCACTGGACTTTTGGCCACTGCTCGCCGGGGACCTG
GGGAACCTGCAGAGCAGAGTCATTTTATGGAGGATGGCACGGCCCGACAACGGCTTCGAGGTCC
AGCCAAGGGTGAGGCAGGTGTGGAGGGTCCTCCCCTTGCCCGGGTAGAGGCCAGCGCCACACTC
AAGAGGCGCATCCGGGCCAAGCAGAGCCAACAGGAGAATGTCAAGTTCATCCTGACAGAGTCTG
ACACAGTCAAGCGCAGGCCCAAGGCTAAGGAGCCTGACATTGGGCCTGAGCCACCCCCACCACT
GTCCGTGTATCAGAATGGCACAGCCACCATCCGCCGACGGCCAGCCTCAGAGCAGGCTGGGCCC
CCAGAGCTGCCCCCTCCTCCTCCACCTGCCGAGCCCCCACCCACTGACCTGATGCCACTGCCTC
CACTGCCCCTGCCTGATGGCAGTGCACGGAAGCCGGTGAAGCCACCCGTCTCTCCCAAGCCCAT
TCTGGCTCAGCCTGTGTCCAAGATCCAGGGCTCACCTACACCTGCCTCCAAGAAGGTGCCACTG
CCAGGCCCTGGCAGCCCAGAGGTAAAGCGTGCTCACGGCACGCCACCGCCTGTGTCACCCAAGC
CTCCACCGCCACCTACAGCGCCTAAGCCAGCCAAGGCTTTGGCGGGACTGCAGTCCAGCAGCGC
CACCCCCTCGCCTGTGCCCTCGCCGGCGCGTCAGCCGCCAGCAGCCCTCATCAAGCCAGCTAGC
TCACCGCCCTCGCAGAGCGCCAGCCCCGCCAAGCCCCCTTCCCCAGGGGCACCTGCGCTGCAAG
TACCCACCAAGCCCCCTCGCGCTGCCGCTTCAGTGGTCTCCGGACCCCCAGTAGCTTCAGATTG
TGCTTCGCCCGGGGACAGTGCTCGGCAGAAGCTGGAAGAGACTAGCGCGTGTTTGGCTGCAGCA
CTGCAGGCGGTGGAGGAGAAGATCAGGCAGGAAGACGGACAAGGCCCTCGCCCCTCCTCCATCG
AGGAGAAGAGCACTGGCAGCATCCTGGAAGACATCGGCAGCATGTTTGACGACCTGGCCGACCA
GCTGGACGCCATGCTGGAGTGAGGCAGCCACCCACGTGGGCCCACCGTACTCCCCGCACTTTGA
CCTTTACCTCAGGACAGGCACTTCCAAGCGGTGGGTGGGGGCCGAGTGGGCGGGGCACGCCCAG
CTCTGCACAAGCACAACTCCTACTCCTGGCCCAGGCTGGTCGTCAGCCCCCTGGCATGGGGGTC
GGGGGCGCTCCAAGGGCTCTGAGCAGATGCGCTGCCCGCTGGTGCCCATTCCTATCTGCTGCTC
CCTGTGCAACAACTGCTGGGCCCTACCCTTGCAGGCTTTGCTCTGCTGGCGGAGGGCTGCCCCT
CCCTTGCCCTAGGCAGACTGAGCACCAAGGGAAGATGAGGGGGGTGGTCCTGTGGCCCTCTCTC
CAATCTGGCAGAGCACAGGCCTAGGCCTAGCACAGAACTGCCCATTGGGGAACCTCTGCCAGCT
GCTCTGGCACAGCACAAGGGACAGGGGGGCCAAGGTTGGGCTCGCCCCACTGCACCCCAGAATA
TAAGCTATCAAGAGTATTAATTTATTGGGAATGAGCTGAGGCAAATTTCCCCAGAAAAACAAAA
AGATAACTTTAACAAATATATATTTAAAGAGAAGAAATATTATTGATTCTATAGAAACCATTTA
CCAACAGGAAGGTTACAAGTCCAGCTTGAGACTAAAGCTGTCAGAGGCTGAGGCCACCTGTCTG
CCCTTCTCTTTCATCTAGGAGTGGTCTTGCCCCTGGTCACGAGCACACCTGGGAGGCACAATCT
GGGGGGTGGCTCTGCCCAGAGCGTCTCCTCTGTTCTTCCAGCTCCCGAGTCTGAAGAATGTGAA
GGACGTGCCTTGCTCTCACCGGCTCTCCTCCATGCCACACAGGGCTCGGGAGGGCTTCTTCCTT
CTGGGTGTGGCCATGCCCTTGGGGTGCTGGTATAAGGGTATACCCAGTGTGAACCCTGTGTGGG
CGTAAGTGCAAGGGCGTGCATGCCAGCCTAGGGGCAGATGTGTGTTTGAGCTGTGTCTGCTCCA
GCCTCCCCAAGGCAGCCTCATAAGGCAGCCACCCCGCCCACCCTGAATTCCCATGGACGTTCTG
CTCATGGTCTGAGGCTGTGTTGTGTAGTACCTCTCACCTTCTTTTCTTCCCTCCAAAAAATACT
GACTGGTCTCCTCTCGTGTTTGCTGATCCACAAGTGTTGGGCATAACATTGACATTTCTTTAAA
CCCCCTCTCCCCCCAAAAAAGAAAAGAAACCCAAAACAAAACCATAATTGTGGTGTAAGCTGGT
GGAGGGGCCAACTAAGGTAGTGTGGACACAGGGCCCCTCCAACTGTCACTCCTGGCGCTTCCTT
ATCTGAACATGCTGGCCATTTATCAGCCTCCTCTGTGTGGGCAGCCCAGGCTAGGGCTCTAGGA
AGTGGGGAGGGGGGTCTGGACAGGGAGCTGCTGTCAGCTGTCAATAAACAGCAGAAACAGA

hide sequence

RefSeq Acc Id:

XM_006245897 ⟹ XP_006245959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,016,780 - 14,037,927 (+)	NCBI
mRatBN7.2	10	13,512,695 - 13,533,380 (+)	NCBI
Rnor_6.0	10	13,853,107 - 13,874,254 (+)	NCBI
Rnor_5.0	10	13,670,657 - 13,691,239 (+)	NCBI

Sequence:

show sequence

TTTTTTTTTTTTGCATTTAGTGATCTCTTCTGAGAGCCTATCACATATCAGAAGACCTAGGCTC
ATTCCCCAAGCCTCATGAGGGACTCTACCATGATCAGAATTCTATGATCCTGGAAAGCCCTGTT
GTACACAGTCCAGGGCTACAAGAAGAGTGGGTTGGTTGTGCATGAGTGAACTGGTTGTGCATAC
ATGAACCCTCACCGAATTCTCTCCACTATATTGCTGGGCTGCTCTCTGCTCCTGCTTGCAAATA
AGGAAGTGGAGGGAGCAGAACCTTACCCAAGACCTGGAGCTCAATCCCTGTGAGTTCATAATGC
TTCAGGCAAAATAAGAGGCCTGGAGCAGCCCTAGCCTTCGGGCAGGGAGGAGGTGGTGTTGGTC
AAGCCAAGAGATCCTGACTGGGAACCTGTGGCTAGGAGATTGCTCAGGTTGGGCTAGACTAGAA
TGGTTCTGAGCAAGGCTGGGCCTTCATTGGTGCTGAGGATGGGAGGTTAAGTTCGTCTTGGTGG
ATATAGACAGTTACAGCCAAGTAGCCGAGAGTGTTGAAGTCAATCTCCCTTCCAGTCTGTCCTC
GAAGGAGAACTGTCATCCTGCATTGTTGTGGAGAGAAGCCAGAGGCTGCTAGGGAAGAAGGTGT
AGTTGGGGGGAGGAGGGGTACGGGTTCCCTGACACCGAATTCATTATTGGGAGATTCCTCTTCG
CAATCTCTCAACACCTCCCACAGGAATCACGGGCCAGAAATGTCTGACAGCCTCTGGAGGGCCG
GCACCGGTGGCACTTGTGCCCGGCTTCCCGCCCGCCCACTGTCTCCGAGTCCCTCCCCCTCAGG
TCTCTCAGCCTGGAGAAACCTCTCCTAGGTTTAGCCTTTCGTCGCCGCCGTGTCCGTGCTCGGT
GGTCAGCACCCCTGCGCACCGTCCTCTGTCCCTGGCGACCGTCCTCGGTTCCCCGCTGTCCGCA
GAGGCCTAGCCTGACCCGCGAACCCAAACGTGGGGAGGGGGCGTCGGGCGTGGGGGGTGGGAGG
GGAAGGGCCAATGCGGGGGCGGAGCCTAGGAGCCGGGCGCGCGGCCGGCGCGGGCTGACGGAGG
TCAGCGGCCGCGGGAGCGGACCCAGGCGTCCGGGAGGCGGCTCAGACGCGGCGCGCCACCGGGT
GCCCGCCGCCGCCGCCGGCTCCCGCCCCTGGGCCGCCCCCCGCCCGTGACGCGCTATCCGTCCC
TCCGCGTCGGAGCCCCAGCCCCAGTTCGAGCCCGAAACCCCAGCCCGAGCCCGAGCCCGAGCCC
GAACCCACGGAGGGCGCTGGGCGGCGGGCGGCGGGCGGCGCAGGGAGCGCGGGCTGGAAAGGAT
GCGATCGCAGACGCCGAGCCGCCGCTGCGTCTGAGCCGCCGAGAGCACCGAGCGCCGCGTCGCT
GCGGGCCCGGCGGCGCCATGGGGAAGGAGCAGGAGCTGGTGCAGGCAGTGAAGGCGGAGGACGT
GGGGACCGCGCAGAGGCTGCTGCAGAGGCCGCGGCCGGGGAAGGCCAAGCTCCTGGGCTCTACC
AAGAAGATCAATGTCAACTTCCAGGACCCAGATGGCTTCTCAGCCCTGCACCATGCTGCCCTGA
ATGGCAACACCGAATTGATCTCTCTGCTGCTGGAGGCTCAGGCTGCTGTAGACATCAAGGACAA
CAAAGGCATGCGGCCGCTGCACTACGCGGCCTGGCAGGGCCGGAAGGAGCCCATGAAGCTGGTG
CTGAAGGCAGGCTCAGCAGTGAATGTCCCATCCGACGAGGGCCACATACCCCTGCATTTGGCTG
CCCAGCATGGTCACTACGATGTGTCAGAGATGCTACTGCAGCATCAGTCCAACCCCTGCATGGT
AGACAACTCCGGAAAGACACCTCTGGACCTGGCCTGCGAGTTTGGCCGCGTAGGGGTGGTCCAG
CTGCTGCTAAGTAGCAACATGTGTGCGGCCCTGCTGGAGCCCCGACCAGGGGACACCACTGATC
CCAACGGTACCAGTCCCCTGCACCTGGCCGCCAAGAATGGCCACATCGACATAATTAGGCTCCT
CCTCCAGGCCGGCATCGACATTAACCGCCAGACCAAGTCTGGCACAGCCCTTCATGAGGCTGCA
CTCTGTGGGAAGACAGAAGTGGTCCGGCTACTGCTGGATAGTGGGATCAATGCCCAGGTGAGGA
ACACCTACAGCCAGACAGCACTGGACATCGTGCACCAATTTACTACATCCCAGGCCAGCAAGGA
GATCAAGCAACTGCTTCGAGAGGCTTCAGCGGCTCTCCAGGTCCGGGCTACAAAGGATTACTGT
AACAATTATGATCTGACCAGTCTCAATGTGAAGGCTGGGGACATTATCACGGTACTTGAACAGC
ATCCAGATGGCCGGTGGAAAGGCTGTATCCATGACAACCGGACAGGCAATGACAGGGTGGGCTA
CTTCCCATCCTCGCTGGGGGAGGCTATTGTCAAGCGAGCCGGTTCCCGGACAGGCAGCGAGCCA
AGCCCACCCCAGGGAGGTGGCTCACTGGGTCCCTCCGCACCCCCGGAGGAGATCTGGGTGCTGA
GGAAGCCTTTTGCAGGTGGAGATCGCAGTGGCAGCTTGAGCAATGTGGCTGGGGGCAGGAGTAC
TGGGGGCCATGCCCTGCATGCAGGCGCTGAAGGGGTTAAGCTCCTGGCAACTGTGCTTTCCCAG
AAGTCAGTCTCCGAGTCCAGCCCAGGAGATAGCCCGGTCAAGCCTCCTGAGGGCTCTTCAGGTG
CTGCCCGGTCCCAGCCTCCAGCAGCCCATGCTGGGCAGGTATATGGGGAGCAGCCACCCAAGAA
GCTGGAATCGTCCTCGGCCTCTGAGGGCAAGGCTAACCTGGCTGTGTGGCTGTCAATGATTGGT
CTGGCCCAGTATTACAAGGTGCTGGTGGACAACGGCTATGAGAACATTGATTTCATCACCGATA
TCACTTGGGAGGACCTGCAGGAGATCGGCATCACCAAGCTGGGACACCAAAAGAAGCTGATGCT
GGCGGTGAGGAAACTGGCAGAGCTGCAAAAGGCAGAATACTCCAAGTATGAGGGGGGACCGCTG
CGCCGAAAGGCACCCCAGTCACTTGAAATGATGGCCATCGAGTCACCACCCCCATCTGAGCCTG
CTGCAGCAGAGTGCCAGTCTCCTAAGATGACCACCTTCCAGGACAGTGAGCTCAGTGGTGAGCT
GCAGGCTGCCTTGTCCGGCCCAGCTGAAGCAGGTGCAGCTGCTGCCGAGAAATCCTCCAACCAC
CTGCCAGCCACTCCGAGGACAACCTCGCGACAGGAGTCCAGCCTGAGTGGACGGGCTCGGCACA
TGAGCAGCTCTCAGGAGCTGCTGGGTGATGGGCCTCAGGGGCCGGGCAGTCCTATGTCACGAAG
TCAGGAATACCTTCTGGATGAGGGTCCAGCTCCTGGCACCCCACCCAAGGAGGTGCGGTCTAGC
CGCCATGGCCACAGTGTCAAGAGGGCCAGTGTGCCCCCAGTGCCTGGCAAGCCACGACAGGTCC
TTCCATCCGGTGTCAGCCACTTCACGCCCCCACAGACGCCCACCAAAGCTCAGCCAGGCTCCCC
TCAGGCCCTTGGGGGACCTCATGGTCCAGCCACAGCCAAGGTGAAGCCCACCCCACAGCTGCTA
CCACCAACAGACCGACCCATGTCACCCCGTTCCCTGCCTCAGTCACCCACACACCGTGGCTTTG
CTTACGTGCTGCCCCAACCAGTTGAGGGTGAGGCAGGGCCACCCGCTCCAGGACCTGTGCCCCC
ACCGGTACCAGCAGCTGTGCCCACACTATGCTTGCCCCCAGAAGCTGATGTAGAGCCTGGGCGG
CCCAAGAAACGTGCCCACAGCTTGAATCGCTATGCAGCGTCCGACAGCGAGCCCGAGCGGGATG
AGCTGCTGGTGCCTGCTGCCGCTGGACCCTATGCCACAGTCCAGCGGCGTGTGGGTCGGAGCCA
TTCAGTGAGGGCTCCTGCTGGCACTGACAAGAACGTTAACCGCAGCCAGTCCTTTGCTGTGCGG
CCACGTAAGAAGGGGCCCCCACCCCCTCCACCCAAACGCTCCAGCTCAGCCATGGCTAGCGCCA
ACCTAGCTGATGAGCCGTCTCCAGATGTTGAGACAGAGGATGGCCGGCTGGGGGTCCGGGCACA
ACGCCGGCGGGCTAGTGATCTCGCTGGCAGTGTGGACACAGGCAGTGCTGGCAGTGTGAAGAGC
ATCGCAGCCATGTTGGAGCTGTCTTCCATTGGGGGTGGGGGGCGAGCTATTCGCAGGCCCCCCG
AAGGCCACCCCACACCTCGTCCTGCCAGTCCAGACCCGGGCAGAGTAGCTACCGTGTTGGCCTC
TGTAAAGCACAAAGAGGCCATTGGGCCTGACGGTGAAGTGGTGAACCGGCGCCGTACACTCAGT
GGCCCAGTCACTGGACTTTTGGCCACTGCTCGCCGGGGACCTGGGGAACCTGCAGAGCAGAGTC
ATTTTATGGAGGATGGCACGGCCCGACAACGGCTTCGAGGTCCAGCCAAGGGTGAGGCAGGTGT
GGAGGGTCCTCCCCTTGCCCGGGTAGAGGCCAGCGCCACACTCAAGAGGCGCATCCGGGCCAAG
CAGAGCCAACAGGAGAATGTCAAGTTCATCCTGACAGAGTCTGACACAGTCAAGCGCAGGCCCA
AGGCTAAGGAGCCTGACATTGGGCCTGAGCCACCCCCACCACTGTCCGTGTATCAGAATGGCAC
AGCCACCATCCGCCGACGGCCAGCCTCAGAGCAGGCTGGGCCCCCAGAGCTGCCCCCTCCTCCT
CCACCTGCCGAGCCCCCACCCACTGACCTGATGCCACTGCCTCCACTGCCCCTGCCTGATGGCA
GTGCACGGAAGCCGGTGAAGCCACCCGTCTCTCCCAAGCCCATTCTGGCTCAGCCTGTGTCCAA
GATCCAGGGCTCACCTACACCTGCCTCCAAGAAGGTGCCACTGCCAGGCCCTGGCAGCCCAGAG
GTAAAGCGTGCTCACGGCACGCCACCGCCTGTGTCACCCAAGCCTCCACCGCCACCTACAGCGC
CTAAGCCAGCCAAGGCTTTGGCGGGACTGCAGTCCAGCAGCGCCACCCCCTCGCCTGTGCCCTC
GCCGGCGCGTCAGCCGCCAGCAGCCCTCATCAAGCCAGCTAGCTCACCGCCCTCGCAGAGCGCC
AGCCCCGCCAAGCCCCCTTCCCCAGGGGCACCTGCGCTGCAAGTACCCACCAAGCCCCCTCGCG
CTGCCGCTTCAGTGGTCTCCGGACCCCCAGTAGCTTCAGATTGTGCTTCGCCCGGGGACAGTGC
TCGGCAGAAGCTGGAAGAGACTAGCGCGTGTTTGGCTGCAGCACTGCAGGCGGTGGAGGAGAAG
ATCAGGCAGGAAGACGGACAAGGCCCTCGCCCCTCCTCCATCGAGGAGAAGAGCACTGGCAGCA
TCCTGGAAGACATCGGCAGCATGTTTGACGACCTGGCCGACCAGCTGGACGCCATGCTGGAGTG
AGGCAGCCACCCACGTGGGCCCACCGTACTCCCCGCACTTTGACCTTTACCTCAGGACAGGCAC
TTCCAAGCGGTGGGTGGGGGCCGAGTGGGCGGGGCACGCCCAGCTCTGCACAAGCACAACTCCT
ACTCCTGGCCCAGGCTGGTCGTCAGCCCCCTGGCATGGGGGTCGGGGGCGCTCCAAGGGCTCTG
AGCAGATGCGCTGCCCGCTGGTGCCCATTCCTATCTGCTGCTCCCTGTGCAACAACTGCTGGGC
CCTACCCTTGCAGGCTTTGCTCTGCTGGCGGAGGGCTGCCCCTCCCTTGCCCTAGGCAGACTGA
GCACCAAGGGAAGATGAGGGGGGTGGTCCTGTGGCCCTCTCTCCAATCTGGCAGAGCACAGGCC
TAGGCCTAGCACAGAACTGCCCATTGGGGAACCTCTGCCAGCTGCTCTGGCACAGCACAAGGGA
CAGGGGGGCCAAGGTTGGGCTCGCCCCACTGCACCCCAGAATATAAGCTATCAAGAGTATTAAT
TTATTGGGAATGAGCTGAGGCAAATTTCCCCAGAAAAACAAAAAGATAACTTTAACAAATATAT
ATTTAAAGAGAAGAAATATTATTGATTCTATAGAAACCATTTACCAACAGGAAGGTTACAAGTC
CAGCTTGAGACTAAAGCTGTCAGAGGCTGAGGCCACCTGTCTGCCCTTCTCTTTCATCTAGGAG
TGGTCTTGCCCCTGGTCACGAGCACACCTGGGAGGCACAATCTGGGGGGTGGCTCTGCCCAGAG
CGTCTCCTCTGTTCTTCCAGCTCCCGAGTCTGAAGAATGTGAAGGACGTGCCTTGCTCTCACCG
GCTCTCCTCCATGCCACACAGGGCTCGGGAGGGCTTCTTCCTTCTGGGTGTGGCCATGCCCTTG
GGGTGCTGGTATAAGGGTATACCCAGTGTGAACCCTGTGTGGGCGTAAGTGCAAGGGCGTGCAT
GCCAGCCTAGGGGCAGATGTGTGTTTGAGCTGTGTCTGCTCCAGCCTCCCCAAGGCAGCCTCAT
AAGGCAGCCACCCCGCCCACCCTGAATTCCCATGGACGTTCTGCTCATGGTCTGAGGCTGTGTT
GTGTAGTACCTCTCACCTTCTTTTCTTCCCTCCAAAAAATACTGACTGGTCTCCTCTCGTGTTT
GCTGATCCACAAGTGTTGGGCATAACATTGACATTTCTTTAAACCCCCTCTCCCCCCAAAAAAG
AAAAGAAACCCAAAACAAAACCATAATTGTGGTGTAAGCTGGTGGAGGGGCCAACTAAGGTAGT
GTGGACACAGGGCCCCTCCAACTGTCACTCCTGGCGCTTCCTTATCTGAACATGCTGGCCATTT
ATCAGCCTCCTCTGTGTGGGCAGCCCAGGCTAGGGCTCTAGGAAGTGGGGAGGGGGGTCTGGAC
AGGGAGCTGCTGTCAGCTGTCAATAAACAGCAGAAACAGA

hide sequence

RefSeq Acc Id:

XM_039085091 ⟹ XP_038941019

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,031,963 - 14,037,927 (+)	NCBI
mRatBN7.2	10	13,527,416 - 13,533,380 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_542421	(Get FASTA)	NCBI Sequence Viewer
	XP_006245957	(Get FASTA)	NCBI Sequence Viewer
	XP_006245958	(Get FASTA)	NCBI Sequence Viewer
	XP_006245959	(Get FASTA)	NCBI Sequence Viewer
	XP_038941019	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAL49756	(Get FASTA)	NCBI Sequence Viewer
	EDM03838	(Get FASTA)	NCBI Sequence Viewer
	EDM03839	(Get FASTA)	NCBI Sequence Viewer
	EDM03840	(Get FASTA)	NCBI Sequence Viewer
	EDM03841	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000004486
	ENSRNOP00000039956
GenBank Protein	Q8VHK2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_542421 ⟸ NM_080690

- UniProtKB:

Q8VHK2 (UniProtKB/Swiss-Prot), A0A8J8XK13 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGKEQELVQAVKAEDVGTAQRLLQRPRPGKAKLLGSTKKINVNFQDPDGFSALHHAALNGNTEL
ISLLLEAQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHLAAQHGHY
DVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDTTDPNGTSP
LHLAAKNGHIDIIRLLLQAGIDINRQTKSGTALHEAALCGKTEVVRLLLDSGINAQVRNTYSQT
ALDIVHQFTTSQASKEIKQLLREASAALQVRATKDYCNNYDLTSLNVKAGDIITVLEQHPDGRW
KGCIHDNRTGNDRVGYFPSSLGEAIVKRAGSRTGSEPSPPQGGGSLGPSAPPEEIWVLRKPFAG
GDRSGSLSNVAGGRSTGGHALHAGAEGVKLLATVLSQKSVSESSPGDSPVKPPEGSSGAARSQP
PAAHAGQVYGEQPPKKLESSSASEGKSAEAVSQWLATFQLQLYAPNFTSAGYDLPTISRMTPED
LTAIGVTKPGHRKKITAEISGLNIPDCLPEHKPANLAVWLSMIGLAQYYKVLVDNGYENIDFIT
DITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAEYSKYEGGPLRRKAPQSLEMMAIESPPPSE
PAAAECQSPKMTTFQDSELSGELQAALSGPAEAGAAAAEKSSNHLPATPRTTSRQESSLSGRAR
HMSSSQELLGDGPQGPGSPMSRSQEYLLDEGPAPGTPPKEVRSSRHGHSVKRASVPPVPGKPRQ
VLPSGVSHFTPPQTPTKAQPGSPQALGGPHGPATAKVKPTPQLLPPTDRPMSPRSLPQSPTHRG
FAYVLPQPVEGEAGPPAPGPVPPPVPAAVPTLCLPPEADVEPGRPKKRAHSLNRYAASDSEPER
DELLVPAAAGPYATVQRRVGRSHSVRAPAGTDKNVNRSQSFAVRPRKKGPPPPPPKRSSSAMAS
ANLADEPSPDVETEDGRLGVRAQRRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAIRRP
PEGHPTPRPASPDPGRVATVLASVKHKEAIGPDGEVVNRRRTLSGPVTGLLATARRGPGEPAEQ
SHFMEDGTARQRLRGPAKGEAGVEGPPLARVEASATLKRRIRAKQSQQENVKFILTESDTVKRR
PKAKEPDIGPEPPPPLSVYQNGTATIRRRPASEQAGPPELPPPPPPAEPPPTDLMPLPPLPLPD
GSARKPVKPPVSPKPILAQPVSKIQGSPTPASKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPT
APKPAKALAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQSASPAKPPSPGAPALQVPTKPP
RAAASVVSGPPVASDCASPGDSARQKLEETSACLAAALQAVEEKIRQEDGQGPRPSSIEEKSTG
SILEDIGSMFDDLADQLDAMLE

hide sequence

RefSeq Acc Id:	XP_006245957 ⟸ XM_006245895
- Peptide Label:	isoform X1
- UniProtKB:	Q8VHK2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGKEQELVQAVKAEDVGTAQRLLQRPRPGKAKLLGSTKKINVNFQDPDGPVLHLPSFSALHHAA LNGNTELISLLLEAQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHL AAQHGHYDVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDTT DPNGTSPLHLAAKNGHIDIIRLLLQAGIDINRQTKSGTALHEAALCGKTEVVRLLLDSGINAQV RNTYSQTALDIVHQFTTSQASKEIKQLLREASAALQVRATKDYCNNYDLTSLNVKAGDIITVLE QHPDGRWKGCIHDNRTGNDRVGYFPSSLGEAIVKRAGSRTGSEPSPPQGGGSLGPSAPPEEIWV LRKPFAGGDRSGSLSNVAGGRSTGGHALHAGAEGVKLLATVLSQKSVSESSPGDSPVKPPEGSS GAARSQPPAAHAGQVYGEQPPKKLESSSASEGKSAEAVSQWLATFQLQLYAPNFTSAGYDLPTI SRMTPEDLTAIGVTKPGHRKKITAEISGLNIPDCLPEHKPANLAVWLSMIGLAQYYKVLVDNGY ENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAEYSKYEGGPLRRKAPQSLEMMAI ESPPPSEPAAAECQSPKMTTFQDSELSGELQAALSGPAEAGAAAAEKSSNHLPATPRTTSRQES SLSGRARHMSSSQELLGDGPQGPGSPMSRSQEYLLDEGPAPGTPPKEVRSSRHGHSVKRASVPP VPGKPRQVLPSGVSHFTPPQTPTKAQPGSPQALGGPHGPATAKVKPTPQLLPPTDRPMSPRSLP QSPTHRGFAYVLPQPVEGEAGPPAPGPVPPPVPAAVPTLCLPPEADVEPGRPKKRAHSLNRYAA SDSEPERDELLVPAAAGPYATVQRRVGRSHSVRAPAGTDKNVNRSQSFAVRPRKKGPPPPPPKR SSSAMASANLADEPSPDVETEDGRLGVRAQRRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGG GRAIRRPPEGHPTPRPASPDPGRVATVLASVKHKEAIGPDGEVVNRRRTLSGPVTGLLATARRG PGEPAEQSHFMEDGTARQRLRGPAKGEAGVEGPPLARVEASATLKRRIRAKQSQQENVKFILTE SDTVKRRPKAKEPDIGPEPPPPLSVYQNGTATIRRRPASEQAGPPELPPPPPPAEPPPTDLMPL PPLPLPDGSARKPVKPPVSPKPILAQPVSKIQGSPTPASKKVPLPGPGSPEVKRAHGTPPPVSP KPPPPPTAPKPAKALAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQSASPAKPPSPGAPAL QVPTKPPRAAASVVSGPPVASDCASPGDSARQKLEETSACLAAALQAVEEKIRQEDGQGPRPSS IEEKSTGSILEDIGSMFDDLADQLDAMLE hide sequence

RefSeq Acc Id:	XP_006245958 ⟸ XM_006245896
- Peptide Label:	isoform X2
- UniProtKB:	Q8VHK2 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGKEQELVQAVKAEDVGTAQRLLQRPRPGKAKLLGSTKKINVNFQDPDGPVLHLPSFSALHHAA LNGNTELISLLLEAQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHL AAQHGHYDVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDTT DPNGTSPLHLAAKNGHIDIIRLLLQAGIDINRQTKSGTALHEAALCGKTEVVRLLLDSGINAQV RNTYSQTALDIVHQFTTSQASKEIKQLLREASAALQVRATKDYCNNYDLTSLNVKAGDIITVLE QHPDGRWKGCIHDNRTGNDRVGYFPSSLGEAIVKRAGSRTGSEPSPPQGGGSLGPSAPPEEIWV LRKPFAGGDRSGSLSNVAGGRSTGGHALHAGAEGVKLLATVLSQKSVSESSPGDSPVKPPEGSS GAARSQPPAAHAGQVYGEQPPKKLESSSASEGKANLAVWLSMIGLAQYYKVLVDNGYENIDFIT DITWEDLQEIGITKLGHQKKLMLAVRKLAELQKAEYSKYEGGPLRRKAPQSLEMMAIESPPPSE PAAAECQSPKMTTFQDSELSGELQAALSGPAEAGAAAAEKSSNHLPATPRTTSRQESSLSGRAR HMSSSQELLGDGPQGPGSPMSRSQEYLLDEGPAPGTPPKEVRSSRHGHSVKRASVPPVPGKPRQ VLPSGVSHFTPPQTPTKAQPGSPQALGGPHGPATAKVKPTPQLLPPTDRPMSPRSLPQSPTHRG FAYVLPQPVEGEAGPPAPGPVPPPVPAAVPTLCLPPEADVEPGRPKKRAHSLNRYAASDSEPER DELLVPAAAGPYATVQRRVGRSHSVRAPAGTDKNVNRSQSFAVRPRKKGPPPPPPKRSSSAMAS ANLADEPSPDVETEDGRLGVRAQRRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAIRRP PEGHPTPRPASPDPGRVATVLASVKHKEAIGPDGEVVNRRRTLSGPVTGLLATARRGPGEPAEQ SHFMEDGTARQRLRGPAKGEAGVEGPPLARVEASATLKRRIRAKQSQQENVKFILTESDTVKRR PKAKEPDIGPEPPPPLSVYQNGTATIRRRPASEQAGPPELPPPPPPAEPPPTDLMPLPPLPLPD GSARKPVKPPVSPKPILAQPVSKIQGSPTPASKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPT APKPAKALAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQSASPAKPPSPGAPALQVPTKPP RAAASVVSGPPVASDCASPGDSARQKLEETSACLAAALQAVEEKIRQEDGQGPRPSSIEEKSTG SILEDIGSMFDDLADQLDAMLE hide sequence

RefSeq Acc Id:	XP_006245959 ⟸ XM_006245897
- Peptide Label:	isoform X3
- UniProtKB:	Q8VHK2 (UniProtKB/Swiss-Prot), F1LS31 (UniProtKB/TrEMBL), D3ZE17 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGKEQELVQAVKAEDVGTAQRLLQRPRPGKAKLLGSTKKINVNFQDPDGFSALHHAALNGNTEL ISLLLEAQAAVDIKDNKGMRPLHYAAWQGRKEPMKLVLKAGSAVNVPSDEGHIPLHLAAQHGHY DVSEMLLQHQSNPCMVDNSGKTPLDLACEFGRVGVVQLLLSSNMCAALLEPRPGDTTDPNGTSP LHLAAKNGHIDIIRLLLQAGIDINRQTKSGTALHEAALCGKTEVVRLLLDSGINAQVRNTYSQT ALDIVHQFTTSQASKEIKQLLREASAALQVRATKDYCNNYDLTSLNVKAGDIITVLEQHPDGRW KGCIHDNRTGNDRVGYFPSSLGEAIVKRAGSRTGSEPSPPQGGGSLGPSAPPEEIWVLRKPFAG GDRSGSLSNVAGGRSTGGHALHAGAEGVKLLATVLSQKSVSESSPGDSPVKPPEGSSGAARSQP PAAHAGQVYGEQPPKKLESSSASEGKANLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDL QEIGITKLGHQKKLMLAVRKLAELQKAEYSKYEGGPLRRKAPQSLEMMAIESPPPSEPAAAECQ SPKMTTFQDSELSGELQAALSGPAEAGAAAAEKSSNHLPATPRTTSRQESSLSGRARHMSSSQE LLGDGPQGPGSPMSRSQEYLLDEGPAPGTPPKEVRSSRHGHSVKRASVPPVPGKPRQVLPSGVS HFTPPQTPTKAQPGSPQALGGPHGPATAKVKPTPQLLPPTDRPMSPRSLPQSPTHRGFAYVLPQ PVEGEAGPPAPGPVPPPVPAAVPTLCLPPEADVEPGRPKKRAHSLNRYAASDSEPERDELLVPA AAGPYATVQRRVGRSHSVRAPAGTDKNVNRSQSFAVRPRKKGPPPPPPKRSSSAMASANLADEP SPDVETEDGRLGVRAQRRRASDLAGSVDTGSAGSVKSIAAMLELSSIGGGGRAIRRPPEGHPTP RPASPDPGRVATVLASVKHKEAIGPDGEVVNRRRTLSGPVTGLLATARRGPGEPAEQSHFMEDG TARQRLRGPAKGEAGVEGPPLARVEASATLKRRIRAKQSQQENVKFILTESDTVKRRPKAKEPD IGPEPPPPLSVYQNGTATIRRRPASEQAGPPELPPPPPPAEPPPTDLMPLPPLPLPDGSARKPV KPPVSPKPILAQPVSKIQGSPTPASKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPAKA LAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQSASPAKPPSPGAPALQVPTKPPRAAASVV SGPPVASDCASPGDSARQKLEETSACLAAALQAVEEKIRQEDGQGPRPSSIEEKSTGSILEDIG SMFDDLADQLDAMLE hide sequence

Ensembl Acc Id:

ENSRNOP00000039956 ⟸ ENSRNOT00000043951

Ensembl Acc Id:

ENSRNOP00000004486 ⟸ ENSRNOT00000004486

RefSeq Acc Id:	XP_038941019 ⟸ XM_039085091
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000082739 ⟸ ENSRNOT00000109050

Protein Domains

SAM SH3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8VHK2-F1-model_v2	AlphaFold	Q8VHK2	1-1430	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697013

Promoter ID:

EPDNEW_R7538

Type:

single initiation site

Name:

Caskin1_1

Description:

CASK interacting protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	13,854,408 - 13,854,468	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620191	AgrOrtholog
BioCyc Gene	G2FUF-25854	BioCyc
Ensembl Genes	ENSRNOG00000003195	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000004486	ENTREZGENE
	ENSRNOT00000043951	ENTREZGENE
Gene3D-CATH	1.10.150.50	UniProtKB/Swiss-Prot
	1.25.40.20	UniProtKB/Swiss-Prot
	SH3 Domains	UniProtKB/Swiss-Prot
InterPro	ANKS1/Caskin	UniProtKB/Swiss-Prot
	Ankyrin_rpt	UniProtKB/Swiss-Prot
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot
	Caskin1-CID	UniProtKB/Swiss-Prot
	Caskin1/2_SAM_1	UniProtKB/Swiss-Prot
	Caskin1/2_SAM_2	UniProtKB/Swiss-Prot
	Caskin1_SH3	UniProtKB/Swiss-Prot
	Caskin_C	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SAM/pointed_sf	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
KEGG Report	rno:140722	UniProtKB/Swiss-Prot
NCBI Gene	140722	ENTREZGENE
PANTHER	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
	PTHR24174:SF11	UniProtKB/Swiss-Prot
Pfam	Ank_2	UniProtKB/Swiss-Prot
	Ank_4	UniProtKB/Swiss-Prot
	Caskin-Pro-rich	UniProtKB/Swiss-Prot
	Caskin-tail	UniProtKB/Swiss-Prot
	Caskin1-CID	UniProtKB/Swiss-Prot
	SAM_1	UniProtKB/Swiss-Prot
	SH3_2	UniProtKB/Swiss-Prot
PhenoGen	Caskin1	PhenoGen
PRINTS	ANKYRIN	UniProtKB/Swiss-Prot
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot
	ANK_REPEAT	UniProtKB/Swiss-Prot
	SAM_DOMAIN	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000003195	RatGTEx
SMART	ANK	UniProtKB/Swiss-Prot
	SAM	UniProtKB/Swiss-Prot
	SH3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47769	UniProtKB/Swiss-Prot
	SSF48403	UniProtKB/Swiss-Prot
	SSF50044	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZVH8_RAT	UniProtKB/TrEMBL
	A0A8J8XK13	ENTREZGENE, UniProtKB/TrEMBL
	A6HCT4_RAT	UniProtKB/TrEMBL
	A6HCT5_RAT	UniProtKB/TrEMBL
	A6HCT6_RAT	UniProtKB/TrEMBL
	CSKI1_RAT	UniProtKB/Swiss-Prot
	D3ZE17	ENTREZGENE, UniProtKB/TrEMBL
	F1LS31	ENTREZGENE
	Q8VHK2	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Caskin1	CASK interacting protein 1	Caskin1	cask-interacting protein 1	Name updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains six N-terminal ankyrin repeats, a single SH3 domain, and two sterile alpha motif domains, a long proline-rich sequence and a short conserved C-terminal domain	632380

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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