Gapdhs (glyceraldehyde-3-phosphate dehydrogenase, spermatogenic) - Rat Genome Database

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Gene: Gapdhs (glyceraldehyde-3-phosphate dehydrogenase, spermatogenic) Rattus norvegicus
Analyze
Symbol: Gapdhs
Name: glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
RGD ID: 620150
Description: Predicted to enable glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity. Involved in spermatid development. Located in motile cilium. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human GAPDHS (glyceraldehyde-3-phosphate dehydrogenase, spermatogenic); PARTICIPATES IN gluconeogenesis pathway; glycolysis pathway; glycolysis/gluconeogenesis pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: gapdh-2; Gapds; glyceraldehyde-3-phosphate dehydrogenase type 2; glyceraldehyde-3-phosphate dehydrogenase, testis-specific; spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2; spermatogenic glyceraldehyde-3-phosphate dehydrogenase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,106,516 - 95,125,918 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,106,518 - 95,121,055 (-)EnsemblGRCr8
mRatBN7.2185,979,096 - 85,994,153 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,979,098 - 85,993,640 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx191,394,608 - 91,409,255 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,860,784 - 99,875,431 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,152,903 - 93,167,552 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,180,063 - 89,195,347 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,180,063 - 89,194,602 (-)Ensemblrn6Rnor6.0
Rnor_5.0190,334,992 - 90,349,782 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4185,773,751 - 85,788,290 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,350,668 - 80,365,207 (-)NCBICelera
RGSC_v3.1185,851,861 - 85,866,401 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Fibrous sheath of mammalian spermatozoa. Eddy EM, etal., Microsc Res Tech 2003 May 1;61(1):103-15.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
5. Association of late-onset Alzheimer's disease with genetic variation in multiple members of the GAPD gene family. Li Y, etal., Proc Natl Acad Sci U S A 2004 Nov 2;101(44):15688-93. Epub 2004 Oct 26.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Preferential localization of rat GAPDS on the ribs of fibrous sheath of sperm flagellum and its expression during flagellar formation. Tanii I, etal., Acta Histochem Cytochem. 2007 Feb 27;40(1):19-26. Epub 2007 Feb 5.
14. Human glyceraldehyde 3-phosphate dehydrogenase-2 gene is expressed specifically in spermatogenic cells. Welch JE, etal., J Androl 2000 Mar-Apr;21(2):328-38.
Additional References at PubMed
PMID:3170585   PMID:7144574   PMID:9510974   PMID:12477932   PMID:15546993   PMID:16687649   PMID:16700075   PMID:19759366   PMID:21630459   PMID:23306140  


Genomics

Comparative Map Data
Gapdhs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8195,106,516 - 95,125,918 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl195,106,518 - 95,121,055 (-)EnsemblGRCr8
mRatBN7.2185,979,096 - 85,994,153 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,979,098 - 85,993,640 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx191,394,608 - 91,409,255 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,860,784 - 99,875,431 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0193,152,903 - 93,167,552 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0189,180,063 - 89,195,347 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,180,063 - 89,194,602 (-)Ensemblrn6Rnor6.0
Rnor_5.0190,334,992 - 90,349,782 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4185,773,751 - 85,788,290 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera180,350,668 - 80,365,207 (-)NCBICelera
RGSC_v3.1185,851,861 - 85,866,401 (-)NCBI
Cytogenetic Map1q21NCBI
GAPDHS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,533,456 - 35,545,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,533,455 - 35,545,319 (+)Ensemblhg38GRCh38
GRCh371936,024,358 - 36,036,221 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361940,716,154 - 40,728,061 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341940,716,203 - 40,728,058NCBI
Celera1932,737,767 - 32,749,674 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,529,762 - 32,541,666 (+)NCBIHuRef
CHM1_11936,025,880 - 36,037,787 (+)NCBICHM1_1
T2T-CHM13v2.01938,078,404 - 38,090,265 (+)NCBIT2T-CHM13v2.0
Gapdhs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,429,204 - 30,443,106 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,429,200 - 30,443,106 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38730,729,779 - 30,744,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,729,775 - 30,743,681 (-)Ensemblmm10GRCm38
MGSCv37731,514,906 - 31,524,375 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36730,438,647 - 30,448,116 (-)NCBIMGSCv36mm8
Celera725,312,000 - 25,321,463 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map719.23NCBI
Gapdhs
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554684,756,972 - 4,775,757 (+)Ensembl
ChiLan1.0NW_0049554684,757,080 - 4,773,675 (+)NCBIChiLan1.0ChiLan1.0
GAPDHS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,545,282 - 41,558,098 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,528,750 - 43,541,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,479,559 - 32,491,959 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,216,758 - 41,228,750 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,216,758 - 41,228,750 (+)EnsemblpanPan2panpan1.1
GAPDHS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11117,121,290 - 117,129,159 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1117,121,293 - 117,129,164 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1116,524,386 - 116,532,255 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01117,721,449 - 117,729,315 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,721,452 - 117,729,319 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11117,284,542 - 117,292,412 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,910,339 - 116,918,197 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,965,611 - 117,973,472 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gapdhs
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,816,704 - 10,826,361 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936570819,387 - 829,087 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936570819,562 - 830,072 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAPDHS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl644,969,139 - 44,979,166 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1644,968,965 - 44,978,992 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,367,766 - 40,377,606 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAPDHS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,458,076 - 30,470,139 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl630,458,383 - 30,470,139 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660738,252,774 - 8,264,525 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gapdhs
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247948,064,074 - 8,067,392 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247948,064,074 - 8,072,875 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gapdhs
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12165,272,116 - 165,286,677 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gapdhs
46 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:44
Interacting mature miRNAs:45
Transcripts:ENSRNOT00000028518, ENSRNOT00000067813
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 25 108 66 65 34 62 34 6 201 110 1 88 33 59 31 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000028518   ⟹   ENSRNOP00000028518
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,106,518 - 95,121,055 (-)Ensembl
mRatBN7.2 Ensembl185,979,098 - 85,993,640 (-)Ensembl
Rnor_6.0 Ensembl189,180,063 - 89,194,602 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000067813   ⟹   ENSRNOP00000059802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,106,520 - 95,116,581 (-)Ensembl
mRatBN7.2 Ensembl185,979,100 - 85,989,166 (-)Ensembl
Rnor_6.0 Ensembl189,180,067 - 89,190,128 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110742   ⟹   ENSRNOP00000076691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl195,106,518 - 95,115,004 (-)Ensembl
mRatBN7.2 Ensembl185,979,098 - 85,987,588 (-)Ensembl
RefSeq Acc Id: NM_023964   ⟹   NP_076454
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,516 - 95,121,055 (-)NCBI
mRatBN7.2185,979,096 - 85,993,640 (-)NCBI
Rnor_6.0189,180,063 - 89,194,602 (-)NCBI
Rnor_5.0190,334,992 - 90,349,782 (-)NCBI
RGSC_v3.4185,773,751 - 85,788,290 (-)RGD
Celera180,350,668 - 80,365,207 (-)RGD
Sequence:
RefSeq Acc Id: XM_006228790   ⟹   XP_006228852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,517 - 95,116,802 (-)NCBI
mRatBN7.2185,979,097 - 85,989,215 (-)NCBI
Rnor_6.0189,180,064 - 89,190,472 (-)NCBI
Rnor_5.0190,334,992 - 90,349,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006228791   ⟹   XP_006228853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,517 - 95,125,918 (-)NCBI
mRatBN7.2185,979,099 - 85,994,153 (-)NCBI
Rnor_6.0189,180,064 - 89,195,347 (-)NCBI
Rnor_5.0190,334,992 - 90,349,782 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090188   ⟹   XP_038946116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,517 - 95,113,339 (-)NCBI
mRatBN7.2185,979,099 - 85,993,663 (-)NCBI
RefSeq Acc Id: XM_063273145   ⟹   XP_063129215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8195,106,517 - 95,115,958 (-)NCBI
RefSeq Acc Id: NP_076454   ⟸   NM_023964
- UniProtKB: Q9ESV6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006228852   ⟸   XM_006228790
- Peptide Label: isoform X1
- UniProtKB: B1WBQ8 (UniProtKB/TrEMBL),   F7FCA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228853   ⟸   XM_006228791
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000059802   ⟸   ENSRNOT00000067813
Ensembl Acc Id: ENSRNOP00000028518   ⟸   ENSRNOT00000028518
RefSeq Acc Id: XP_038946116   ⟸   XM_039090188
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000076691   ⟸   ENSRNOT00000110742
RefSeq Acc Id: XP_063129215   ⟸   XM_063273145
- Peptide Label: isoform X3
Protein Domains
Glyceraldehyde 3-phosphate dehydrogenase NAD(P)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ESV6-F1-model_v2 AlphaFold Q9ESV6 1-432 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689933
Promoter ID:EPDNEW_R454
Type:initiation region
Name:Gapdhs_2
Description:glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R455  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0189,190,153 - 89,190,213EPDNEW
RGD ID:13689930
Promoter ID:EPDNEW_R455
Type:initiation region
Name:Gapdhs_1
Description:glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R454  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0189,194,649 - 89,194,709EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620150 AgrOrtholog
BioCyc Gene G2FUF-60080 BioCyc
Ensembl Genes ENSRNOG00000021009 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000028518 ENTREZGENE
  ENSRNOT00000028518.7 UniProtKB/Swiss-Prot
  ENSRNOT00000067813 ENTREZGENE
Gene3D-CATH Dihydrodipicolinate Reductase, domain 2 UniProtKB/Swiss-Prot
  NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7112898 IMAGE-MGC_LOAD
InterPro GlycerAld/Erythrose_P_DH UniProtKB/Swiss-Prot
  GlycerAld_3-P_DH_AS UniProtKB/Swiss-Prot
  GlycerAld_3-P_DH_cat UniProtKB/Swiss-Prot
  GlycerAld_3-P_DH_NAD(P)-bd UniProtKB/Swiss-Prot
  Glyceraldehyde-3-P_DH_1 UniProtKB/Swiss-Prot
  NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:66020 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187369 IMAGE-MGC_LOAD
NCBI Gene 66020 ENTREZGENE
PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, TESTIS-SPECIFIC UniProtKB/Swiss-Prot
  PTHR10836 UniProtKB/Swiss-Prot
Pfam Gp_dh_C UniProtKB/Swiss-Prot
  Gp_dh_N UniProtKB/Swiss-Prot
PhenoGen Gapdhs PhenoGen
PRINTS G3PDHDRGNASE UniProtKB/Swiss-Prot
PROSITE GAPDH UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000021009 RatGTEx
SMART Gp_dh_N UniProtKB/Swiss-Prot
Superfamily-SCOP Formin homology 2 domain (FH2 domain) UniProtKB/Swiss-Prot
  Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain UniProtKB/Swiss-Prot
  SSF51735 UniProtKB/Swiss-Prot
UniProt A0A8I5ZK49_RAT UniProtKB/TrEMBL
  B1WBQ8 ENTREZGENE, UniProtKB/TrEMBL
  F7FCA4 ENTREZGENE, UniProtKB/TrEMBL
  G3PT_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Gapdhs  glyceraldehyde-3-phosphate dehydrogenase, spermatogenic  Gapds    Symbol updated 1299863 APPROVED
2004-09-10 Gapds  glyceraldehyde-3-phosphate dehydrogenase, spermatogenic    glyceraldehyde-3-phosphate dehydrogenase type 2  Name updated 1299863 APPROVED
2002-08-07 Gapds  glyceraldehyde-3-phosphate dehydrogenase type 2      Symbol and Name status set to provisional 70820 PROVISIONAL