Pitpnb (phosphatidylinositol transfer protein, beta) - Rat Genome Database

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Gene: Pitpnb (phosphatidylinositol transfer protein, beta) Rattus norvegicus
Analyze
Symbol: Pitpnb
Name: phosphatidylinositol transfer protein, beta
RGD ID: 620143
Description: Enables phospholipid binding activity and phospholipid transporter activity. Involved in phospholipid transport. Located in Golgi membrane and endoplasmic reticulum membrane. Orthologous to human PITPNB (phosphatidylinositol transfer protein beta); INTERACTS WITH aconitine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: phosphatidylinositol transfer protein beta isoform; phosphotidylinositol transfer protein, beta; PI-TP-beta; ptdIns transfer protein beta; ptdInsTP beta
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,909,140 - 50,958,193 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1250,909,143 - 50,958,140 (-)EnsemblGRCr8
mRatBN7.21245,249,308 - 45,298,388 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,249,333 - 45,298,314 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1246,423,013 - 46,471,917 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,029,253 - 47,078,153 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,089,773 - 46,138,673 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,279,194 - 51,341,752 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,280,150 - 51,341,716 (-)Ensemblrn6Rnor6.0
Rnor_5.01253,020,763 - 53,083,078 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41245,386,041 - 45,434,744 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1246,815,703 - 46,863,897 (-)NCBICelera
RGSC_v3.11245,249,428 - 45,298,132 (-)NCBI
RH 3.4 Map12811.51RGD
Cytogenetic Map12q16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Dynamics of lipid transfer by phosphatidylinositol transfer proteins in cells. Shadan S, etal., Traffic. 2008 Sep;9(10):1743-56. doi: 10.1111/j.1600-0854.2008.00794.x. Epub 2008 Jul 9.
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
9. Cloning of a cDNA encoding a second phosphatidylinositol transfer protein of rat brain by complementation of the yeast sec14 mutation. Tanaka S and Hosaka K, J Biochem (Tokyo) 1994 May;115(5):981-4.
10. Structure of PITPbeta in complex with phosphatidylcholine: comparison of structure and lipid transfer to other PITP isoforms. Vordtriede PB, etal., Biochemistry. 2005 Nov 15;44(45):14760-71.
Additional References at PubMed
PMID:11907258   PMID:15489334   PMID:16779671   PMID:16780419   PMID:23376485  


Genomics

Comparative Map Data
Pitpnb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81250,909,140 - 50,958,193 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1250,909,143 - 50,958,140 (-)EnsemblGRCr8
mRatBN7.21245,249,308 - 45,298,388 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,249,333 - 45,298,314 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1246,423,013 - 46,471,917 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01247,029,253 - 47,078,153 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01246,089,773 - 46,138,673 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01251,279,194 - 51,341,752 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,280,150 - 51,341,716 (-)Ensemblrn6Rnor6.0
Rnor_5.01253,020,763 - 53,083,078 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41245,386,041 - 45,434,744 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1246,815,703 - 46,863,897 (-)NCBICelera
RGSC_v3.11245,249,428 - 45,298,132 (-)NCBI
RH 3.4 Map12811.51RGD
Cytogenetic Map12q16NCBI
PITPNB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382227,851,669 - 27,919,256 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2227,851,669 - 27,920,134 (-)Ensemblhg38GRCh38
GRCh372228,247,657 - 28,315,244 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362226,577,657 - 26,645,255 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342226,572,211 - 26,639,809NCBI
Celera2212,047,622 - 12,115,220 (-)NCBICelera
Cytogenetic Map22q12.1NCBI
HuRef2211,211,977 - 11,279,827 (-)NCBIHuRef
CHM1_12228,206,929 - 28,274,545 (-)NCBICHM1_1
T2T-CHM13v2.02228,313,107 - 28,380,672 (-)NCBIT2T-CHM13v2.0
Pitpnb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395111,478,563 - 111,536,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5111,478,629 - 111,536,225 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385111,330,697 - 111,388,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5111,330,763 - 111,388,359 (+)Ensemblmm10GRCm38
MGSCv375111,759,783 - 111,817,379 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365111,571,066 - 111,628,662 (+)NCBIMGSCv36mm8
Celera5108,458,102 - 108,515,847 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.79NCBI
Pitpnb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554552,211,870 - 2,275,118 (-)Ensembl
ChiLan1.0NW_0049554552,210,019 - 2,275,206 (-)NCBIChiLan1.0ChiLan1.0
PITPNB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22337,847,248 - 37,914,883 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12240,546,186 - 40,613,820 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0228,903,075 - 8,970,712 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12226,622,957 - 26,690,509 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2226,624,899 - 26,685,588 (-)EnsemblpanPan2panpan1.1
PITPNB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12621,304,464 - 21,369,221 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2621,306,217 - 21,369,153 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2621,175,308 - 21,240,063 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02621,671,155 - 21,735,940 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2621,661,087 - 21,735,913 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12621,388,919 - 21,453,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02621,644,580 - 21,709,555 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02621,713,376 - 21,778,146 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pitpnb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118113,712,480 - 113,775,567 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366572,096,951 - 2,158,111 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366572,095,140 - 2,158,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PITPNB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1445,185,451 - 45,250,084 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11445,185,705 - 45,250,089 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21448,079,115 - 48,143,553 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PITPNB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11910,758,359 - 10,826,821 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1910,761,589 - 10,821,852 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045115,293,666 - 115,362,179 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pitpnb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247474,172,948 - 4,235,501 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pitpnb
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11642,588,705 - 42,640,632 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:791
Count of miRNA genes:243
Interacting mature miRNAs:302
Transcripts:ENSRNOT00000052202, ENSRNOT00000066892
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat

Markers in Region
AI256223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,250,417 - 45,250,500 (+)MAPPERmRatBN7.2
mRatBN7.24181,877,696 - 181,877,779 (+)MAPPERmRatBN7.2
Rnor_6.04183,390,716 - 183,390,798NCBIRnor6.0
Rnor_6.01251,280,304 - 51,280,386NCBIRnor6.0
Rnor_5.04247,521,603 - 247,521,685UniSTSRnor5.0
Rnor_5.01253,021,873 - 53,021,955UniSTSRnor5.0
RGSC_v3.41245,387,148 - 45,387,230UniSTSRGSC3.4
Celera1246,816,810 - 46,816,892UniSTS
Celera4170,345,593 - 170,345,675UniSTS
Cytogenetic Map12q16UniSTS
RH127849  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,249,451 - 45,249,631 (+)MAPPERmRatBN7.2
mRatBN7.24181,876,695 - 181,876,875 (+)MAPPERmRatBN7.2
Rnor_6.04183,389,715 - 183,389,894NCBIRnor6.0
Rnor_6.01251,279,338 - 51,279,517NCBIRnor6.0
Rnor_5.04247,520,602 - 247,520,781UniSTSRnor5.0
Rnor_5.01253,020,907 - 53,021,086UniSTSRnor5.0
RGSC_v3.41245,386,182 - 45,386,361UniSTSRGSC3.4
Celera1246,815,844 - 46,816,023UniSTS
Celera4170,344,592 - 170,344,771UniSTS
Cytogenetic Map12q16UniSTS
RH130201  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,250,424 - 45,250,611 (+)MAPPERmRatBN7.2
Rnor_6.01251,280,311 - 51,280,497NCBIRnor6.0
Rnor_5.01253,021,880 - 53,022,066UniSTSRnor5.0
RGSC_v3.41245,387,155 - 45,387,341UniSTSRGSC3.4
Celera1246,816,817 - 46,817,003UniSTS
Cytogenetic Map12q16UniSTS
RH142288  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,249,428 - 45,249,628 (+)MAPPERmRatBN7.2
Rnor_6.01251,279,315 - 51,279,514NCBIRnor6.0
Rnor_5.01253,020,884 - 53,021,083UniSTSRnor5.0
RGSC_v3.41245,386,159 - 45,386,358UniSTSRGSC3.4
Celera1246,815,821 - 46,816,020UniSTS
RH 3.4 Map12811.51UniSTS
Cytogenetic Map12q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000052202   ⟹   ENSRNOP00000050368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1250,910,096 - 50,958,140 (-)Ensembl
mRatBN7.2 Ensembl1245,250,264 - 45,298,311 (-)Ensembl
Rnor_6.0 Ensembl1251,280,150 - 51,341,716 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000066892   ⟹   ENSRNOP00000058957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1250,913,743 - 50,952,656 (-)Ensembl
mRatBN7.2 Ensembl1245,253,911 - 45,292,827 (-)Ensembl
Rnor_6.0 Ensembl1251,281,987 - 51,341,663 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115109   ⟹   ENSRNOP00000091407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1250,914,165 - 50,952,656 (-)Ensembl
mRatBN7.2 Ensembl1245,253,333 - 45,292,827 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115325   ⟹   ENSRNOP00000078649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1250,909,143 - 50,958,111 (-)Ensembl
mRatBN7.2 Ensembl1245,249,333 - 45,298,314 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000158676   ⟹   ENSRNOP00000104999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1250,909,143 - 50,958,111 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000160953   ⟹   ENSRNOP00000106488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1250,909,143 - 50,958,111 (-)Ensembl
RefSeq Acc Id: NM_053742   ⟹   NP_446194
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,909,143 - 50,958,111 (-)NCBI
mRatBN7.21245,249,311 - 45,298,282 (-)NCBI
Rnor_6.01251,279,197 - 51,341,687 (-)NCBI
Rnor_5.01253,020,763 - 53,083,078 (-)NCBI
RGSC_v3.41245,386,041 - 45,434,744 (-)RGD
Celera1246,815,703 - 46,863,897 (-)RGD
Sequence:
RefSeq Acc Id: XM_006249522   ⟹   XP_006249584
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,909,140 - 50,958,193 (-)NCBI
mRatBN7.21245,249,308 - 45,298,388 (-)NCBI
Rnor_6.01251,279,194 - 51,341,751 (-)NCBI
Rnor_5.01253,020,763 - 53,083,078 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063270991   ⟹   XP_063127061
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,911,897 - 50,943,939 (-)NCBI
RefSeq Acc Id: XM_063270992   ⟹   XP_063127062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81250,919,040 - 50,944,000 (-)NCBI
RefSeq Acc Id: NP_446194   ⟸   NM_053742
- UniProtKB: Q6P7S3 (UniProtKB/Swiss-Prot),   P53812 (UniProtKB/Swiss-Prot),   A6J279 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249584   ⟸   XM_006249522
- Peptide Label: isoform X3
- UniProtKB: D3ZCD4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000058957   ⟸   ENSRNOT00000066892
Ensembl Acc Id: ENSRNOP00000050368   ⟸   ENSRNOT00000052202
Ensembl Acc Id: ENSRNOP00000078649   ⟸   ENSRNOT00000115325
Ensembl Acc Id: ENSRNOP00000091407   ⟸   ENSRNOT00000115109
RefSeq Acc Id: XP_063127061   ⟸   XM_063270991
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063127062   ⟸   XM_063270992
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000106488   ⟸   ENSRNOT00000160953
Ensembl Acc Id: ENSRNOP00000104999   ⟸   ENSRNOT00000158676
Protein Domains
Phosphatidylinositol transfer protein N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P53812-F1-model_v2 AlphaFold P53812 1-271 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698732
Promoter ID:EPDNEW_R9256
Type:multiple initiation site
Name:Pitpnb_1
Description:phosphatidylinositol transfer protein, beta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01251,341,716 - 51,341,776EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620143 AgrOrtholog
BioCyc Gene G2FUF-18839 BioCyc
Ensembl Genes ENSRNOG00000000665 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000052202 ENTREZGENE
  ENSRNOT00000052202.5 UniProtKB/Swiss-Prot
  ENSRNOT00000115325 ENTREZGENE
  ENSRNOT00000115325.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.530.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6888321 IMAGE-MGC_LOAD
InterPro PI_transfer UniProtKB/Swiss-Prot
  PI_transfer_N UniProtKB/Swiss-Prot
  START-like_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:114561 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72738 IMAGE-MGC_LOAD
NCBI Gene 114561 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL TRANSFER PROTEIN BETA ISOFORM UniProtKB/Swiss-Prot
  PTHR10658 UniProtKB/Swiss-Prot
Pfam IP_trans UniProtKB/Swiss-Prot
PhenoGen Pitpnb PhenoGen
PRINTS PITRANSFER UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000000665 RatGTEx
Superfamily-SCOP Bet v1-like UniProtKB/Swiss-Prot
UniProt A0A8I6ARL3_RAT UniProtKB/TrEMBL
  A0A8L2UMX1_RAT UniProtKB/TrEMBL
  A0ABK0LSJ5_RAT UniProtKB/TrEMBL
  A0ABK0LT87_RAT UniProtKB/TrEMBL
  A6J279 ENTREZGENE, UniProtKB/TrEMBL
  D3ZCD4 ENTREZGENE, UniProtKB/TrEMBL
  P53812 ENTREZGENE, UniProtKB/Swiss-Prot
  Q6P7S3 ENTREZGENE
UniProt Secondary Q6P7S3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-04   phosphatidylinositol transfer protein, beta  Pitpnb  phosphotidylinositol transfer protein, beta  Name updated 1299863 APPROVED
2004-02-26 Pitpnb  phosphotidylinositol transfer protein, beta      Symbol and Name status set to approved 625702 APPROVED
2002-08-07 Pitpnb  phosphotidylinositol transfer protein, beta      Symbol and Name status set to provisional 70820 PROVISIONAL