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Gene: Ncoa6 (nuclear receptor coactivator 6) Rattus norvegicus

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Symbol:

Ncoa6

Name:

nuclear receptor coactivator 6

RGD ID:

620111

Description:

Enables several functions, including identical protein binding activity; nuclear receptor binding activity; and peroxisome proliferator activated receptor binding activity. Involved in ovarian follicle development; positive regulation of insulin secretion involved in cellular response to glucose stimulus; and positive regulation of transcription by RNA polymerase II. Part of protein-containing complex. Biomarker of type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in breast cancer; colon cancer; and lung cancer. Orthologous to human NCOA6 (nuclear receptor coactivator 6); PARTICIPATES IN estrogen signaling pathway; glucocorticoid signaling pathway; retinoic acid signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

activating signal cointegrator 2; Aib3; amplified in breast cancer protein 3; ASC-2; cancer-amplified transcriptional coactivator ASC-2; NRC; nuclear receptor coactivator RAP250; nuclear receptor-activating protein, 250 kDa; peroxisome proliferator-activated receptor-interacting protein; PPAR-interacting protein; PRIP; RAP250; thyroid hormone receptor binding protein; thyroid hormone receptor-binding protein; Trbp

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NCOA6 (nuclear receptor coactivator 6)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ncoa6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ncoa6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NCOA6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NCOA6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ncoa6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NCOA6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NCOA6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ncoa6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ncoa6 (nuclear receptor coactivator 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NCOA6 (nuclear receptor coactivator 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Mus musculus (house mouse):	Ncoa6 (nuclear receptor coactivator 6)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)
Danio rerio (zebrafish):	ncoa6 (nuclear receptor coactivator 6)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ncoa6	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	ncoa6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	164,351,062 - 164,421,991 (-)	Ensembl				GRCr8
mRatBN7.2	3	143,890,896 - 143,961,916 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	143,890,896 - 143,952,268 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	147,757,713 - 147,797,978 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	156,374,984 - 156,415,249 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	154,114,516 - 154,154,781 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	150,919,317 - 150,990,391 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	150,919,317 - 150,960,030 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	157,287,434 - 157,358,499 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	145,886,874 - 145,957,928 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	142,616,753 - 142,657,466 (-)	NCBI		Celera
RGSC_v3.1	3	145,808,879 - 145,815,141 (-)	NCBI
Cytogenetic Map	3	q41-q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast cancer (ISO)

cardiomyopathy (ISO)

colon cancer (ISO)

dilated cardiomyopathy (ISS)

endometriosis (ISO)

lung cancer (ISO)

type 2 diabetes mellitus (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diethylstilbestrol (ISO)

enzyme inhibitor (ISO)

formaldehyde (ISO)

FR900359 (ISO)

GW 1929 (ISO)

indometacin (ISO)

methimazole (EXP)

methotrexate (ISO)

oxaliplatin (EXP)

paracetamol (EXP,ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

rifampicin (ISO)

sulfadimethoxine (EXP)

tamibarotene (ISO)

tamoxifen (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

topotecan (EXP)

Triptolide (EXP)

triptonide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (ISO)

chromatin organization (IEA)

DNA damage response (ISO)

DNA-templated transcription initiation (IEA,ISO)

heart development (ISO)

labyrinthine layer blood vessel development (ISO)

myeloid cell differentiation (IEA,ISO,ISS)

ovarian follicle development (IEP)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of insulin secretion involved in cellular response to glucose stimulus (IMP)

positive regulation of peptide secretion (IMP)

positive regulation of transcription by RNA polymerase II (IDA,IEA,ISO)

regulation of gene expression (ISO)

Cellular Component

histone methyltransferase complex (IEA,ISO)

MLL3/4 complex (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA,ISO)

protein-containing complex (IDA)

transcription regulator complex (ISO)

Molecular Function

chromatin binding (ISO)

chromatin-protein adaptor activity (ISO)

enzyme binding (IEA,ISO)

histone methyltransferase binding (ISO)

identical protein binding (IDA)

nuclear estrogen receptor binding (IPI)

nuclear glucocorticoid receptor binding (IPI)

nuclear retinoic acid receptor binding (IPI)

nuclear retinoid X receptor binding (IPI)

nuclear thyroid hormone receptor binding (IEA,IPI,ISO,ISS)

nuclear vitamin D receptor binding (IPI)

peroxisome proliferator activated receptor binding (IPI)

protein binding (IPI,ISO)

protein domain specific binding (IMP)

transcription coactivator activity (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

estrogen signaling pathway (IDA,ISO)

glucocorticoid signaling pathway (IDA)

histone modification pathway (ISO)

retinoic acid signaling pathway (IDA)

thyroid hormone signaling pathway (IDA)

vitamin D signaling pathway (IDA)

References

References - curated

#	Reference Title	Reference Citation
1.	Inactivation of the nuclear receptor coactivator RAP250 in mice results in placental vascular dysfunction.	Antonson P, etal., Mol Cell Biol 2003 Feb;23(4):1260-8.
2.	Trbp regulates heart function through microRNA-mediated Sox6 repression.	Ding J, etal., Nat Genet. 2015 Jul;47(7):776-83. doi: 10.1038/ng.3324. Epub 2015 Jun 1.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting.	Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
6.	Thyroid hormone receptor-binding protein, an LXXLL motif-containing protein, functions as a general coactivator.	Ko L, etal., Proc Natl Acad Sci U S A 2000 May 23;97(11):6212-7.
7.	A nuclear factor, ASC-2, as a cancer-amplified transcriptional coactivator essential for ligand-dependent transactivation by nuclear receptors in vivo.	Lee SK, etal., J Biol Chem. 1999 Nov 26;274(48):34283-93.
8.	Expression and localization of RAP250 mRNA in rat ovary: possible implications in follicular development and ovulation.	Liu DL, etal., Endocrine. 2002 Jul;18(2):173-8.
9.	A new family of nuclear receptor coregulators that integrate nuclear receptor signaling through CREB-binding protein.	Mahajan MA and Samuels HH, Mol Cell Biol 2000 Jul;20(14):5048-63.
10.	NRC-interacting factor 1 is a novel cotransducer that interacts with and regulates the activity of the nuclear hormone receptor coactivator NRC.	Mahajan MA, etal., Mol Cell Biol 2002 Oct;22(19):6883-94.
11.	Nuclear receptor coregulator (NRC): mapping of the dimerization domain, activation of p53 and STAT-2, and identification of the activation domain AD2 necessary for nuclear receptor signaling.	Mahajan MA, etal., Mol Endocrinol. 2007 Aug;21(8):1822-34. Epub 2007 May 29.
12.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
13.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
14.	GOA pipeline	RGD automated data pipeline
15.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
16.	The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis.	Shilatifard A Annu Rev Biochem. 2012;81:65-95. doi: 10.1146/annurev-biochem-051710-134100.
17.	Identification of a transcriptionally active peroxisome proliferator-activated receptor alpha -interacting cofactor complex in rat liver and characterization of PRIC285 as a coactivator.	Surapureddi S, etal., Proc Natl Acad Sci U S A 2002 Sep 3;99(18):11836-41.
18.	MicroRNA-208a Dysregulates Apoptosis Genes Expression and Promotes Cardiomyocyte Apoptosis during Ischemia and Its Silencing Improves Cardiac Function after Myocardial Infarction.	Tony H, etal., Mediators Inflamm. 2015;2015:479123. doi: 10.1155/2015/479123. Epub 2015 Nov 25.
19.	Regulation of insulin secretion and beta-cell mass by activating signal cointegrator 2.	Yeom SY, etal., Mol Cell Biol. 2006 Jun;26(12):4553-63.

Additional References at PubMed

PMID:10681503	PMID:10788465	PMID:11302752	PMID:11443112	PMID:12039952	PMID:12368298	PMID:12446761	PMID:17021013	PMID:17500065	PMID:21700703	PMID:22311984	PMID:23341457
PMID:29263199

Genomics

Comparative Map Data

Ncoa6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	164,351,062 - 164,421,991 (-)	Ensembl				GRCr8
mRatBN7.2	3	143,890,896 - 143,961,916 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	143,890,896 - 143,952,268 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	147,757,713 - 147,797,978 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	156,374,984 - 156,415,249 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	154,114,516 - 154,154,781 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	150,919,317 - 150,990,391 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	150,919,317 - 150,960,030 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	157,287,434 - 157,358,499 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	145,886,874 - 145,957,928 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	142,616,753 - 142,657,466 (-)	NCBI		Celera
RGSC_v3.1	3	145,808,879 - 145,815,141 (-)	NCBI
Cytogenetic Map	3	q41-q42	NCBI

NCOA6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	34,714,774 - 34,825,651 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	34,689,097 - 34,825,739 (-)	Ensembl			hg38	GRCh38
GRCh37	20	33,302,578 - 33,413,454 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	32,766,239 - 32,877,094 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	32,766,238 - 32,877,094	NCBI
Celera	20	30,051,663 - 30,162,529 (-)	NCBI		Celera
Cytogenetic Map	20	q11.22	NCBI
HuRef	20	30,081,569 - 30,192,220 (-)	NCBI		HuRef
CHM1_1	20	33,204,060 - 33,314,823 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	36,435,437 - 36,546,294 (-)	NCBI		T2T-CHM13v2.0

Ncoa6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	155,232,585 - 155,315,741 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	155,232,576 - 155,315,814 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	155,390,656 - 155,473,911 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	155,390,656 - 155,473,894 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	155,216,401 - 155,266,519 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	155,082,112 - 155,129,567 (-)	NCBI		MGSCv36	mm8
Celera	2	161,323,189 - 161,373,222 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	77.26	NCBI

Ncoa6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	26,564,037 - 26,632,675 (+)	Ensembl
ChiLan1.0	NW_004955422	26,564,535 - 26,639,516 (+)	NCBI	ChiLan1.0	ChiLan1.0

NCOA6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	40,448,796 - 40,559,276 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	40,441,963 - 40,552,376 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	31,044,339 - 31,154,798 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	32,170,583 - 32,247,167 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	32,170,583 - 32,247,167 (-)	Ensembl			panPan2	panpan1.1

NCOA6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	23,802,360 - 23,877,986 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	23,802,351 - 23,866,792 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	23,447,946 - 23,539,033 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	24,493,126 - 24,584,695 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	24,493,113 - 24,581,564 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	23,780,970 - 23,872,054 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	23,876,107 - 23,967,330 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	24,314,983 - 24,406,060 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ncoa6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	172,766,751 - 172,862,411 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	5,906,485 - 5,982,268 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	5,905,905 - 5,982,824 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NCOA6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	38,114,291 - 38,221,901 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	38,114,284 - 38,221,904 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	43,309,959 - 43,393,797 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NCOA6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	39,013,364 - 39,129,723 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	39,013,232 - 39,129,658 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	87,702,887 - 87,819,956 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ncoa6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624842	4,570,758 - 4,665,517 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ncoa6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	134,737,917 - 134,809,695 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ncoa6
289 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	272
Count of miRNA genes:	107
Interacting mature miRNAs:	112
Transcripts:	ENSRNOT00000024714, ENSRNOT00000074304
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161799493	176036425	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	141508991	166376254	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	160357340	167835660	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001276714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_591737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF176351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF228043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024714 ⟹ ENSRNOP00000024714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	164,351,062 - 164,402,702 (-)	Ensembl
mRatBN7.2 Ensembl	3	143,890,896 - 143,952,268 (-)	Ensembl
Rnor_6.0 Ensembl	3	150,919,317 - 150,960,030 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114206 ⟹ ENSRNOP00000093567

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	164,351,062 - 164,421,991 (-)	Ensembl
mRatBN7.2 Ensembl	3	143,894,869 - 143,952,268 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118396 ⟹ ENSRNOP00000097352

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	164,351,062 - 164,402,702 (-)	Ensembl
mRatBN7.2 Ensembl	3	143,890,896 - 143,952,268 (-)	Ensembl

RefSeq Acc Id:

NM_001276714 ⟹ NP_001263643

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,391,775 (-)	NCBI
mRatBN7.2	3	143,890,896 - 143,931,612 (-)	NCBI
Rnor_6.0	3	150,919,317 - 150,960,030 (-)	NCBI
Rnor_5.0	3	157,287,434 - 157,358,499 (-)	NCBI
Celera	3	142,616,753 - 142,657,466 (-)	NCBI

Sequence:

show sequence

ATGGTTTTGGATGACCTTCCAAACTTTGAAGACATCTATACTTCCTTGTGTTCATCAACAATGG
GAGACTCAGAGGTGGAGTTTGACTCTGGACTAGAAGATGATGACACAAAAAGTGATAGTATTTT
GGAGGATTCTACAATTTTTGTAGCCTTCAAAGGAAATATAGATGATAAAGACTTCAAATGGAAA
CTGGATACAATCTTACAGAGTGTGCCCGGCTTGTTACACATGGAATCCAGCAAGCTGAAGGTAC
AGAAAGTGGAGCCCTGGAACAGCGTGCGAGTCACATTCAACATCCCCCGGGAAGCAGCAGAGCG
GTTACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTCGGGATCTGGGGATTCTCTCCGTTCAG
ATTGAAGGGGAAGGTGCTATCAACCTGGCTTTGGGTCAGAACCGAAGCCAAGACGTGAGAATGA
ATGGACCCGTGGTATCTGGAAATTCCGTTAGGATGGAGGCAGGATTTCCCATGGCAAGTGGTCC
AGGACTAATAAGAATGACAAGCCCTGCCACTGTTATGATGCCCCAGGGCGGGAACGCATCATCT
TCCATGATGGCACCAGGCCCCAATCCAGAACTGCAACCCAGGACTCCTCGCCCTGCTTCTCAGT
CAGATGCGATGGATCCACTTCTCTCTGGACTCCATATACAGCAACAGAGTCATCCCTCAGGATC
TTTACCTCCAGCGCATCACCCAATGCAACCTGTTCCTGTGAACAGACAAATGAACCCAGCTAAT
TTTCCCCAGCTGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCAACAGTTGCAGACTAGACCTTTACAACAACATCAGCAGCAACAGCCACAGGGGATTCG
ACCACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCCAGGCTGGAACCAGCTGCCTTCTGGA
GCCTTACAGCCTCCACCAGCCCAGGGATCTCTGGGCCCAATGACTACAAATCAAGGGTGGAAGA
AGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTTCAGGCAAGACCTTCCTTAGCCACGGTACA
GACACCTTCTCACCCTCCCCCTCCTTATCCTTTTGGCAGCCAACAAGCCTCACAAGCCCATACA
AACTTTCCTCAAATGAGCAACCCAGGCCAGTTCACAGCTCCTCAGATGAAGAGCTTGCAGGGAG
GACCCTCCAGGGTCCCAACCCCCCTGCAACAGCCCCACCTCACCAACAAGTCTCCTGCCTCCTC
ACCCTCCTCCTTCCAGCAGGGATCCCCTGCATCCTCCCCAACGGTTAACCAAACTCAGCAGCAG
ATGGGACCAAGGCCACCTCAAAATAACCCACTTTCCCAGGGATTTCAGCAGCCTGTCAGCTCTC
CGGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACCTAACTTCATGGTGATGCAGCAGCA
GCCACCAAGCCAGGGGCCACCGAGTTTACACCCAGGCCTAGGAGGAATGCCTAAACGCCTCCCA
CCTGGCTTCTCAGCAGGACAGGCCAATCCCAACTTTATGCAAGGTCAGGTGCCTTCCACCACAG
CAGCCACCCCTGGGAATTCAGGAGCCCTTCAGCTGCAAGCAAATCAAAGTGTCCAGCATGCAGG
TGGTCAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTGTCTCACGGGCCACCAAATATGATG
CAACCCAGCCTCATGGGAATTCATGGCAACATAAACAACCAGCAGGCTGGTAGCTCTGGGGTTC
CTCAGGTGACCCTGGGCAGCATGCAAGGCCAGCCCCAGCAGGGCCCACCATCTCAGCTAATGGG
CATGCACCAACAGATTGTGCCCTCACAGGGCCAAATGGCCCAGCAGCAAGGAACTTTGAACCCT
CAAAACCCTATGATCCTTTCAAGGGCCCAGCTTATGCCACAGGGCCAGATGATGGTGAACGCTC
AGAACCAAAATCTTGGACCTTCACCCCAAAGGATGACCCCACCCAAGCAGATGCTTCCCCAGCA
GGGCCCACAAATGATGGCGCCACATAACCAGATGATGGGGCCTCAGGGGCAAGTGTTGCTCCAG
CAGAATCCAATGATAGAGCAAATAATGACCAATCAGATGCAGGGGAATAAGGCGCAATTTAATT
CTCAGAACCAATCCAACGTCATGCCGGGACCAGCACAGATAATGAGGGGACCAACTCCTAACAT
GCAAGGAAACATGGTGCAATTCACAGGACAGATGTCAGGACAGATGCTGCCTCAGCAAGGGCCT
GTGAGCAACAGTCCATCTCAGGTTATGGGGATTCAGGGGCAGGTTCTGCGGCCACCAGGACCCA
GCCCACACATGGCCCAGCAACATACTGATCCTGCTACTACAGCAAATAATGATGTCAACTTGTC
TCAGATGATGCCTGATGTTAGCATGCAACAAACCAGCATGGTCCCTCCACATGTGCAGAGCATG
CAGGGAAACAGTGCTTCGGGAAGCCACTTCTCAGGCCATGGAGTGTCTTTCAATGCACCATTCG
GTGGTGCACCCAATGGAACTCAGATGTCTTGTGGTCAAAATCCAGGCTTTCCAGTAAATAAGGA
TGTAACGTTAACAAGCCCATTGTTGGTCAACTTACTGCAAAGTGACATTTCAGCAGGTCATTTT
GGCGTAAACAATAAACAAAATAATACCAACGCGAATAAACAGAAGAAGAAGAAACCACCGCGGA
AGAAGAAAAATTGTCACCAGGATCTAAACACCCCAGATAGTCGTCCAGCTGGTCTAGAGGAAGT
TGATCAACAGTCATTACCTGGAGAACAAGGAATCAATTTGGACAACACAGGCCCTAAACTGCCA
GACTTTTCAAACCGGCCACCAGGTTATCCTACACAACCAGTTGAACAGAGGCCACTGCAGCAGA
TGCCTCCTCAACTCATGCAGCATGTGGCACCCCCACCACAGCCACCACAGCAGCAGCCACAACC
ACAACTGCCTCAACAGCAGCCACAGCCGCAGCCACCACCACCTAGTCAGCCACAGTCGCAGCAG
CAGCAGCAGCAGATGATGATGATGCTCATGATGCAGCAAGATCCCAAATCCATTAGGCTTCCGG
TCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCCAGACTCCCAAAGAGTGCCCATGCA
ACAGAGTGGCAATGTGCCTGTCATGGTTAGTTTGCAAGGACCTGCCTCTGTGCCACCGTCACCT
GATAAACAAAGGATGCCAATGCCTGTGAATACTCCGCTGGGAAGTAATTCAAGAAAGATGGTAT
ACCAGGAGAGCCCACAGAATTCCAGCTCACCACTAGGAGAGATGCCCTCACTTCCTGAAGCTGG
TGGCAGTGAAGTACCATCTGTTTCAGGAGGCCCAAGTAACATGCCCTCGCATTTAGTAGTTTCT
CAGAATCAATTAATGATGACAGGACCCAAACCTGGACCATCTCCCCTTTCAGCAACTCAAGGTG
CAACTCCCCAGCAGCCTCCTGTAAACTCCTTGCCTAGTTCCCATGGCCACCACTTTCCAAATGT
GGCTGCACCAACCCAAACATCTAGGCCTAAAACACCAAACAGAGCCAGCCCCAGACCCTATTAT
CCTCAGACGCCCAACAACCGCCCTCCTAGCACAGAACCTTCAGAAATCAGTCTCTCTCCAGAAA
GACTCAATGCTTCCATAGCAGGACTCTTCCCTCCACAGATTAATATTCCTTTACCTCCCAGGCC
AAACTTAAATAGGGGCTTTGATCAACAGGGCTTAAATCCAACAACTCTGAAGGCCATTGGGCAA
GCACCTTCAAATCTCACTGTAAGTAATCCTCCTAACTTTGCTGCCCCACAAGCTCATAAATTAG
ATTCTGTGGTGGTGAGTTCTGGAAAACAGTCTAATCCTGGAACAACAAAACGGGCAAGTCCAAG
CAACAGTCGCAGGTCTAGTCCGGGGTCCAGTAGAAAGACTACCCCAAGTCCTGGAAGGCAAAAT
TCAAAAGCCCCTAAACTTACTCTGGCTTCTCAAACAAGCACAACCCTGTTGCAGAACATGGAGC
TGCCTAGAAATGTGTTGGTTGGTCCCACTCCACTTGCCAATCCCCCTTTATCTGGAAGCTTTCC
TAACAATAATGGGCTTAATTCCCAGAATCCCACCGTGCCTGCGCCTGCAGTGGGGACTGTTGTT
GAGGATAACAAAGAGAGCTTGAATGTTCCTCAGGACAGTGATTGCCAGAATTCCCAGGGGAGGA
AGGAACAGGTAAACACTGAGCTGAAAGCAGTCCCTATCCAAGAAGCTAAAATGGTTGTCCCCGA
AGATCAGTCCAAAAAGGATGGGCAACCTTTGGATCCTAACAAACTCCCCAGTGTAGAAGAGAAC
AAAACTTTGATGTCTCCTGCCATGAGAGAAGCACCAACATCACTAAGCCAACTTCTCGACAACT
CTGGAGCTCCTAATGTGACCATTAAACCCCCTGGGCTTACAGATCTGGAAGTAACACCTCCAGC
AGTTTCAGGAGAGGACCTCAAAAAAGCATCTGTCATTCCCACACTGCAGGATCCGTCTTCTAAA
GAACCCTCTAATTCTTTAAACTTACCTCACAGTAACGAGCCGTGTTCAACCCTTGCGCATCCAG
AATTGAGTGAGGTCAGCTCAAACATTGCACCAAGCATCCCTCCAGTAATGTCAAGACCTGTCAG
CTCTTCCTCCATTTCTACTCCCTTACCCCCAAACCAAATAACTGTATTTGTTACTTCCAACCCC
ATAACCACTTCATCTAACACATCAGCAGCCCTGCCAACTCACTTGCAGTCTGCATTGATGTCGA
CAGTCGTCACGATGCCCAACGTGGGTAACAAAGTTATGGTTTCTGAGGGACAGTCAGCTGCTCA
ATCTAATGCCCGGCCTCAGTTCATTACACCTGTCTTTATCAATTCATCTTCAATAATTCAGGTT
ATGAAAGGATCACAGCCAAGCACAATCCCTGCAACCCCATTGACAACCAACAGTGGCCTGATGC
CTCCCTCTGTCGCAGTTGTTGGACCTTTACACATACCTCAGAACATAAAATTTTCTTCAGCTCC
TGTAACACCTAATGTCCCCTCCAGTAGTCCTGCTCCAAATATACAGACAGGTCGGCCATTGGTC
CTTAGCTCACGAGCCACTCCTGTTCCGCTGCCTTCCCCTCCTTGTACATCCTCTCCAGTCGTCG
CTCCTAATCCTTCTGTCCAGCAAGTAAAAGAATTAAATCCAGATGAGGCTAGTCCTCAGACGAA
CACCTCAGCAGACCAGAGCACTCTGCCTTCTTCACAACCAACCACAGTAGTTTCTCCCCTTTTG
GCCAATAGTCCAGGCTCCTCTGCCAATCGGCGAAGCCCAGTCTCATCCAGTAAGGGCAAAGGAA
AAGTGGACAAAATTGGCCAGATTTTGCTGACCAAAGCTTGTAAGAAAGTTACAGGCTCTCTGGA
GAAAGGGGAAGAACAGTATGGTGCAGATGGAGAAACTGAAGGCCCAGGGCTAGAGACCACAACT
CCTGGGCTAATGGGAACAGAGCAGTGCTCCACAGAGCTGGACAGTAAAACCCCAACACCCTCAG
CACCCACTCTCCTAAAAATGACCTCTAGCCCCATGGGCCCAAGCTCCACCTCAACAGGACCCAT
CTTACCTGGCGGTGCTCTTCCCACCAGTGTACGCTCTGTAGTAACCACATTGGTACCCTCTGAG
CTCATCTCCACAGCGCCAACCACAAAAGGCAATCATGGTGGGATAACATCTGAGCCACTTGCAG
GTGGCCTAGTGGAGGAGAAGGTGGGATCCCATCCAGAGCTTCTACCCAGCATAGCCCCTTCACA
GACTTTAGTCCCAAAGGAATCTCCAGCCACAGCACTGCAGGGCTCTGTTGGCAGACCAGAACTT
GAGGCAAATGCTGCCATAGCCTCTGGACAAAGCAGTGAGCCAAAAGAGACAGTTGAGAAGTCCA
AAACCCCCAGCCGAAGAAACTCTCGAACTGAGGAGCCAACTATGGCTTCTGAGAATGTGGAAAA
TGGACATCGAAAAAGATCTTCTCGACCTGCTTCAGCCTCCAGCTCTACTAAAGATATAACTGGT
GCAGTGCAATCTAAGCGAAGAAAATCCAAGTAAGCAAGCAGGAAGATGACTTGATACTTGTAAA
TGTTTGTGAATTTTACAAAGAGCAATTTTCAGCTGTGACTTTTTAAATCTATTTCTGTACAGTC
AGTCATTTTAATAACGTAATGACGCGGTCCTTTTCCTAATCCCTAAAACCTGTCTCATAAAGTG
TAATGGGGAGCAGCCCTTTTGGTGTTGCAAAATGAAGTTCAAGGCTTCTAAAATGTTGCCATGT
ATTGAAAGGAGCTAATGCCATTGTAAATGTTATTAGTTTCACATTTCTTGAGCAGCCTAGAGTA
CAGGGTGAACATTTGTAGATCTTGTAATGATGTATTGTGCTGTGGAAGTACTGTGTGTGAATAG
CAGTAGTGGGGCAAAAAGCAATCTTGTCATTTGGAAATGTAAATAATTTTATTATATAGTGTTT
TGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAGAATCTAAGGGTTTGTACAATGTGA
AATACTGAACGTGTTAAATAAATGTCTTTGTCATAGAA

hide sequence

RefSeq Acc Id:

XM_006235296 ⟹ XP_006235358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI
mRatBN7.2	3	143,890,896 - 143,961,914 (-)	NCBI
Rnor_6.0	3	150,919,317 - 150,990,391 (-)	NCBI
Rnor_5.0	3	157,287,434 - 157,358,499 (-)	NCBI

Sequence:

show sequence

CCGGTCCGGCCCATCCCCCCCCCTCCCCACCGGCTCCCTGAGGCCCTGCCGGGTCGGGCTGCGG
GCGGCCGGGCGCCGACGGCCGGACAGACGGGCACACAACGAGGAAGGGCGGACGGACGCGCCGA
GGGCGCTGGGCACGCACGGCCCGGGCCGGCGCTGCGAGGCCCGCCCGGGAGGGCCGGGGCCGCG
CTCAGAACTCTGATTTGGCTGCTACTTTGACATATAAGCCCTGAAGATGCCACCGTGCTTGGAC
TTAGAGGATGATCTGGATAAGTGAGAAAAGTTAAGGCATTTTGGTTTTCTTACTGTTCACTTTG
CATATACTTCTGGACTAATACACCATGGTTTTGGATGACCTTCCAAACTTTGAAGACATCTATA
CTTCCTTGTGTTCATCAACAATGGGAGACTCAGAGGTGGAGTTTGACTCTGGACTAGAAGATGA
TGACACAAAAAGTGATAGTATTTTGGAGGATTCTACAATTTTTGTAGCCTTCAAAGGAAATATA
GATGATAAAGACTTCAAATGGAAACTGGATACAATCTTACAGAGTGTGCCCGGCTTGTTACACA
TGGAATCCAGCAAGCTGAAGGTACAGAAAGTGGAGCCCTGGAACAGCGTGCGAGTCACATTCAA
CATCCCCCGGGAAGCAGCAGAGCGGTTACGGATCCTGGCTCAGAGCAACAACCAGCAGCTTCGG
GATCTGGGGATTCTCTCCGTTCAGATTGAAGGGGAAGGTGCTATCAACCTGGCTTTGGGTCAGA
ACCGAAGCCAAGACGTGAGAATGAATGGACCCGTGGTATCTGGAAATTCCGTTAGGATGGAGGC
AGGATTTCCCATGGCAAGTGGTCCAGGACTAATAAGAATGACAAGCCCTGCCACTGTTATGATG
CCCCAGGGCGGGAACGCATCATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTGCAACCCA
GGACTCCTCGCCCTGCTTCTCAGTCAGATGCGATGGATCCACTTCTCTCTGGACTCCATATACA
GCAACAGAGTCATCCCTCAGGATCTTTACCTCCAGCGCATCACCCAATGCAACCTGTTCCTGTG
AACAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAACAGCAGCAGCAACAGCAGCAGC
AGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGTTGCAGACTAGACCTTTACAACAACATCA
GCAGCAACAGCCACAGGGGATTCGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTTCCTCCA
GGCTGGAACCAGCTGCCTTCTGGAGCCTTACAGCCTCCACCAGCCCAGGGATCTCTGGGCCCAA
TGACTACAAATCAAGGGTGGAAGAAGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTTCAGGC
AAGACCTTCCTTAGCCACGGTACAGACACCTTCTCACCCTCCCCCTCCTTATCCTTTTGGCAGC
CAACAAGCCTCACAAGCCCATACAAACTTTCCTCAAATGAGCAACCCAGGCCAGTTCACAGCTC
CTCAGATGAAGAGCTTGCAGGGAGGACCCTCCAGGGTCCCAACCCCCCTGCAACAGCCCCACCT
CACCAACAAGTCTCCTGCCTCCTCACCCTCCTCCTTCCAGCAGGGATCCCCTGCATCCTCCCCA
ACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTTTCCCAGG
GATTTCAGCAGCCTGTCAGCTCTCCGGGTCGGAATCCTATGGTTCAACAGGGAAATGTGCCACC
TAACTTCATGGTGATGCAGCAGCAGCCACCAAGCCAGGGGCCACCGAGTTTACACCCAGGCCTA
GGAGGAATGCCTAAACGCCTCCCACCTGGCTTCTCAGCAGGACAGGCCAATCCCAACTTTATGC
AAGGTCAGGTGCCTTCCACCACAGCAGCCACCCCTGGGAATTCAGGAGCCCTTCAGCTGCAAGC
AAATCAAAGTGTCCAGCATGCAGGTGGTCAAGGAGCTGGTCCTCCTCAAAACCAGATGCAGGTG
TCTCACGGGCCACCAAATATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAACAACC
AGCAGGCTGGTAGCTCTGGGGTTCCTCAGGTGACCCTGGGCAGCATGCAAGGCCAGCCCCAGCA
GGGCCCACCATCTCAGCTAATGGGCATGCACCAACAGATTGTGCCCTCACAGGGCCAAATGGCC
CAGCAGCAAGGAACTTTGAACCCTCAAAACCCTATGATCCTTTCAAGGGCCCAGCTTATGCCAC
AGGGCCAGATGATGGTGAACGCTCAGAACCAAAATCTTGGACCTTCACCCCAAAGGATGACCCC
ACCCAAGCAGATGCTTCCCCAGCAGGGCCCACAAATGATGGCGCCACATAACCAGATGATGGGG
CCTCAGGGGCAAGTGTTGCTCCAGCAGAATCCAATGATAGAGCAAATAATGACCAATCAGATGC
AGGGGAATAAGGCGCAATTTAATTCTCAGAACCAATCCAACGTCATGCCGGGACCAGCACAGAT
AATGAGGGGACCAACTCCTAACATGCAAGGAAACATGGTGCAATTCACAGGACAGATGTCAGGA
CAGATGCTGCCTCAGCAAGGGCCTGTGAGCAACAGTCCATCTCAGGTTATGGGGATTCAGGGGC
AGGTTCTGCGGCCACCAGGACCCAGCCCACACATGGCCCAGCAACATACTGATCCTGCTACTAC
AGCAAATAATGATGTCAACTTGTCTCAGATGATGCCTGATGTTAGCATGCAACAAACCAGCATG
GTCCCTCCACATGTGCAGAGCATGCAGGGAAACAGTGCTTCGGGAAGCCACTTCTCAGGCCATG
GAGTGTCTTTCAATGCACCATTCGGTGGTGCACCCAATGGAACTCAGATGTCTTGTGGTCAAAA
TCCAGGCTTTCCAGTAAATAAGGATGTAACGTTAACAAGCCCATTGTTGGTCAACTTACTGCAA
AGTGACATTTCAGCAGGTCATTTTGGCGTAAACAATAAACAAAATAATACCAACGCGAATAAAC
AGAAGAAGAAGAAACCACCGCGGAAGAAGAAAAATTGTCACCAGGATCTAAACACCCCAGATAG
TCGTCCAGCTGGTCTAGAGGAAGTTGATCAACAGTCATTACCTGGAGAACAAGGAATCAATTTG
GACAACACAGGCCCTAAACTGCCAGACTTTTCAAACCGGCCACCAGGTTATCCTACACAACCAG
TTGAACAGAGGCCACTGCAGCAGATGCCTCCTCAACTCATGCAGCATGTGGCACCCCCACCACA
GCCACCACAGCAGCAGCCACAACCACAACTGCCTCAACAGCAGCCACAGCCGCAGCCACCACCA
CCTAGTCAGCCACAGTCGCAGCAGCAGCAGCAGCAGATGATGATGATGCTCATGATGCAGCAAG
ATCCCAAATCCATTAGGCTTCCGGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTGAACCC
AGACTCCCAAAGAGTGCCCATGCAACAGAGTGGCAATGTGCCTGTCATGGTTAGTTTGCAAGGA
CCTGCCTCTGTGCCACCGTCACCTGATAAACAAAGGATGCCAATGCCTGTGAATACTCCGCTGG
GAAGTAATTCAAGAAAGATGGTATACCAGGAGAGCCCACAGAATTCCAGCTCACCACTAGGAGA
GATGCCCTCACTTCCTGAAGCTGGTGGCAGTGAAGTACCATCTGTTTCAGGAGGCCCAAGTAAC
ATGCCCTCGCATTTAGTAGTTTCTCAGAATCAATTAATGATGACAGGACCCAAACCTGGACCAT
CTCCCCTTTCAGCAACTCAAGGTGCAACTCCCCAGCAGCCTCCTGTAAACTCCTTGCCTAGTTC
CCATGGCCACCACTTTCCAAATGTGGCTGCACCAACCCAAACATCTAGGCCTAAAACACCAAAC
AGAGCCAGCCCCAGACCCTATTATCCTCAGACGCCCAACAACCGCCCTCCTAGCACAGAACCTT
CAGAAATCAGTCTCTCTCCAGAAAGACTCAATGCTTCCATAGCAGGACTCTTCCCTCCACAGAT
TAATATTCCTTTACCTCCCAGGCCAAACTTAAATAGGGGCTTTGATCAACAGGGCTTAAATCCA
ACAACTCTGAAGGCCATTGGGCAAGCACCTTCAAATCTCACTGTAAGTAATCCTCCTAACTTTG
CTGCCCCACAAGCTCATAAATTAGATTCTGTGGTGGTGAGTTCTGGAAAACAGTCTAATCCTGG
AACAACAAAACGGGCAAGTCCAAGCAACAGTCGCAGGTCTAGTCCGGGGTCCAGTAGAAAGACT
ACCCCAAGTCCTGGAAGGCAAAATTCAAAAGCCCCTAAACTTACTCTGGCTTCTCAAACAAGCA
CAACCCTGTTGCAGAACATGGAGCTGCCTAGAAATGTGTTGGTTGGTCCCACTCCACTTGCCAA
TCCCCCTTTATCTGGAAGCTTTCCTAACAATAATGGGCTTAATTCCCAGAATCCCACCGTGCCT
GCGCCTGCAGTGGGGACTGTTGTTGAGGATAACAAAGAGAGCTTGAATGTTCCTCAGGACAGTG
ATTGCCAGAATTCCCAGGGGAGGAAGGAACAGGTAAACACTGAGCTGAAAGCAGTCCCTATCCA
AGAAGCTAAAATGGTTGTCCCCGAAGATCAGTCCAAAAAGGATGGGCAACCTTTGGATCCTAAC
AAACTCCCCAGTGTAGAAGAGAACAAAACTTTGATGTCTCCTGCCATGAGAGAAGCACCAACAT
CACTAAGCCAACTTCTCGACAACTCTGGAGCTCCTAATGTGACCATTAAACCCCCTGGGCTTAC
AGATCTGGAAGTAACACCTCCAGCAGTTTCAGGAGAGGACCTCAAAAAAGCATCTGTCATTCCC
ACACTGCAGGATCCGTCTTCTAAAGAACCCTCTAATTCTTTAAACTTACCTCACAGTAACGAGC
CGTGTTCAACCCTTGCGCATCCAGAATTGAGTGAGGTCAGCTCAAACATTGCACCAAGCATCCC
TCCAGTAATGTCAAGACCTGTCAGCTCTTCCTCCATTTCTACTCCCTTACCCCCAAACCAAATA
ACTGTATTTGTTACTTCCAACCCCATAACCACTTCATCTAACACATCAGCAGCCCTGCCAACTC
ACTTGCAGTCTGCATTGATGTCGACAGTCGTCACGATGCCCAACGTGGGTAACAAAGTTATGGT
TTCTGAGGGACAGTCAGCTGCTCAATCTAATGCCCGGCCTCAGTTCATTACACCTGTCTTTATC
AATTCATCTTCAATAATTCAGGTTATGAAAGGATCACAGCCAAGCACAATCCCTGCAACCCCAT
TGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTGTTGGACCTTTACACATACCTCA
GAACATAAAATTTTCTTCAGCTCCTGTAACACCTAATGTCCCCTCCAGTAGTCCTGCTCCAAAT
ATACAGACAGGTCGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTTCCGCTGCCTTCCCCTC
CTTGTACATCCTCTCCAGTCGTCGCTCCTAATCCTTCTGTCCAGCAAGTAAAAGAATTAAATCC
AGATGAGGCTAGTCCTCAGACGAACACCTCAGCAGACCAGAGCACTCTGCCTTCTTCACAACCA
ACCACAGTAGTTTCTCCCCTTTTGGCCAATAGTCCAGGCTCCTCTGCCAATCGGCGAAGCCCAG
TCTCATCCAGTAAGGGCAAAGGAAAAGTGGACAAAATTGGCCAGATTTTGCTGACCAAAGCTTG
TAAGAAAGTTACAGGCTCTCTGGAGAAAGGGGAAGAACAGTATGGTGCAGATGGAGAAACTGAA
GGCCCAGGGCTAGAGACCACAACTCCTGGGCTAATGGGAACAGAGCAGTGCTCCACAGAGCTGG
ACAGTAAAACCCCAACACCCTCAGCACCCACTCTCCTAAAAATGACCTCTAGCCCCATGGGCCC
AAGCTCCACCTCAACAGGACCCATCTTACCTGGCGGTGCTCTTCCCACCAGTGTACGCTCTGTA
GTAACCACATTGGTACCCTCTGAGCTCATCTCCACAGCGCCAACCACAAAAGGCAATCATGGTG
GGATAACATCTGAGCCACTTGCAGGTGGCCTAGTGGAGGAGAAGGTGGGATCCCATCCAGAGCT
TCTACCCAGCATAGCCCCTTCACAGACTTTAGTCCCAAAGGAATCTCCAGCCACAGCACTGCAG
GGCTCTGTTGGCAGACCAGAACTTGAGGCAAATGCTGCCATAGCCTCTGGACAAAGCAGTGAGC
CAAAAGAGACAGTTGAGAAGTCCAAAACCCCCAGCCGAAGAAACTCTCGAACTGAGGAGCCAAC
TATGGCTTCTGAGAATGTGGAAAATGGACATCGAAAAAGATCTTCTCGACCTGCTTCAGCCTCC
AGCTCTACTAAAGATATAACTGGTGCAGTGCAATCTAAGCGAAGAAAATCCAAGTAAGCAAGCA
GGAAGATGACTTGATACTTGTAAATGTTTGTGAATTTTACAAAGAGCAATTTTCAGCTGTGACT
TTTTAAATCTATTTCTGTACAGTCAGTCATTTTAATAACGTAATGACGCGGTCCTTTTCCTAAT
CCCTAAAACCTGTCTCATAAAGTGTAATGGGGAGCAGCCCTTTTGGTGTTGCAAAATGAAGTTC
AAGGCTTCTAAAATGTTGCCATGTATTGAAAGGAGCTAATGCCATTGTAAATGTTATTAGTTTC
ACATTTCTTGAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTGTAATGATGTATTGTGC
TGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAAGCAATCTTGTCATTTGGAAATGT
AAATAATTTTATTATATAGTGTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATAAAGAG
AATCTAAGGGTTTGTACAATGTGAAATACTGAACGTGTTAAATAAATGTCTTTGTCATAGAA

hide sequence

RefSeq Acc Id:

XM_008762295 ⟹ XP_008760517

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,076 (-)	NCBI
mRatBN7.2	3	143,890,930 - 143,961,916 (-)	NCBI
Rnor_6.0	3	150,919,317 - 150,990,391 (-)	NCBI

Sequence:

show sequence

CCGGTCCGGCCCATCCCCCCCCCTCCCCACCGGCTCCCTGAGGCCCTGCCGGGTCGGGCTGCGG
GCGGCCGGGCGCCGACGGCCGGACAGACGGGCACACAACGAGGAAGGGCGGACGGACGCGCCGA
GGGCGCTGGGCACGCACGGCCCGGGCCGGCGCTGCGAGGCCCGCCCGGGAGGGCCGGGGCCGCG
CTCAGGTCCTGGGAGGAATGGAGAGGGGTCCTATTGACTACCTTCTCTGAGAGTGGTCAGAGAA
TTCTTAACAGAACTCTGATTTGGCTGCTACTTTGACATATAAGCCCTGAAGATGCCACCGTGCT
TGGACTTAGAGGATGATCTGGATAAGTGAGAAAAGTTAAGGCATTTTGGTTTTCTTACTGTTCA
CTTTGCATATACTTCTGGACTAATACACCATGGTTTTGGATGACCTTCCAAACTTTGAAGACAT
CTATACTTCCTTGTGTTCATCAACAATGGGAGACTCAGAGGTGGAGTTTGACTCTGGACTAGAA
GATGATGACACAAAAAGTGATAGTATTTTGGAGGATTCTACAATTTTTGTAGCCTTCAAAGGAA
ATATAGATGATAAAGACTTCAAATGGAAACTGGATACAATCTTACAGAGTGTGCCCGGCTTGTT
ACACATGGAATCCAGCAAGCTGAAGGTACAGAAAGTGGAGCCCTGGAACAGCGTGCGAGTCACA
TTCAACATCCCCCGGGAAGCAGCAGAGCGGTTACGGATCCTGGCTCAGAGCAACAACCAGCAGC
TTCGGGATCTGGGGATTCTCTCCGTTCAGATTGAAGGGGAAGGTGCTATCAACCTGGCTTTGGG
TCAGAACCGAAGCCAAGACGTGAGAATGAATGGACCCGTGGTATCTGGAAATTCCGTTAGGATG
GAGGCAGGATTTCCCATGGCAAGTGGTCCAGGACTAATAAGAATGACAAGCCCTGCCACTGTTA
TGATGCCCCAGGGCGGGAACGCATCATCTTCCATGATGGCACCAGGCCCCAATCCAGAACTGCA
ACCCAGGACTCCTCGCCCTGCTTCTCAGTCAGATGCGATGGATCCACTTCTCTCTGGACTCCAT
ATACAGCAACAGAGTCATCCCTCAGGATCTTTACCTCCAGCGCATCACCCAATGCAACCTGTTC
CTGTGAACAGACAAATGAACCCAGCTAATTTTCCCCAGCTGCAGCAACAGCAGCAGCAACAGCA
GCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGTTGCAGACTAGACCTTTACAACAA
CATCAGCAGCAACAGCCACAGGGGATTCGACCACAGTTTACTGCTCCAACTCAGGTGCCTGTTC
CTCCAGGCTGGAACCAGCTGCCTTCTGGAGCCTTACAGCCTCCACCAGCCCAGGGATCTCTGGG
CCCAATGACTACAAATCAAGGGTGGAAGAAGGCTCCCTTGCCTAGCCCAATGCAAGCGCAACTT
CAGGCAAGACCTTCCTTAGCCACGGTACAGACACCTTCTCACCCTCCCCCTCCTTATCCTTTTG
GCAGCCAACAAGCCTCACAAGCCCATACAAACTTTCCTCAAATGAGCAACCCAGGCCAGTTCAC
AGCTCCTCAGATGAAGAGCTTGCAGGGAGGACCCTCCAGGGTCCCAACCCCCCTGCAACAGCCC
CACCTCACCAACAAGTCTCCTGCCTCCTCACCCTCCTCCTTCCAGCAGGGATCCCCTGCATCCT
CCCCAACGGTTAACCAAACTCAGCAGCAGATGGGACCAAGGCCACCTCAAAATAACCCACTTTC
CCAGGGATTTCAGCAGCCTGTCAGCTCTCCGGGTCGGAATCCTATGGTTCAACAGGGAAATGTG
CCACCTAACTTCATGGTGATGCAGCAGCAGCCACCAAGCCAGGGGCCACCGAGTTTACACCCAG
GCCTAGGAGGAATGCCTAAACGCCTCCCACCTGGCTTCTCAGCAGGACAGGCCAATCCCAACTT
TATGCAAGGTCAGGTGCCTTCCACCACAGCAGCCACCCCTGGGAATTCAGGAGCCCTTCAGCTG
CAAGCAAATCAAAGTGTCCAGCATGCAGGTGGTCAAGGAGCTGGTCCTCCTCAAAACCAGATGC
AGGTGTCTCACGGGCCACCAAATATGATGCAACCCAGCCTCATGGGAATTCATGGCAACATAAA
CAACCAGCAGGCTGGTAGCTCTGGGGTTCCTCAGGTGACCCTGGGCAGCATGCAAGGCCAGCCC
CAGCAGGGCCCACCATCTCAGCTAATGGGCATGCACCAACAGATTGTGCCCTCACAGGGCCAAA
TGGCCCAGCAGCAAGGAACTTTGAACCCTCAAAACCCTATGATCCTTTCAAGGGCCCAGCTTAT
GCCACAGGGCCAGATGATGGTGAACGCTCAGAACCAAAATCTTGGACCTTCACCCCAAAGGATG
ACCCCACCCAAGCAGATGCTTCCCCAGCAGGGCCCACAAATGATGGCGCCACATAACCAGATGA
TGGGGCCTCAGGGGCAAGTGTTGCTCCAGCAGAATCCAATGATAGAGCAAATAATGACCAATCA
GATGCAGGGGAATAAGGCGCAATTTAATTCTCAGAACCAATCCAACGTCATGCCGGGACCAGCA
CAGATAATGAGGGGACCAACTCCTAACATGCAAGGAAACATGGTGCAATTCACAGGACAGATGT
CAGGACAGATGCTGCCTCAGCAAGGGCCTGTGAGCAACAGTCCATCTCAGGTTATGGGGATTCA
GGGGCAGGTTCTGCGGCCACCAGGACCCAGCCCACACATGGCCCAGCAACATACTGATCCTGCT
ACTACAGCAAATAATGATGTCAACTTGTCTCAGATGATGCCTGATGTTAGCATGCAACAAACCA
GCATGGTCCCTCCACATGTGCAGAGCATGCAGGGAAACAGTGCTTCGGGAAGCCACTTCTCAGG
CCATGGAGTGTCTTTCAATGCACCATTCGGTGGTGCACCCAATGGAACTCAGATGTCTTGTGGT
CAAAATCCAGGCTTTCCAGTAAATAAGGATGTAACGTTAACAAGCCCATTGTTGGTCAACTTAC
TGCAAAGTGACATTTCAGCAGGTCATTTTGGCGTAAACAATAAACAAAATAATACCAACGCGAA
TAAACAGAAGAAGAAGAAACCACCGCGGAAGAAGAAAAATTGTCACCAGGATCTAAACACCCCA
GATAGTCGTCCAGCTGGTCTAGAGGAAGTTGATCAACAGTCATTACCTGGAGAACAAGGAATCA
ATTTGGACAACACAGGCCCTAAACTGCCAGACTTTTCAAACCGGCCACCAGGTTATCCTACACA
ACCAGTTGAACAGAGGCCACTGCAGCAGATGCCTCCTCAACTCATGCAGCATGTGGCACCCCCA
CCACAGCCACCACAGCAGCAGCCACAACCACAACTGCCTCAACAGCAGCCACAGCCGCAGCCAC
CACCACCTAGTCAGCCACAGTCGCAGCAGCAGCAGCAGCAGATGATGATGATGCTCATGATGCA
GCAAGATCCCAAATCCATTAGGCTTCCGGTCTCCCAAAATGTCCATCCTCCACGGGGTCCTCTG
AACCCAGACTCCCAAAGAGTGCCCATGCAACAGAGTGGCAATGTGCCTGTCATGGTTAGTTTGC
AAGGACCTGCCTCTGTGCCACCGTCACCTGATAAACAAAGGATGCCAATGCCTGTGAATACTCC
GCTGGGAAGTAATTCAAGAAAGATGGTATACCAGGAGAGCCCACAGAATTCCAGCTCACCACTA
GGAGAGATGCCCTCACTTCCTGAAGCTGGTGGCAGTGAAGTACCATCTGTTTCAGGAGGCCCAA
GTAACATGCCCTCGCATTTAGTAGTTTCTCAGAATCAATTAATGATGACAGGACCCAAACCTGG
ACCATCTCCCCTTTCAGCAACTCAAGGTGCAACTCCCCAGCAGCCTCCTGTAAACTCCTTGCCT
AGTTCCCATGGCCACCACTTTCCAAATGTGGCTGCACCAACCCAAACATCTAGGCCTAAAACAC
CAAACAGAGCCAGCCCCAGACCCTATTATCCTCAGACGCCCAACAACCGCCCTCCTAGCACAGA
ACCTTCAGAAATCAGTCTCTCTCCAGAAAGACTCAATGCTTCCATAGCAGGACTCTTCCCTCCA
CAGATTAATATTCCTTTACCTCCCAGGCCAAACTTAAATAGGGGCTTTGATCAACAGGGCTTAA
ATCCAACAACTCTGAAGGCCATTGGGCAAGCACCTTCAAATCTCACTGTAAGTAATCCTCCTAA
CTTTGCTGCCCCACAAGCTCATAAATTAGATTCTGTGGTGGTGAGTTCTGGAAAACAGTCTAAT
CCTGGAACAACAAAACGGGCAAGTCCAAGCAACAGTCGCAGGTCTAGTCCGGGGTCCAGTAGAA
AGACTACCCCAAGTCCTGGAAGGCAAAATTCAAAAGCCCCTAAACTTACTCTGGCTTCTCAAAC
AAGCACAACCCTGTTGCAGAACATGGAGCTGCCTAGAAATGTGTTGGTTGGTCCCACTCCACTT
GCCAATCCCCCTTTATCTGGAAGCTTTCCTAACAATAATGGGCTTAATTCCCAGAATCCCACCG
TGCCTGCGCCTGCAGTGGGGACTGTTGTTGAGGATAACAAAGAGAGCTTGAATGTTCCTCAGGA
CAGTGATTGCCAGAATTCCCAGGGGAGGAAGGAACAGGTAAACACTGAGCTGAAAGCAGTCCCT
ATCCAAGAAGCTAAAATGGTTGTCCCCGAAGATCAGTCCAAAAAGGATGGGCAACCTTTGGATC
CTAACAAACTCCCCAGTGTAGAAGAGAACAAAACTTTGATGTCTCCTGCCATGAGAGAAGCACC
AACATCACTAAGCCAACTTCTCGACAACTCTGGAGCTCCTAATGTGACCATTAAACCCCCTGGG
CTTACAGATCTGGAAGTAACACCTCCAGCAGTTTCAGGAGAGGACCTCAAAAAAGCATCTGTCA
TTCCCACACTGCAGGATCCGTCTTCTAAAGAACCCTCTAATTCTTTAAACTTACCTCACAGTAA
CGAGCCGTGTTCAACCCTTGCGCATCCAGAATTGAGTGAGGTCAGCTCAAACATTGCACCAAGC
ATCCCTCCAGTAATGTCAAGACCTGTCAGCTCTTCCTCCATTTCTACTCCCTTACCCCCAAACC
AAATAACTGTATTTGTTACTTCCAACCCCATAACCACTTCATCTAACACATCAGCAGCCCTGCC
AACTCACTTGCAGTCTGCATTGATGTCGACAGTCGTCACGATGCCCAACGTGGGTAACAAAGTT
ATGGTTTCTGAGGGACAGTCAGCTGCTCAATCTAATGCCCGGCCTCAGTTCATTACACCTGTCT
TTATCAATTCATCTTCAATAATTCAGGTTATGAAAGGATCACAGCCAAGCACAATCCCTGCAAC
CCCATTGACAACCAACAGTGGCCTGATGCCTCCCTCTGTCGCAGTTGTTGGACCTTTACACATA
CCTCAGAACATAAAATTTTCTTCAGCTCCTGTAACACCTAATGTCCCCTCCAGTAGTCCTGCTC
CAAATATACAGACAGGTCGGCCATTGGTCCTTAGCTCACGAGCCACTCCTGTTCCGCTGCCTTC
CCCTCCTTGTACATCCTCTCCAGTCGTCGCTCCTAATCCTTCTGTCCAGCAAGTAAAAGAATTA
AATCCAGATGAGGCTAGTCCTCAGACGAACACCTCAGCAGACCAGAGCACTCTGCCTTCTTCAC
AACCAACCACAGTAGTTTCTCCCCTTTTGGCCAATAGTCCAGGCTCCTCTGCCAATCGGCGAAG
CCCAGTCTCATCCAGTAAGGGCAAAGGAAAAGTGGACAAAATTGGCCAGATTTTGCTGACCAAA
GCTTGTAAGAAAGTTACAGGCTCTCTGGAGAAAGGGGAAGAACAGTATGGTGCAGATGGAGAAA
CTGAAGGCCCAGGGCTAGAGACCACAACTCCTGGGCTAATGGGAACAGAGCAGTGCTCCACAGA
GCTGGACAGTAAAACCCCAACACCCTCAGCACCCACTCTCCTAAAAATGACCTCTAGCCCCATG
GGCCCAAGCTCCACCTCAACAGGACCCATCTTACCTGGCGGTGCTCTTCCCACCAGTGTACGCT
CTGTAGTAACCACATTGGTACCCTCTGAGCTCATCTCCACAGCGCCAACCACAAAAGGCAATCA
TGGTGGGATAACATCTGAGCCACTTGCAGGTGGCCTAGTGGAGGAGAAGGTGGGATCCCATCCA
GAGCTTCTACCCAGCATAGCCCCTTCACAGACTTTAGTCCCAAAGGAATCTCCAGCCACAGCAC
TGCAGGGCTCTGTTGGCAGACCAGAACTTGAGGCAAATGCTGCCATAGCCTCTGGACAAAGCAG
TGAGCCAAAAGAGACAGTTGAGAAGTCCAAAACCCCCAGCCGAAGAAACTCTCGAACTGAGGAG
CCAACTATGGCTTCTGAGAATGTGGAAAATGGACATCGAAAAAGATCTTCTCGACCTGCTTCAG
CCTCCAGCTCTACTAAAGATATAACTGGTGCAGTGCAATCTAAGCGAAGAAAATCCAAGTAAGC
AAGCAGGAAGATGACTTGATACTTGTAAATGTTTGTGAATTTTACAAAGAGCAATTTTCAGCTG
TGACTTTTTAAATCTATTTCTGTACAGTCAGTCATTTTAATAACGTAATGACGCGGTCCTTTTC
CTAATCCCTAAAACCTGTCTCATAAAGTGTAATGGGGAGCAGCCCTTTTGGTGTTGCAAAATGA
AGTTCAAGGCTTCTAAAATGTTGCCATGTATTGAAAGGAGCTAATGCCATTGTAAATGTTATTA
GTTTCACATTTCTTGAGCAGCCTAGAGTACAGGGTGAACATTTGTAGATCTTGTAATGATGTAT
TGTGCTGTGGAAGTACTGTGTGTGAATAGCAGTAGTGGGGCAAAAAGCAATCTTGTCATTTGGA
AATGTAAATAATTTTATTATATAGTGTTTTGGATGTATTTGTTGTAGAAATGGACCAGTGAATA
AAGAGAATCTAAGGGTTTGTACAATGTGAAATACTGAACGTGTTAAATAAATGTCTTTGTCATA
GAA

hide sequence

RefSeq Acc Id:

XM_039104103 ⟹ XP_038960031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI
mRatBN7.2	3	143,890,896 - 143,961,914 (-)	NCBI

RefSeq Acc Id:

XM_039104104 ⟹ XP_038960032

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI
mRatBN7.2	3	143,890,896 - 143,961,914 (-)	NCBI

RefSeq Acc Id:

XM_039104105 ⟹ XP_038960033

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI
mRatBN7.2	3	143,890,896 - 143,961,914 (-)	NCBI

RefSeq Acc Id:

XM_039104106 ⟹ XP_038960034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI
mRatBN7.2	3	143,890,896 - 143,961,914 (-)	NCBI

RefSeq Acc Id:

XM_039104107 ⟹ XP_038960035

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI
mRatBN7.2	3	143,890,896 - 143,961,914 (-)	NCBI

RefSeq Acc Id:

XM_063282996 ⟹ XP_063139066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI

RefSeq Acc Id:

XM_063282997 ⟹ XP_063139067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,351,062 - 164,422,079 (-)	NCBI

RefSeq Acc Id:

XR_005501749

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	164,359,011 - 164,422,079 (-)	NCBI
mRatBN7.2	3	143,898,839 - 143,961,914 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001263643	(Get FASTA)	NCBI Sequence Viewer
	NP_001416588	(Get FASTA)	NCBI Sequence Viewer
	XP_006235358	(Get FASTA)	NCBI Sequence Viewer
	XP_008760517	(Get FASTA)	NCBI Sequence Viewer
	XP_038960031	(Get FASTA)	NCBI Sequence Viewer
	XP_038960032	(Get FASTA)	NCBI Sequence Viewer
	XP_038960033	(Get FASTA)	NCBI Sequence Viewer
	XP_038960034	(Get FASTA)	NCBI Sequence Viewer
	XP_038960035	(Get FASTA)	NCBI Sequence Viewer
	XP_063139066	(Get FASTA)	NCBI Sequence Viewer
	XP_063139067	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF71830	(Get FASTA)	NCBI Sequence Viewer
	AAF76422	(Get FASTA)	NCBI Sequence Viewer
	EDL85918	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024714
	ENSRNOP00000093567
	ENSRNOP00000097352
GenBank Protein	Q9JLI4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001263643 ⟸ NM_001276714

- UniProtKB:

G3V8C9 (UniProtKB/TrEMBL), A6KI36 (UniProtKB/TrEMBL), A0A8I6AHU2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVLDDLPNFEDIYTSLCSSTMGDSEVEFDSGLEDDDTKSDSILEDSTIFVAFKGNIDDKDFKWK
LDTILQSVPGLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQ
IEGEGAINLALGQNRSQDVRMNGPVVSGNSVRMEAGFPMASGPGLIRMTSPATVMMPQGGNASS
SMMAPGPNPELQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLPPAHHPMQPVPVNRQMNPAN
FPQLQQQQQQQQQQQQQQQQQQQQQLQTRPLQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSG
ALQPPPAQGSLGPMTTNQGWKKAPLPSPMQAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHT
NFPQMSNPGQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQ
MGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPSQGPPSLHPGLGGMPKRLP
PGFSAGQANPNFMQGQVPSTTAATPGNSGALQLQANQSVQHAGGQGAGPPQNQMQVSHGPPNMM
QPSLMGIHGNINNQQAGSSGVPQVTLGSMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNP
QNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQ
QNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGP
VSNSPSQVMGIQGQVLRPPGPSPHMAQQHTDPATTANNDVNLSQMMPDVSMQQTSMVPPHVQSM
QGNSASGSHFSGHGVSFNAPFGGAPNGTQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHF
GVNNKQNNTNANKQKKKKPPRKKKNCHQDLNTPDSRPAGLEEVDQQSLPGEQGINLDNTGPKLP
DFSNRPPGYPTQPVEQRPLQQMPPQLMQHVAPPPQPPQQQPQPQLPQQQPQPQPPPPSQPQSQQ
QQQQMMMMLMMQQDPKSIRLPVSQNVHPPRGPLNPDSQRVPMQQSGNVPVMVSLQGPASVPPSP
DKQRMPMPVNTPLGSNSRKMVYQESPQNSSSPLGEMPSLPEAGGSEVPSVSGGPSNMPSHLVVS
QNQLMMTGPKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYY
PQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQINIPLPPRPNLNRGFDQQGLNPTTLKAIGQ
APSNLTVSNPPNFAAPQAHKLDSVVVSSGKQSNPGTTKRASPSNSRRSSPGSSRKTTPSPGRQN
SKAPKLTLASQTSTTLLQNMELPRNVLVGPTPLANPPLSGSFPNNNGLNSQNPTVPAPAVGTVV
EDNKESLNVPQDSDCQNSQGRKEQVNTELKAVPIQEAKMVVPEDQSKKDGQPLDPNKLPSVEEN
KTLMSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPAVSGEDLKKASVIPTLQDPSSK
EPSNSLNLPHSNEPCSTLAHPELSEVSSNIAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNP
ITTSSNTSAALPTHLQSALMSTVVTMPNVGNKVMVSEGQSAAQSNARPQFITPVFINSSSIIQV
MKGSQPSTIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVTPNVPSSSPAPNIQTGRPLV
LSSRATPVPLPSPPCTSSPVVAPNPSVQQVKELNPDEASPQTNTSADQSTLPSSQPTTVVSPLL
ANSPGSSANRRSPVSSSKGKGKVDKIGQILLTKACKKVTGSLEKGEEQYGADGETEGPGLETTT
PGLMGTEQCSTELDSKTPTPSAPTLLKMTSSPMGPSSTSTGPILPGGALPTSVRSVVTTLVPSE
LISTAPTTKGNHGGITSEPLAGGLVEEKVGSHPELLPSIAPSQTLVPKESPATALQGSVGRPEL
EANAAIASGQSSEPKETVEKSKTPSRRNSRTEEPTMASENVENGHRKRSSRPASASSSTKDITG
AVQSKRRKSK

hide sequence

RefSeq Acc Id:

XP_006235358 ⟸ XM_006235296

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVLDDLPNFEDIYTSLCSSTMGDSEVEFDSGLEDDDTKSDSILEDSTIFVAFKGNIDDKDFKWK
LDTILQSVPGLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQ
IEGEGAINLALGQNRSQDVRMNGPVVSGNSVRMEAGFPMASGPGLIRMTSPATVMMPQGGNASS
SMMAPGPNPELQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLPPAHHPMQPVPVNRQMNPAN
FPQLQQQQQQQQQQQQQQQQQQQQQLQTRPLQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSG
ALQPPPAQGSLGPMTTNQGWKKAPLPSPMQAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHT
NFPQMSNPGQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQ
MGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPSQGPPSLHPGLGGMPKRLP
PGFSAGQANPNFMQGQVPSTTAATPGNSGALQLQANQSVQHAGGQGAGPPQNQMQVSHGPPNMM
QPSLMGIHGNINNQQAGSSGVPQVTLGSMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNP
QNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQ
QNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGP
VSNSPSQVMGIQGQVLRPPGPSPHMAQQHTDPATTANNDVNLSQMMPDVSMQQTSMVPPHVQSM
QGNSASGSHFSGHGVSFNAPFGGAPNGTQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHF
GVNNKQNNTNANKQKKKKPPRKKKNCHQDLNTPDSRPAGLEEVDQQSLPGEQGINLDNTGPKLP
DFSNRPPGYPTQPVEQRPLQQMPPQLMQHVAPPPQPPQQQPQPQLPQQQPQPQPPPPSQPQSQQ
QQQQMMMMLMMQQDPKSIRLPVSQNVHPPRGPLNPDSQRVPMQQSGNVPVMVSLQGPASVPPSP
DKQRMPMPVNTPLGSNSRKMVYQESPQNSSSPLGEMPSLPEAGGSEVPSVSGGPSNMPSHLVVS
QNQLMMTGPKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYY
PQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQINIPLPPRPNLNRGFDQQGLNPTTLKAIGQ
APSNLTVSNPPNFAAPQAHKLDSVVVSSGKQSNPGTTKRASPSNSRRSSPGSSRKTTPSPGRQN
SKAPKLTLASQTSTTLLQNMELPRNVLVGPTPLANPPLSGSFPNNNGLNSQNPTVPAPAVGTVV
EDNKESLNVPQDSDCQNSQGRKEQVNTELKAVPIQEAKMVVPEDQSKKDGQPLDPNKLPSVEEN
KTLMSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPAVSGEDLKKASVIPTLQDPSSK
EPSNSLNLPHSNEPCSTLAHPELSEVSSNIAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNP
ITTSSNTSAALPTHLQSALMSTVVTMPNVGNKVMVSEGQSAAQSNARPQFITPVFINSSSIIQV
MKGSQPSTIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVTPNVPSSSPAPNIQTGRPLV
LSSRATPVPLPSPPCTSSPVVAPNPSVQQVKELNPDEASPQTNTSADQSTLPSSQPTTVVSPLL
ANSPGSSANRRSPVSSSKGKGKVDKIGQILLTKACKKVTGSLEKGEEQYGADGETEGPGLETTT
PGLMGTEQCSTELDSKTPTPSAPTLLKMTSSPMGPSSTSTGPILPGGALPTSVRSVVTTLVPSE
LISTAPTTKGNHGGITSEPLAGGLVEEKVGSHPELLPSIAPSQTLVPKESPATALQGSVGRPEL
EANAAIASGQSSEPKETVEKSKTPSRRNSRTEEPTMASENVENGHRKRSSRPASASSSTKDITG
AVQSKRRKSK

hide sequence

RefSeq Acc Id:	XP_008760517 ⟸ XM_008762295
- Peptide Label:	isoform X1
- UniProtKB:	G3V8C9 (UniProtKB/TrEMBL), A6KI36 (UniProtKB/TrEMBL), A0A8I6AHU2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVLDDLPNFEDIYTSLCSSTMGDSEVEFDSGLEDDDTKSDSILEDSTIFVAFKGNIDDKDFKWK LDTILQSVPGLLHMESSKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQLRDLGILSVQ IEGEGAINLALGQNRSQDVRMNGPVVSGNSVRMEAGFPMASGPGLIRMTSPATVMMPQGGNASS SMMAPGPNPELQPRTPRPASQSDAMDPLLSGLHIQQQSHPSGSLPPAHHPMQPVPVNRQMNPAN FPQLQQQQQQQQQQQQQQQQQQQQQLQTRPLQQHQQQQPQGIRPQFTAPTQVPVPPGWNQLPSG ALQPPPAQGSLGPMTTNQGWKKAPLPSPMQAQLQARPSLATVQTPSHPPPPYPFGSQQASQAHT NFPQMSNPGQFTAPQMKSLQGGPSRVPTPLQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQ MGPRPPQNNPLSQGFQQPVSSPGRNPMVQQGNVPPNFMVMQQQPPSQGPPSLHPGLGGMPKRLP PGFSAGQANPNFMQGQVPSTTAATPGNSGALQLQANQSVQHAGGQGAGPPQNQMQVSHGPPNMM QPSLMGIHGNINNQQAGSSGVPQVTLGSMQGQPQQGPPSQLMGMHQQIVPSQGQMAQQQGTLNP QNPMILSRAQLMPQGQMMVNAQNQNLGPSPQRMTPPKQMLPQQGPQMMAPHNQMMGPQGQVLLQ QNPMIEQIMTNQMQGNKAQFNSQNQSNVMPGPAQIMRGPTPNMQGNMVQFTGQMSGQMLPQQGP VSNSPSQVMGIQGQVLRPPGPSPHMAQQHTDPATTANNDVNLSQMMPDVSMQQTSMVPPHVQSM QGNSASGSHFSGHGVSFNAPFGGAPNGTQMSCGQNPGFPVNKDVTLTSPLLVNLLQSDISAGHF GVNNKQNNTNANKQKKKKPPRKKKNCHQDLNTPDSRPAGLEEVDQQSLPGEQGINLDNTGPKLP DFSNRPPGYPTQPVEQRPLQQMPPQLMQHVAPPPQPPQQQPQPQLPQQQPQPQPPPPSQPQSQQ QQQQMMMMLMMQQDPKSIRLPVSQNVHPPRGPLNPDSQRVPMQQSGNVPVMVSLQGPASVPPSP DKQRMPMPVNTPLGSNSRKMVYQESPQNSSSPLGEMPSLPEAGGSEVPSVSGGPSNMPSHLVVS QNQLMMTGPKPGPSPLSATQGATPQQPPVNSLPSSHGHHFPNVAAPTQTSRPKTPNRASPRPYY PQTPNNRPPSTEPSEISLSPERLNASIAGLFPPQINIPLPPRPNLNRGFDQQGLNPTTLKAIGQ APSNLTVSNPPNFAAPQAHKLDSVVVSSGKQSNPGTTKRASPSNSRRSSPGSSRKTTPSPGRQN SKAPKLTLASQTSTTLLQNMELPRNVLVGPTPLANPPLSGSFPNNNGLNSQNPTVPAPAVGTVV EDNKESLNVPQDSDCQNSQGRKEQVNTELKAVPIQEAKMVVPEDQSKKDGQPLDPNKLPSVEEN KTLMSPAMREAPTSLSQLLDNSGAPNVTIKPPGLTDLEVTPPAVSGEDLKKASVIPTLQDPSSK EPSNSLNLPHSNEPCSTLAHPELSEVSSNIAPSIPPVMSRPVSSSSISTPLPPNQITVFVTSNP ITTSSNTSAALPTHLQSALMSTVVTMPNVGNKVMVSEGQSAAQSNARPQFITPVFINSSSIIQV MKGSQPSTIPATPLTTNSGLMPPSVAVVGPLHIPQNIKFSSAPVTPNVPSSSPAPNIQTGRPLV LSSRATPVPLPSPPCTSSPVVAPNPSVQQVKELNPDEASPQTNTSADQSTLPSSQPTTVVSPLL ANSPGSSANRRSPVSSSKGKGKVDKIGQILLTKACKKVTGSLEKGEEQYGADGETEGPGLETTT PGLMGTEQCSTELDSKTPTPSAPTLLKMTSSPMGPSSTSTGPILPGGALPTSVRSVVTTLVPSE LISTAPTTKGNHGGITSEPLAGGLVEEKVGSHPELLPSIAPSQTLVPKESPATALQGSVGRPEL EANAAIASGQSSEPKETVEKSKTPSRRNSRTEEPTMASENVENGHRKRSSRPASASSSTKDITG AVQSKRRKSK hide sequence

Ensembl Acc Id:

ENSRNOP00000024714 ⟸ ENSRNOT00000024714

RefSeq Acc Id:	XP_038960033 ⟸ XM_039104105
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AHU2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960032 ⟸ XM_039104104
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AHU2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960035 ⟸ XM_039104107
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038960034 ⟸ XM_039104106
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038960031 ⟸ XM_039104103
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AHU2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000093567 ⟸ ENSRNOT00000114206

Ensembl Acc Id:

ENSRNOP00000097352 ⟸ ENSRNOT00000118396

RefSeq Acc Id:	XP_063139067 ⟸ XM_063282997
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063139066 ⟸ XM_063282996
- Peptide Label:	isoform X7

Protein Domains

Nuclear receptor coactivator 6 TRADD-N

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JLI4-F1-model_v2	AlphaFold	Q9JLI4	1-418	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620111	AgrOrtholog
BioCyc Gene	G2FUF-47137	BioCyc
Ensembl Genes	ENSRNOG00000018288	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000024714	ENTREZGENE
	ENSRNOT00000114206	ENTREZGENE
	ENSRNOT00000118396	ENTREZGENE
InterPro	NCOA6	UniProtKB/Swiss-Prot
NCBI Gene	116464	ENTREZGENE
PANTHER	NUCLEAR RECEPTOR COACTIVATOR 6	UniProtKB/Swiss-Prot
	PTHR15690	UniProtKB/Swiss-Prot
PhenoGen	Ncoa6	PhenoGen
RatGTEx	ENSRNOG00000018288	RatGTEx
UniProt	A0A8I6AHU2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ARE2	ENTREZGENE, UniProtKB/TrEMBL
	A6KI36	ENTREZGENE, UniProtKB/TrEMBL
	G3V8C9	ENTREZGENE, UniProtKB/TrEMBL
	NCOA6_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q9JIH6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-26	Ncoa6	nuclear receptor coactivator 6			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Ncoa6	nuclear receptor coactivator 6			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains a LXXLL motif	633379
gene_protein	2063 amino acid residues	633379

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

RGD Manual Annotations