Pomt1 (protein-O-mannosyltransferase 1) - Rat Genome Database

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Gene: Pomt1 (protein-O-mannosyltransferase 1) Rattus norvegicus
Analyze
Symbol: Pomt1
Name: protein-O-mannosyltransferase 1
RGD ID: 620078
Description: Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be involved in protein O-linked glycosylation via mannose. Predicted to act upstream of or within extracellular matrix organization. Predicted to be located in acrosomal vesicle; endoplasmic reticulum membrane; and sarcoplasmic reticulum. Predicted to be part of dolichyl-phosphate-mannose-protein mannosyltransferase complex. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in cardiomyopathy; cleft lip; lissencephaly; and muscular dystrophy (multiple). Orthologous to human POMT1 (protein O-mannosyltransferase 1); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5-triiodo-L-thyronine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: dolichyl-phosphate-mannose--protein mannosyltransferase 1; protein O-mannosyl-transferase 1; protein O-mannosyltransferase 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,918,370 - 35,936,330 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl335,918,188 - 35,936,364 (+)EnsemblGRCr8
mRatBN7.2315,520,717 - 15,538,579 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,520,481 - 15,538,581 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx318,590,099 - 18,607,991 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,175,092 - 27,192,984 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,425,586 - 25,443,460 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,253,424 - 11,271,873 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,254,026 - 11,271,872 (+)Ensemblrn6Rnor6.0
Rnor_5.0316,602,808 - 16,620,746 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4311,348,786 - 11,366,633 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera310,265,600 - 10,283,445 (+)NCBICelera
RGSC_v3.1311,245,184 - 11,263,006 (+)NCBI
Cytogenetic Map3p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cardiomyopathy in patients with POMT1-related congenital and limb-girdle muscular dystrophy. Bello L, etal., Eur J Hum Genet. 2012 Dec;20(12):1234-9. doi: 10.1038/ejhg.2012.71. Epub 2012 May 2.
2. Mutations in the O-mannosyltransferase gene POMT1 give rise to the severe neuronal migration disorder Walker-Warburg syndrome. Beltran-Valero de Bernabe D, etal., Am J Hum Genet 2002 Nov;71(5):1033-43.
3. Molecular heterogeneity in fetal forms of type II lissencephaly. Bouchet C, etal., Hum Mutat. 2007 Oct;28(10):1020-7.
4. Mutations in POMT1 are found in a minority of patients with Walker-Warburg syndrome. Currier SC, etal., Am J Med Genet A. 2005 Feb 15;133A(1):53-7.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Identification of a human homolog of the Drosophila rotated abdomen gene (POMT1) encoding a putative protein O-mannosyl-transferase, and assignment to human chromosome 9q34.1. Jurado LA, etal., Genomics 1999 Jun 1;58(2):171-80.
8. Molecular cloning and characterization of rat Pomt1 and Pomt2. Manya H, etal., Glycobiology. 2006 Sep;16(9):863-73. Epub 2006 May 16.
9. Demonstration of mammalian protein O-mannosyltransferase activity: coexpression of POMT1 and POMT2 required for enzymatic activity. Manya H, etal., Proc Natl Acad Sci U S A 2004 Jan 13;101(2):500-5. Epub 2003 Dec 29.
10. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
11. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
12. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
13. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
14. GOA pipeline RGD automated data pipeline
15. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Comprehensive gene review and curation RGD comprehensive gene curation
18. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
19. Walker-Warburg Syndrome with POMT1 mutations can be associated with cleft lip and cleft palate. Vajsar J, etal., Neuromuscul Disord. 2008 Aug;18(8):675-7. doi: 10.1016/j.nmd.2008.05.014. Epub 2008 Jul 18.
20. The expanding phenotype of POMT1 mutations: from Walker-Warburg syndrome to congenital muscular dystrophy, microcephaly, and mental retardation. van Reeuwijk J, etal., Hum Mutat. 2006 May;27(5):453-9.
Additional References at PubMed
PMID:15383666   PMID:15489334   PMID:17456771   PMID:28512129  


Genomics

Comparative Map Data
Pomt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,918,370 - 35,936,330 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl335,918,188 - 35,936,364 (+)EnsemblGRCr8
mRatBN7.2315,520,717 - 15,538,579 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,520,481 - 15,538,581 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx318,590,099 - 18,607,991 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,175,092 - 27,192,984 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,425,586 - 25,443,460 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,253,424 - 11,271,873 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,254,026 - 11,271,872 (+)Ensemblrn6Rnor6.0
Rnor_5.0316,602,808 - 16,620,746 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4311,348,786 - 11,366,633 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera310,265,600 - 10,283,445 (+)NCBICelera
RGSC_v3.1311,245,184 - 11,263,006 (+)NCBI
Cytogenetic Map3p12NCBI
POMT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389131,502,918 - 131,523,799 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9131,502,789 - 131,523,806 (+)Ensemblhg38GRCh38
GRCh379134,378,305 - 134,399,186 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369133,368,110 - 133,389,014 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349131,407,865 - 131,428,746NCBI
Celera9104,918,461 - 104,939,373 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9103,872,837 - 103,893,810 (+)NCBIHuRef
CHM1_19134,527,759 - 134,548,591 (+)NCBICHM1_1
T2T-CHM13v2.09143,715,812 - 143,736,761 (+)NCBIT2T-CHM13v2.0
Pomt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,126,321 - 32,145,017 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,126,602 - 32,145,017 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38232,236,590 - 32,255,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,236,590 - 32,255,005 (+)Ensemblmm10GRCm38
MGSCv37232,092,203 - 32,110,525 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36232,058,692 - 32,077,014 (+)NCBIMGSCv36mm8
Celera231,941,009 - 31,959,335 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Pomt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555131,189,169 - 1,203,933 (+)Ensembl
ChiLan1.0NW_0049555131,189,169 - 1,203,933 (+)NCBIChiLan1.0ChiLan1.0
POMT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2117,830,942 - 7,854,814 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan197,833,278 - 7,857,624 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,625,290 - 102,646,066 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19131,265,750 - 131,285,881 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9131,265,750 - 131,285,881 (+)EnsemblpanPan2panpan1.1
POMT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,615,349 - 52,631,538 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,615,655 - 52,630,836 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha951,882,359 - 51,899,815 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0953,517,596 - 53,535,056 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,519,165 - 53,535,048 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,297,027 - 52,312,897 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,614,407 - 52,631,871 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0952,708,808 - 52,726,275 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pomt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,481,216 - 198,499,348 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648718,249,472 - 18,267,256 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648718,249,472 - 18,267,875 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,432,210 - 271,452,461 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11271,432,196 - 271,448,584 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,440,591 - 305,456,740 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POMT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,620,179 - 6,639,051 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl126,618,312 - 6,639,024 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660798,918,116 - 8,938,223 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pomt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,495,254 - 4,508,616 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247604,494,701 - 4,508,735 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Pomt1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v153,382,991 - 3,401,965 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pomt1
67 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:67
Interacting mature miRNAs:83
Transcripts:ENSRNOT00000015214
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH130122  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,538,647 - 15,538,834 (+)MAPPERmRatBN7.2
Rnor_6.0311,271,942 - 11,272,128NCBIRnor6.0
Rnor_5.0316,620,812 - 16,620,998UniSTSRnor5.0
RGSC_v3.4311,366,702 - 11,366,888UniSTSRGSC3.4
Celera310,283,514 - 10,283,700UniSTS
RH 3.4 Map365.7UniSTS
Cytogenetic Map3p11UniSTS
RH131674  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2315,538,229 - 15,538,438 (+)MAPPERmRatBN7.2
Rnor_6.0311,271,524 - 11,271,732NCBIRnor6.0
Rnor_5.0316,620,394 - 16,620,602UniSTSRnor5.0
RGSC_v3.4311,366,284 - 11,366,492UniSTSRGSC3.4
Celera310,283,096 - 10,283,304UniSTS
RH 3.4 Map365.8UniSTS
Cytogenetic Map3p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000015214   ⟹   ENSRNOP00000015214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,918,188 - 35,936,364 (+)Ensembl
mRatBN7.2 Ensembl315,520,481 - 15,538,581 (+)Ensembl
Rnor_6.0 Ensembl311,254,026 - 11,271,872 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082794   ⟹   ENSRNOP00000073262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,918,510 - 35,936,326 (+)Ensembl
mRatBN7.2 Ensembl315,520,762 - 15,538,578 (+)Ensembl
Rnor_6.0 Ensembl311,254,056 - 11,271,872 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119777   ⟹   ENSRNOP00000079634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,918,510 - 35,936,326 (+)Ensembl
mRatBN7.2 Ensembl315,520,762 - 15,538,578 (+)Ensembl
RefSeq Acc Id: NM_053406   ⟹   NP_445858
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,918,480 - 35,936,327 (+)NCBI
mRatBN7.2315,520,732 - 15,538,579 (+)NCBI
Rnor_6.0311,254,026 - 11,271,873 (+)NCBI
Rnor_5.0316,602,808 - 16,620,746 (+)NCBI
RGSC_v3.4311,348,786 - 11,366,633 (+)RGD
Celera310,265,600 - 10,283,445 (+)RGD
Sequence:
RefSeq Acc Id: XM_039105979   ⟹   XP_038961907
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,918,380 - 35,936,330 (+)NCBI
mRatBN7.2315,520,820 - 15,538,579 (+)NCBI
RefSeq Acc Id: XM_063284710   ⟹   XP_063140780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,918,370 - 35,934,169 (+)NCBI
RefSeq Acc Id: XR_005501994
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,918,373 - 35,935,164 (+)NCBI
mRatBN7.2315,520,717 - 15,537,416 (+)NCBI
RefSeq Acc Id: NP_445858   ⟸   NM_053406
- UniProtKB: Q6IRI2 (UniProtKB/Swiss-Prot),   Q99PR0 (UniProtKB/Swiss-Prot),   A6JU44 (UniProtKB/TrEMBL),   A0A0G2K523 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073262   ⟸   ENSRNOT00000082794
Ensembl Acc Id: ENSRNOP00000015214   ⟸   ENSRNOT00000015214
RefSeq Acc Id: XP_038961907   ⟸   XM_039105979
- Peptide Label: isoform X1
- UniProtKB: Q99PR0 (UniProtKB/Swiss-Prot),   Q6IRI2 (UniProtKB/Swiss-Prot),   A6JU44 (UniProtKB/TrEMBL),   A0A0G2K523 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079634   ⟸   ENSRNOT00000119777
RefSeq Acc Id: XP_063140780   ⟸   XM_063284710
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K523 (UniProtKB/TrEMBL)
Protein Domains
MIR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99PR0-F1-model_v2 AlphaFold Q99PR0 1-747 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691988
Promoter ID:EPDNEW_R2503
Type:initiation region
Name:Pomt1_1
Description:protein-O-mannosyltransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0311,254,061 - 11,254,121EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620078 AgrOrtholog
BioCyc Gene G2FUF-50151 BioCyc
BioCyc Pathway PWY-7922 [protein O-mannosylation II (mammals, core M1 and core M2)] BioCyc
  PWY-7979 [protein O-mannosylation III (mammals, core M3)] BioCyc
BioCyc Pathway Image PWY-7922 BioCyc
  PWY-7979 BioCyc
Ensembl Genes ENSRNOG00000010477 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015214 ENTREZGENE
  ENSRNOT00000015214.5 UniProtKB/Swiss-Prot
  ENSRNOT00000082794 ENTREZGENE
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7104668 IMAGE-MGC_LOAD
InterPro GlyclTrfase_39-like UniProtKB/Swiss-Prot
  Glyco_trans_39/83 UniProtKB/Swiss-Prot
  MIR_dom_sf UniProtKB/Swiss-Prot
  MIR_motif UniProtKB/Swiss-Prot
  PMT_4TMC UniProtKB/Swiss-Prot
KEGG Report rno:84430 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91582 IMAGE-MGC_LOAD
NCBI Gene 84430 ENTREZGENE
PANTHER PROTEIN O-MANNOSYL-TRANSFERASE 1 UniProtKB/Swiss-Prot
  PTHR10050 UniProtKB/Swiss-Prot
Pfam MIR UniProtKB/Swiss-Prot
  PMT UniProtKB/Swiss-Prot
  PMT_4TMC UniProtKB/Swiss-Prot
PhenoGen Pomt1 PhenoGen
PROSITE MIR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000010477 RatGTEx
SMART MIR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF82109 UniProtKB/Swiss-Prot
UniProt A0A0G2K523 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZN20_RAT UniProtKB/TrEMBL
  A6JU44 ENTREZGENE, UniProtKB/TrEMBL
  A6JU45_RAT UniProtKB/TrEMBL
  POMT1_RAT UniProtKB/Swiss-Prot
  Q6IRI2 ENTREZGENE
  Q99PR0 ENTREZGENE
UniProt Secondary Q6IRI2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Pomt1  protein-O-mannosyltransferase 1    protein O-mannosyltransferase 1  Name updated 1299863 APPROVED
2002-08-07 Pomt1  protein O-mannosyltransferase 1      Symbol and Name status set to provisional 70820 PROVISIONAL