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Gene: Sorbs2 (sorbin and SH3 domain containing 2) Rattus norvegicus

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Symbol:

Sorbs2

Name:

sorbin and SH3 domain containing 2

RGD ID:

620061

Description:

Predicted to enable identical protein binding activity and protein domain specific binding activity. Involved in cell growth involved in cardiac muscle cell development. Located in dendrite and neuronal cell body. Orthologous to human SORBS2 (sorbin and SH3 domain containing 2); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

arg-binding protein 2; arg/Abl-interacting protein 2; Arg/Abl-interacting protein ArgBP2; Argbp2; nArgBP2; neural ArgBP2; sorbin and SH3 domain-containing protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SORBS2 (sorbin and SH3 domain containing 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Sorbs2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sorbs2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SORBS2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SORBS2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sorbs2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SORBS2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SORBS2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sorbs2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sorbs2 (sorbin and SH3 domain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SH3BP2 (SH3 domain binding protein 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SORBS2 (sorbin and SH3 domain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sorbs2 (sorbin and SH3 domain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sorbs2a (sorbin and SH3 domain containing 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	sorbs2a (sorbin and SH3 domain containing 2a)	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Danio rerio (zebrafish):	sorbs2b (sorbin and SH3 domain containing 2b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sorb-1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BEM1	Alliance	DIOPT (Ensembl Compara\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sorbs2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sorbs2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CAP	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	53,167,795 - 53,481,300 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	53,167,827 - 53,358,986 (-)	Ensembl				GRCr8
mRatBN7.2	16	46,435,220 - 46,748,743 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	46,435,237 - 46,626,514 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	51,837,443 - 52,028,439 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	55,206,227 - 55,397,004 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	50,476,834 - 50,667,832 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	49,626,205 - 49,820,223 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	49,626,205 - 49,820,235 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	49,355,585 - 49,545,430 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	49,722,539 - 49,917,550 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	44,432,235 - 44,623,524 (-)	NCBI		Celera
RGSC_v3.1	16	49,722,613 - 49,917,626 (-)	NCBI
Cytogenetic Map	16	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Weight Gain (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-butoxyethanol (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

asbestos (ISO)

azathioprine (ISO)

benzene-1,2,4-triol (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

cantharidin (ISO)

carmustine (ISO)

CGP 52608 (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) chloride (ISO)

copper(II) sulfate (ISO)

corticosterone (EXP)

coumarin (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

deoxynivalenol (ISO)

dibutyl phthalate (EXP,ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

endosulfan (EXP)

ethanol (ISO)

etoposide (ISO)

flutamide (EXP)

FR900359 (ISO)

genistein (ISO)

gentamycin (EXP)

lead(0) (ISO)

Licochalcone B (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nickel atom (ISO)

nimesulide (EXP)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (EXP)

perfluorooctanoic acid (EXP)

phenobarbital (EXP,ISO)

phenylmercury acetate (ISO)

progesterone (ISO)

quercetin (ISO)

rimonabant (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (EXP,ISO)

succimer (ISO)

sulforaphane (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thimerosal (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

undecane (EXP)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acetylcholine receptor signaling pathway (ISO)

cell growth involved in cardiac muscle cell development (IGI)

cytoskeleton organization (IBA)

Notch signaling pathway (IBA,ISO)

regulation of skeletal muscle acetylcholine-gated channel clustering (ISO)

Cellular Component

anchoring junction (IEA)

apical plasma membrane (IEA)

cytoplasm (IEA)

dendrite (IBA,IDA)

focal adhesion (IEA)

lamellipodium (IEA)

neuronal cell body (IBA,IDA)

perinuclear region of cytoplasm (IEA)

plasma membrane (IBA,IEA,ISO)

synapse (IBA,ISO)

Molecular Function

identical protein binding (ISO)

protein binding (IPI,ISO)

protein domain specific binding (ISO)

protein-macromolecule adaptor activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Cardiac fibroblast-derived microRNA passenger strand-enriched exosomes mediate cardiomyocyte hypertrophy.	Bang C, etal., J Clin Invest. 2014 May;124(5):2136-46. doi: 10.1172/JCI70577. Epub 2014 Apr 17.
2.	The Abl/Arg substrate ArgBP2/nArgBP2 coordinates the function of multiple regulatory mechanisms converging on the actin cytoskeleton.	Cestra G, etal., Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1731-6. Epub 2005 Jan 19.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	nArgBP2, a novel neural member of ponsin/ArgBP2/vinexin family that interacts with synapse-associated protein 90/postsynaptic density-95-associated protein (SAPAP).	Kawabe H, etal., J Biol Chem 1999 Oct 22;274(43):30914-8.
5.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	CAP (Cbl associated protein) regulates receptor-mediated endocytosis.	Tosoni D and Cestra G, FEBS Lett. 2009 Jan 22;583(2):293-300. doi: 10.1016/j.febslet.2008.12.047. Epub 2008 Dec 29.

Additional References at PubMed

PMID:21689717	PMID:22007191	PMID:22658674	PMID:23117660	PMID:26514267	PMID:26527617	PMID:27226294	PMID:29476059	PMID:31904090	PMID:35352799

Genomics

Comparative Map Data

Sorbs2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	53,167,795 - 53,481,300 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	53,167,827 - 53,358,986 (-)	Ensembl				GRCr8
mRatBN7.2	16	46,435,220 - 46,748,743 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	46,435,237 - 46,626,514 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	51,837,443 - 52,028,439 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	55,206,227 - 55,397,004 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	50,476,834 - 50,667,832 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	49,626,205 - 49,820,223 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	49,626,205 - 49,820,235 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	49,355,585 - 49,545,430 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	49,722,539 - 49,917,550 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	44,432,235 - 44,623,524 (-)	NCBI		Celera
RGSC_v3.1	16	49,722,613 - 49,917,626 (-)	NCBI
Cytogenetic Map	16	q11	NCBI

SORBS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	185,585,523 - 185,956,372 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	185,585,444 - 185,956,652 (-)	Ensembl			hg38	GRCh38
GRCh37	4	186,506,677 - 186,877,526 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	186,743,592 - 187,114,516 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	186,883,307 - 187,252,671	NCBI
Celera	4	183,831,196 - 184,201,888 (-)	NCBI		Celera
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	182,259,256 - 182,629,702 (-)	NCBI		HuRef
CHM1_1	4	186,483,030 - 186,854,309 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	188,926,307 - 189,297,353 (-)	NCBI		T2T-CHM13v2.0

Sorbs2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	45,960,470 - 46,280,943 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	45,960,825 - 46,280,943 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	45,507,788 - 45,827,906 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	45,507,788 - 45,827,906 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	46,593,149 - 46,913,258 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	47,006,441 - 47,326,723 (+)	NCBI		MGSCv36	mm8
Celera	8	48,191,097 - 48,511,228 (+)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	25.44	NCBI

Sorbs2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	23,371,143 - 23,503,654 (+)	Ensembl
ChiLan1.0	NW_004955403	23,295,887 - 23,503,654 (+)	NCBI	ChiLan1.0	ChiLan1.0

SORBS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	183,323,194 - 183,696,934 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	183,671,541 - 184,046,607 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	177,751,089 - 178,125,937 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	189,965,729 - 190,335,930 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	189,965,729 - 190,070,543 (-)	Ensembl			panPan2	panpan1.1

SORBS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	44,847,384 - 45,063,218 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	44,717,052 - 45,061,337 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	45,333,197 - 45,548,530 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	47,061,067 - 47,276,497 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	46,931,094 - 47,276,497 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	45,029,526 - 45,244,827 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	45,641,875 - 45,857,362 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	45,773,830 - 45,988,803 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sorbs2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	34,312,658 - 34,634,656 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	3,593,512 - 3,797,555 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	3,593,607 - 3,797,324 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SORBS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	46,585,602 - 46,795,038 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	46,585,599 - 46,910,679 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	53,377,736 - 53,516,595 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SORBS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	131,522,390 - 131,895,835 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	131,521,298 - 131,749,949 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	111,789,062 - 112,214,360 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sorbs2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	16,436,923 - 16,541,141 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624769	16,437,631 - 16,835,725 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sorbs2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	42,053,330 - 42,142,010 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sorbs2
1607 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	358
Count of miRNA genes:	235
Interacting mature miRNAs:	271
Transcripts:	ENSRNOT00000029628, ENSRNOT00000068069
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	44455123	89455123	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	36928782	81928782	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	41992064	86992064	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4234212	66955197	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	28468701	73468701	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	49099196	91442908	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	32361043	77361043	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4234212	53708481	Rat
631833	Sach2	Saccharin preference QTL 2	4	0.01	consumption behavior trait (VT:0002069)	calculated saccharin drink intake rate (CMO:0001613)	16	49757666	56898388	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	31058039	76058039	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	34398294	79398294	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	31885271	76885271	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	44455123	89455123	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17730818	72536785	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	15905802	60905802	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat

Markers in Region

AW532810

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	46,596,775 - 46,596,931 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	49,794,030 - 49,794,186	NCBI	Rnor6.0
Rnor_6.0	16	49,788,653 - 49,788,807	NCBI	Rnor6.0
Celera	16	44,593,745 - 44,593,900	UniSTS
RH 3.4 Map	16	457.0	UniSTS
Cytogenetic Map	16	q11	UniSTS

BE109620

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	46,471,079 - 46,471,234 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	49,662,015 - 49,662,169	NCBI	Rnor6.0
Rnor_5.0	16	49,391,395 - 49,391,549	UniSTS	Rnor5.0
RGSC_v3.4	16	49,758,349 - 49,758,503	UniSTS	RGSC3.4
Celera	16	44,468,049 - 44,468,203	UniSTS
RH 3.4 Map	16	456.9	UniSTS
Cytogenetic Map	16	q11	UniSTS

AW434052

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	46,435,276 - 46,435,467 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	49,626,213 - 49,626,403	NCBI	Rnor6.0
Rnor_5.0	16	49,355,593 - 49,355,783	UniSTS	Rnor5.0
RGSC_v3.4	16	49,722,547 - 49,722,737	UniSTS	RGSC3.4
Celera	16	44,432,243 - 44,432,433	UniSTS
RH 3.4 Map	16	457.0	UniSTS
Cytogenetic Map	16	q11	UniSTS

BE114613

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	46,546,851 - 46,547,024 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	49,737,769 - 49,737,941	NCBI	Rnor6.0
Rnor_5.0	16	49,466,481 - 49,466,653	UniSTS	Rnor5.0
RGSC_v3.4	16	49,834,146 - 49,834,318	UniSTS	RGSC3.4
Celera	16	44,543,702 - 44,543,874	UniSTS
RH 3.4 Map	16	457.3	UniSTS
Cytogenetic Map	16	q11	UniSTS

D8Mit297

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	46,596,211 - 46,596,325 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	49,788,421 - 49,788,534	NCBI	Rnor6.0
Rnor_5.0	16	49,515,948 - 49,516,061	UniSTS	Rnor5.0
Cytogenetic Map	16	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	57	59	6	321	157	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053770	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094137	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063274999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC108583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC114502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF026505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF396458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000029628 ⟹ ENSRNOP00000029182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,358,986 (-)	Ensembl
mRatBN7.2 Ensembl	16	46,435,269 - 46,626,450 (-)	Ensembl
Rnor_6.0 Ensembl	16	49,626,205 - 49,820,235 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096919 ⟹ ENSRNOP00000090759

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,245,881 (-)	Ensembl
mRatBN7.2 Ensembl	16	46,435,237 - 46,626,514 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111098 ⟹ ENSRNOP00000078055

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,249,422 (-)	Ensembl
mRatBN7.2 Ensembl	16	46,435,269 - 46,514,234 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111730 ⟹ ENSRNOP00000094779

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,328,496 (-)	Ensembl
mRatBN7.2 Ensembl	16	46,435,457 - 46,626,021 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113085 ⟹ ENSRNOP00000091476

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,245,559 (-)	Ensembl
mRatBN7.2 Ensembl	16	46,435,237 - 46,626,514 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115009 ⟹ ENSRNOP00000089017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,358,986 (-)	Ensembl
mRatBN7.2 Ensembl	16	46,435,237 - 46,626,514 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115122 ⟹ ENSRNOP00000080598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	46,435,237 - 46,626,514 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116775 ⟹ ENSRNOP00000083015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	46,435,237 - 46,567,298 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118135 ⟹ ENSRNOP00000077815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,174,925 - 53,328,496 (-)	Ensembl
mRatBN7.2 Ensembl	16	46,442,367 - 46,626,514 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120664 ⟹ ENSRNOP00000098297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,358,516 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120666 ⟹ ENSRNOP00000098299

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,358,986 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120667 ⟹ ENSRNOP00000098300

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	53,167,827 - 53,358,986 (-)	Ensembl

RefSeq Acc Id:

NM_053770 ⟹ NP_446222

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,827 - 53,358,983 (-)	NCBI
mRatBN7.2	16	46,435,269 - 46,626,447 (-)	NCBI
Rnor_6.0	16	49,626,205 - 49,820,223 (-)	NCBI
Rnor_5.0	16	49,355,585 - 49,545,430 (-)	NCBI
RGSC_v3.4	16	49,722,539 - 49,917,550 (-)	RGD
Celera	16	44,432,235 - 44,623,524 (-)	RGD

Sequence:

show sequence

GAATTCGGCACGAGGAAAAATCTTTGGAGAGAAGAGAGCCACAGTGAGCACGCTAGTGCACAAT
TATTGCAGCCACGTGTGCCCGCAAGCTGGCCCTGCGACAAGCTGTTGAGTGCTGTTGCAATTAG
CTGATTGGAGAACGGGGACTGCAGGGTGATAATGCTGCGTCTCCGCTCGCGGGCACCAGGAAAG
GGTTTTGTCTCGGGAAGGCAAGTCTTCCCTGCACAGTTATCTCAGCAGCTCCCTAGCTGAAGAG
AACTGGGGGCTCTAAAGGGAGGGGGTCGCACTGTGCGAGCACAGATTCTGTGCCAGGCTGTTGC
TTATGAACCGCACGTCTGGGAAAGCAGGTGTGTGCTCGGACGGGCACTGGGCTGGAACGCAGGC
GGCGGCTCTCGGGTTCACCTGCTTCCTGTTAACAGACTGTTGGCTCACAGAGCATCTGCTCTTA
CACGCTGAAACTGCGGCTGAGAAAGGGTTCCCGGCATCCCACTTGACTGACGGAGGCACTTGGA
TTGGACTTAATCTTAAACCTCTGGAGGTCAAGACCTTTTAAAAAGGGCTAAATAAACAATCTAC
ATGTTAAAGGCCAGCGACTCCTACTTCCTCTGTTGGAGCAACTGTGAAGTCCAGCCTCTTCTAG
GAAAACTGAAGACTTTAATAACACACCGTTCAAGGTGAAAATGAATACAGATAGCGGTGGGTGT
GCTCGCAAACGTGCCGCCATGTCTGTCACGTTAACATCTGTGAAGAGAGTTCAAAGTTCTCCAA
ACCTATTGGCTGCAGGGCGTGAGTCTCACTCTCCGGACTCAGCTTGGAGATCTTACAATGGTCG
AAATCCAGAGACACTGAACGGAGATGCCACATATTCCTCTCTTGCAGCAAAAGGTTTTAGAAGC
GTTCGACCAAACCTGCAAGACAAAAAGTCACCAACCCAGAGCCATATCACTATCAACGGCAACT
CTGGTGGCGCCGTGAGTCCAGTGAGTTACTATCAGAGGCCATTCTCCCCTTCTGCATACTCCCT
CCCAGCCTCACTCAACTCCAGCATTATCATGCCACACGGCAGGTCGCTTGATTCTGCGGAGACA
TATTCCCAGCATGCCCAGTCGCTAGACGGCACCATGGGAAGCTCCATCCCACTCTACAGATCCT
CCGAGGAAGAGAAGAGGGTCACAGTCATCAAAGCCCCGCATTACCCAGGGATCGGCCCTGTGGA
TGAGTCTGGAATCCCCACAGCCATTAGAACGACAGTTGACCGGCCGAAGGACTGGTACAAGACA
ATGTTTAAACAAATTCACATGGTACACAAGCCGGATGAGGACACAGACATGTATAATACTCCTT
ACACATACAATGCAGGTCTGTACAACTCGCCCTACAGTGCTCAGTCACATCCTGCTGCAAAGAC
CCAGACCTACAGACCTCTTTCCAAAAGCCACTCGGACAATGGCACCGATGCTTTTAAGGAGGCA
CCCTCACCAGTGCCTCCCCCACACGTTCCACCACGACCAAGAGATCAGTCTTCAACAGAAAAGC
ATGACTGGGATCCCCCAGACAGAAAGGTGGACACCAGGAAATTTCGATCGGAGCCAAGGAGTAT
TTTTGAATACGAGCCTGGGAAGTCATCCATCCTGCAGCACGAAAGACCCGTCTCCGTCTACCAG
TCTTCCATAGACAGAAGCTTGGAAAGACCCAGCAGCTCTGCAAGCATGGCGGGTGACTTTAGAA
AACGGAGGAAGAGTGAACCTGCAGTGGGCCCGCCCAGGGGCTTGGGGGATCACAGTTCAAGCAG
GACCAGCCCCGGCCGGGCAGACCTCCCAGGATCAAGTTCCACCTTTACCACGTCTTTCATTAGT
TCTTCTCCTTCCTCTCCCTCGAGAGCACAAGGTGGGGATGATAGCAAAATGTGTCCGCCCCTTT
GCAGTTACTCGGGGCTCAATGGCTCGCCCTCTAGTGAGTTAGAGTGCTGCGGCGCTTATAGAAG
GCACTTGGACGTCCCCCAGGACTCTCAAAGGGCCATCACTTTCAAGAACGGCTGGCAAATGGCC
CGGCAAAATGCAGAGATCTGGAGTAGCACTGAAGAGGCGGTTTCCCCCAAAATCAAATCACGAA
GCTGTGACGATCTCCTGAATGATGACTGCGGCAGCTTCCCAGACCCTAAAACCAAGTCAGAAAG
CATGGGTTCTCTGTTATGTGACGAAGGCTCCAAAGAGAGCGACCCCATGACGTGGACTTCCCCC
TACATCCCGGAAGTGTGCGGGAACAGCAGATCTAGGCTCAAACATAGGTCAGCCCATAACGCCC
CAGGCTTCCTCAAAATGTACAAGAAAATGCACCGCATCAACCGCAAGGATTTGATGAACTCGGA
GGTCATTTGCTCTGTGAAATCCAGGATCCTTCAGTACGAGAAGGAACAGCAGCACAGGGGGCTG
CTCCATGGATGGAGCCAGTCGTCCACCGAGGAGGTGCCCAGGGACGTGGTACCCACTCGCATCT
CGGAGTTTGAGAAGCTGATTCAGAAGTCAAAGTCTATGCCCAATCTAGGAGATGAAATGTTATC
TCCTGTAACCCTAGAACCCCCACAAAATGGTTTGTGCCCCAAGAGGCGATTTTCTATTGAGTCT
CTGCTGGAGGAGGAAACTCAGGTCCGACACCCTTCTCAGGGTCAGCGAAGCTGCAAGTCGAACA
CCCTGGTACCCATCCACATCGAGGTCACCAGCGATGAGCAACCTAGAACACATATGGAGTTTTC
CGACAGTGACCAAGATGGGGTTGTGTCTGACCACAGCGATAACGTCCACGTCGAAAGGTCGTCC
TTTTGTAGTGAAAGTGACTTCGACCACTTTTCATTCACATCCTCTGAAAGTTTCTACGGATCCA
GCCATCACCACCACCATCACCACCACCATCACGGACACTTCATCAGTTCCTGCAAAGGCCGATG
CCCCGCTTCTTACACTCGATTTACCACGATGTTAAAACACGAAAGAGCTAAGCATGAAAATATT
GACCGACCCAGAAGGCAAGACATGGATCCTGGCCTATCTAAACTCGCGTTTCTAGTCAGCCCTG
TGCCTTTCCGAAGGAAAAAAGTTTTGACTCCCCAAAAACAAACTGAGCAGGCAAAATGCAAAGC
CTCGGTAGTTGAGGCTCTGGACTCTGCCCTTAAAGACATTTGCGACCAAATAAAAGCTGAAAAG
CGGAGAGGAAGCTTGCCGGACAACAGCATCCTGCACAGGCTTATTAGTGAACTGCTGCCACAGA
TTCCTAAGAGGAATTCATCTCTTAATGCTCTAAAAAGGAGCCCCATGCACCAGCCTTTCCACCC
ACTGCCTCAAGATGGTGCTATTCATTGTCCCCTGTACCAAAATGATTGTGGGAGAATGCCTCAC
AGTGCCTCTTTCCCAGACGTGGACACGACCAGCAGCTACCACGCACAGGACTATGGTAGTGTGC
TGAGTCTCCAAGATCACGAGTCCCCTAGAAGTTACTCGTCTACTCTGACTGACTTGGGAAGAAG
TGTATCACGGGAACGAAGAGGAACTCCAGAAAAAGAGGTAAAATTGCCTGCAAAAGCTGTCTAT
GATTTCAAAGCTCAGACTTCTAAGGAGCTGTCATTTAAGAAAGGAGACACCGTCTACATCCTCA
GGAAAATTGACCAGAACTGGTATGAGGGGGAGCACCACGGAAGAGTGGGCATTTTCCCAATCTC
ATACGTAGAGAAACTAACACCCCCAGAAAAAGCGCAGCCCGCGAGACCACCACCCCCAGTCCAG
CCGGGAGAGATTGGAGAAGCCATAGCCAAGTACAACTTCAATGCAGACACAAATGTGGAACTCT
CCCTGAGAAAGGGTGACAGGATTATTCTTCTCAAAAGAGTTGATCAAAACTGGTATGAAGGTAA
AATCCCAGGAACCAACAGACAAGGCATCTTCCCTGTCTCCTACGTAGAAGTTGTCAAGAGGAAC
ACGAAAGGTTCTGAGGATTACCCCGACCCTCCTCTACCCCACAGCTACTCCAGTGATAGAATTT
ACAGCCTAAGCTCCAATAAGCCACAGCGTCCTGTGTTCTCTCACGAAAACATTCAAGGTGGAGG
AGAACCGTTTCAGGCTCTGTATAACTATACTCCTAGGAATGAAGATGAGCTGGAACTCAGAGAA
AGTGATGTCGTAGATGTCATGGAAAAGTGTGATGACGGATGGTTCGTGGGAACTTCAAGAAGAA
CCAAATTCTTTGGTACTTTTCCTGGAAACTATGTCAAAAGGCTGTGACTCACCTCACTCCTAAT
TTATGCCACATTTCAGCCACACATCTGCATTAACCCACCTGAAACGTCCCAGGAGGCCTGTTGC
TGCCTCGCCTTATGGTTTCCCAATAGCCCATTACCATCTCCATCTGCTGCCACCAAATCACCAG
CAGAGGGACTGCCGCTGTGAGCCTTAGGGAGGCTGGGAGCCTTAGAGAAAAGTGGCAAAACTTA
CACCCACATAAATATTCAGTCTCCTGCTTTCTGCCCTGAACTTTGAAATGCCTGTATATGGAAT
CAGAATGAAAATGATCATACTTTCAAAAAAGTGAAATAATTAAGGAAGAAAGAAAGAGAAAAGA
AATAGAGAGACTCTTCAGGAGGCTGTCTGGCCTCATGGCTGAATCTCCACCTCTCTGGAAGGTG
TACTGTCCTCAGGAAGCCTGAAGATTGTTTTTTTTCTGAAATGCTATGGTTCCAGTTCTCACTC
TCATCTAGGCGGTATATTTTCCTTTCACGAGTTTGCCTAGCGCTCGGGTTTACACTACATGACA
ACTATACTTCGGCTGTTGTTTGCTTGCACTTATTATTCCTTGTTTCATGCACAGTGATCACAAA
ATCCAGAGTGCCTAGGGAAGGTTCACTGGTTCCACTGGTTCGAGTGTGATTTTTGTTGACTGCA
TTATATTTTCACACGGGGAGGGGGGTCTTTCCCCTGCCCACTTTTTTGTGCTTATTAGAAGTGC
AAACAGTGAGCAACTGAGAGCTCAGCCACACCACAGGACAAATCCGTGTTGTGAATTCGCATTG
CTGTTTTGTGTATTAAGGTGTAATCATCAGCTTCATGGACAACAAGCTATTAGTGATTTCTTTA
CCTGTTAAAACTTACAGGCAGTGCTAGTGAGTTAGGCAGAAAGNTGACAGTAATACCAGTAGGT
GAGCTTCACTGCGTGCATGCTCACACGTTTGAGNTTGTATGAGGACATATAATTCATATGCTAT
GTTGTACATTTTATGGAAATATAAGAGAATCCCACATTATTTTATAGAGTACTTCAGGAGCATC
CTAAGTGTTAAGGCTGGCTTTAGCAAGGATTATGATCAATACAACTATTTTTACTACAATAATT
ATTTTTCTTCTATGAGACCCAGAATCCTGACTCCACTTGCAGACAGGAATATATATGTTGAGCC
TGACTTTTTTTTCTGGTATATGTAAAATACTTCCCAGGAATACATTGGGCACTTTTGGGAATAA
TGGTTAAATCATTCAGGTTGTGCTTCCTGCCCCCAAAACAGATCTACAAAATGATACCAAACCT
GAAAGATTTAACGGATTTACGGTGCCTGCATTCCACACAACCTCACACTTAGCTTTGTATTTCA
AATGAATTTGCATAAAANCTGTTCACTTTANCACCTTATAGTCAAAACTTTTTATGGCTTTCCT
CCCATGGGCAATGCTTGATCTTCCCAACATATAAACTCTGGCATATTTTGTTCATATGTTTGTT
CCTTTTTGGTTGTACAGACTATTTACTTGTTCAGAAAACATCGAGATCTCCCAATTTGTTCTTT
ACCCCGCCCTTAAAAGGAATTTAAACTCTTTCAGAAGATCGCCCTTCACCACATCTCCACAGAT
CACAAGCTAAGGTGAATCTGGAATATANCGTCTGCACAAAATTTTGTGACTCAGAAAGANCTTT
GTAACTACNCTGAAATACATATAATAACAATGTTCCAGTTACAGAGGAATATTGTTGGGGCAGG
AAGTGAAGAAACANCTTCAAGAAACCCACTTTACNCTCCAGTTCACAACTAGCTTTATATTAGA
AAAACTTGGGATTGGAAAGTCAGCCAGCCAGCCGGCCACCTGCAGCNTTGTTGATAAATGAATA
CTTTTTCACACCATTTATGAAAACAAANCTTCAACTCTGTTGCCTGTTATATTTAAGAAAAATT
GCTGTTTCTACTCNCTGTATCTGATTTTAAAAGGAAAAAAATATTCACGCCTGGCTTTCAGGAC
ATTGACTTTGAATNCTTACGAGCAAAGGNCGTTGTGTTTTTCTTGCNCGTGCCGAATTC

hide sequence

RefSeq Acc Id:

XM_039094137 ⟹ XP_038950065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,481,300 (-)	NCBI
mRatBN7.2	16	46,435,220 - 46,559,755 (-)	NCBI

RefSeq Acc Id:

XM_039094138 ⟹ XP_038950066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI
mRatBN7.2	16	46,435,220 - 46,559,758 (-)	NCBI

RefSeq Acc Id:

XM_063274989 ⟹ XP_063131059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274991 ⟹ XP_063131061

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274992 ⟹ XP_063131062

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274993 ⟹ XP_063131063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274994 ⟹ XP_063131064

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274995 ⟹ XP_063131065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274996 ⟹ XP_063131066

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274997 ⟹ XP_063131067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274998 ⟹ XP_063131068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063274999 ⟹ XP_063131069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275000 ⟹ XP_063131070

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275002 ⟹ XP_063131072

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,481,279 (-)	NCBI

RefSeq Acc Id:

XM_063275003 ⟹ XP_063131073

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275004 ⟹ XP_063131074

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275005 ⟹ XP_063131075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275006 ⟹ XP_063131076

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275007 ⟹ XP_063131077

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275008 ⟹ XP_063131078

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275009 ⟹ XP_063131079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275010 ⟹ XP_063131080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275011 ⟹ XP_063131081

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275012 ⟹ XP_063131082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275013 ⟹ XP_063131083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275014 ⟹ XP_063131084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275015 ⟹ XP_063131085

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275016 ⟹ XP_063131086

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275017 ⟹ XP_063131087

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275018 ⟹ XP_063131088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275019 ⟹ XP_063131089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275020 ⟹ XP_063131090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275021 ⟹ XP_063131091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275022 ⟹ XP_063131092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275023 ⟹ XP_063131093

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275024 ⟹ XP_063131094

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275025 ⟹ XP_063131095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275026 ⟹ XP_063131096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275027 ⟹ XP_063131097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275028 ⟹ XP_063131098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275029 ⟹ XP_063131099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275030 ⟹ XP_063131100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275031 ⟹ XP_063131101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275032 ⟹ XP_063131102

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275033 ⟹ XP_063131103

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275034 ⟹ XP_063131104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275035 ⟹ XP_063131105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275036 ⟹ XP_063131106

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

RefSeq Acc Id:

XM_063275037 ⟹ XP_063131107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,167,795 - 53,359,893 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446222	(Get FASTA)	NCBI Sequence Viewer
	XP_038950065	(Get FASTA)	NCBI Sequence Viewer
	XP_038950066	(Get FASTA)	NCBI Sequence Viewer
	XP_063131059	(Get FASTA)	NCBI Sequence Viewer
	XP_063131061	(Get FASTA)	NCBI Sequence Viewer
	XP_063131062	(Get FASTA)	NCBI Sequence Viewer
	XP_063131063	(Get FASTA)	NCBI Sequence Viewer
	XP_063131064	(Get FASTA)	NCBI Sequence Viewer
	XP_063131065	(Get FASTA)	NCBI Sequence Viewer
	XP_063131066	(Get FASTA)	NCBI Sequence Viewer
	XP_063131067	(Get FASTA)	NCBI Sequence Viewer
	XP_063131068	(Get FASTA)	NCBI Sequence Viewer
	XP_063131069	(Get FASTA)	NCBI Sequence Viewer
	XP_063131070	(Get FASTA)	NCBI Sequence Viewer
	XP_063131072	(Get FASTA)	NCBI Sequence Viewer
	XP_063131073	(Get FASTA)	NCBI Sequence Viewer
	XP_063131074	(Get FASTA)	NCBI Sequence Viewer
	XP_063131075	(Get FASTA)	NCBI Sequence Viewer
	XP_063131076	(Get FASTA)	NCBI Sequence Viewer
	XP_063131077	(Get FASTA)	NCBI Sequence Viewer
	XP_063131078	(Get FASTA)	NCBI Sequence Viewer
	XP_063131079	(Get FASTA)	NCBI Sequence Viewer
	XP_063131080	(Get FASTA)	NCBI Sequence Viewer
	XP_063131081	(Get FASTA)	NCBI Sequence Viewer
	XP_063131082	(Get FASTA)	NCBI Sequence Viewer
	XP_063131083	(Get FASTA)	NCBI Sequence Viewer
	XP_063131084	(Get FASTA)	NCBI Sequence Viewer
	XP_063131085	(Get FASTA)	NCBI Sequence Viewer
	XP_063131086	(Get FASTA)	NCBI Sequence Viewer
	XP_063131087	(Get FASTA)	NCBI Sequence Viewer
	XP_063131088	(Get FASTA)	NCBI Sequence Viewer
	XP_063131089	(Get FASTA)	NCBI Sequence Viewer
	XP_063131090	(Get FASTA)	NCBI Sequence Viewer
	XP_063131091	(Get FASTA)	NCBI Sequence Viewer
	XP_063131092	(Get FASTA)	NCBI Sequence Viewer
	XP_063131093	(Get FASTA)	NCBI Sequence Viewer
	XP_063131094	(Get FASTA)	NCBI Sequence Viewer
	XP_063131095	(Get FASTA)	NCBI Sequence Viewer
	XP_063131096	(Get FASTA)	NCBI Sequence Viewer
	XP_063131097	(Get FASTA)	NCBI Sequence Viewer
	XP_063131098	(Get FASTA)	NCBI Sequence Viewer
	XP_063131099	(Get FASTA)	NCBI Sequence Viewer
	XP_063131100	(Get FASTA)	NCBI Sequence Viewer
	XP_063131101	(Get FASTA)	NCBI Sequence Viewer
	XP_063131102	(Get FASTA)	NCBI Sequence Viewer
	XP_063131103	(Get FASTA)	NCBI Sequence Viewer
	XP_063131104	(Get FASTA)	NCBI Sequence Viewer
	XP_063131105	(Get FASTA)	NCBI Sequence Viewer
	XP_063131106	(Get FASTA)	NCBI Sequence Viewer
	XP_063131107	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB81527	(Get FASTA)	NCBI Sequence Viewer
	AAK81861	(Get FASTA)	NCBI Sequence Viewer
	EDL78860	(Get FASTA)	NCBI Sequence Viewer
	EDL78861	(Get FASTA)	NCBI Sequence Viewer
	EDL78862	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000029182
	ENSRNOP00000077815
	ENSRNOP00000089017
	ENSRNOP00000090759
	ENSRNOP00000091476
	ENSRNOP00000094779
	ENSRNOP00000098297
	ENSRNOP00000098299
	ENSRNOP00000098300
GenBank Protein	O35413	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446222 ⟸ NM_053770

- UniProtKB:

Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRESHSPDSAWRSYNGRNPETLNGDATYSS
LAAKGFRSVRPNLQDKKSPTQSHITINGNSGGAVSPVSYYQRPFSPSAYSLPASLNSSIIMPHG
RSLDSAETYSQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVD
RPKDWYKTMFKQIHMVHKPDEDTDMYNTPYTYNAGLYNSPYSAQSHPAAKTQTYRPLSKSHSDN
GTDAFKEAPSPVPPPHVPPRPRDQSSTEKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQH
ERPVSVYQSSIDRSLERPSSSASMAGDFRKRRKSEPAVGPPRGLGDHSSSRTSPGRADLPGSSS
TFTTSFISSSPSSPSRAQGGDDSKMCPPLCSYSGLNGSPSSELECCGAYRRHLDVPQDSQRAIT
FKNGWQMARQNAEIWSSTEEAVSPKIKSRSCDDLLNDDCGSFPDPKTKSESMGSLLCDEGSKES
DPMTWTSPYIPEVCGNSRSRLKHRSAHNAPGFLKMYKKMHRINRKDLMNSEVICSVKSRILQYE
KEQQHRGLLHGWSQSSTEEVPRDVVPTRISEFEKLIQKSKSMPNLGDEMLSPVTLEPPQNGLCP
KRRFSIESLLEEETQVRHPSQGQRSCKSNTLVPIHIEVTSDEQPRTHMEFSDSDQDGVVSDHSD
NVHVERSSFCSESDFDHFSFTSSESFYGSSHHHHHHHHHHGHFISSCKGRCPASYTRFTTMLKH
ERAKHENIDRPRRQDMDPGLSKLAFLVSPVPFRRKKVLTPQKQTEQAKCKASVVEALDSALKDI
CDQIKAEKRRGSLPDNSILHRLISELLPQIPKRNSSLNALKRSPMHQPFHPLPQDGAIHCPLYQ
NDCGRMPHSASFPDVDTTSSYHAQDYGSVLSLQDHESPRSYSSTLTDLGRSVSRERRGTPEKEV
KLPAKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQP
ARPPPPVQPGEIGEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVS
YVEVVKRNTKGSEDYPDPPLPHSYSSDRIYSLSSNKPQRPVFSHENIQGGGEPFQALYNYTPRN
EDELELRESDVVDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKRL

hide sequence

Ensembl Acc Id:

ENSRNOP00000029182 ⟸ ENSRNOT00000029628

RefSeq Acc Id:	XP_038950066 ⟸ XM_039094138
- Peptide Label:	isoform X16
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038950065 ⟸ XM_039094137
- Peptide Label:	isoform X15
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot), A6JPR1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000091476 ⟸ ENSRNOT00000113085

Ensembl Acc Id:

ENSRNOP00000080598 ⟸ ENSRNOT00000115122

Ensembl Acc Id:

ENSRNOP00000094779 ⟸ ENSRNOT00000111730

Ensembl Acc Id:

ENSRNOP00000089017 ⟸ ENSRNOT00000115009

Ensembl Acc Id:

ENSRNOP00000078055 ⟸ ENSRNOT00000111098

Ensembl Acc Id:

ENSRNOP00000077815 ⟸ ENSRNOT00000118135

Ensembl Acc Id:

ENSRNOP00000083015 ⟸ ENSRNOT00000116775

Ensembl Acc Id:

ENSRNOP00000090759 ⟸ ENSRNOT00000096919

RefSeq Acc Id:	XP_063131072 ⟸ XM_063275002
- Peptide Label:	isoform X12
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063131106 ⟸ XM_063275036
- Peptide Label:	isoform X46
- UniProtKB:	A0A8I5ZQ23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131104 ⟸ XM_063275034
- Peptide Label:	isoform X44
- UniProtKB:	A0A8I5ZV05 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131101 ⟸ XM_063275031
- Peptide Label:	isoform X41
- UniProtKB:	A6JPQ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131102 ⟸ XM_063275032
- Peptide Label:	isoform X42
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131099 ⟸ XM_063275029
- Peptide Label:	isoform X40
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131098 ⟸ XM_063275028
- Peptide Label:	isoform X39
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131089 ⟸ XM_063275019
- Peptide Label:	isoform X31
- UniProtKB:	A0A8I5ZQ23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131097 ⟸ XM_063275027
- Peptide Label:	isoform X38
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131095 ⟸ XM_063275025
- Peptide Label:	isoform X37
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131094 ⟸ XM_063275024
- Peptide Label:	isoform X36
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131075 ⟸ XM_063275005
- Peptide Label:	isoform X17
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063131088 ⟸ XM_063275018
- Peptide Label:	isoform X30
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131087 ⟸ XM_063275017
- Peptide Label:	isoform X29
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131080 ⟸ XM_063275010
- Peptide Label:	isoform X22
- UniProtKB:	A0A8I6AA99 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131079 ⟸ XM_063275009
- Peptide Label:	isoform X21
- UniProtKB:	A0A8I6AA99 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131093 ⟸ XM_063275023
- Peptide Label:	isoform X35
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131092 ⟸ XM_063275022
- Peptide Label:	isoform X34
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131074 ⟸ XM_063275004
- Peptide Label:	isoform X14
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063131086 ⟸ XM_063275016
- Peptide Label:	isoform X28
- UniProtKB:	A0A8I5ZQ23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131091 ⟸ XM_063275021
- Peptide Label:	isoform X33
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131073 ⟸ XM_063275003
- Peptide Label:	isoform X13
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot), F1LPM3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131070 ⟸ XM_063275000
- Peptide Label:	isoform X11
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063131085 ⟸ XM_063275015
- Peptide Label:	isoform X27
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131084 ⟸ XM_063275014
- Peptide Label:	isoform X26
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131068 ⟸ XM_063274998
- Peptide Label:	isoform X9
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063131067 ⟸ XM_063274997
- Peptide Label:	isoform X8
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063131083 ⟸ XM_063275013
- Peptide Label:	isoform X25
- UniProtKB:	A0A8I6AFA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131082 ⟸ XM_063275012
- Peptide Label:	isoform X24
- UniProtKB:	A0A8I6AFA3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131066 ⟸ XM_063274996
- Peptide Label:	isoform X7
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063131081 ⟸ XM_063275011
- Peptide Label:	isoform X23
- UniProtKB:	A0A8I6AA99 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131078 ⟸ XM_063275008
- Peptide Label:	isoform X20
- UniProtKB:	A0A8I6AA99 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131077 ⟸ XM_063275007
- Peptide Label:	isoform X19
- UniProtKB:	A0A8I6AA99 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131076 ⟸ XM_063275006
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I6AA99 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131064 ⟸ XM_063274994
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063131061 ⟸ XM_063274991
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063131065 ⟸ XM_063274995
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063131063 ⟸ XM_063274993
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063131062 ⟸ XM_063274992
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063131059 ⟸ XM_063274989
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063131107 ⟸ XM_063275037
- Peptide Label:	isoform X46
- UniProtKB:	A0A8I5ZQ23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131105 ⟸ XM_063275035
- Peptide Label:	isoform X45
- UniProtKB:	A0A8I5ZQ23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131103 ⟸ XM_063275033
- Peptide Label:	isoform X43
- UniProtKB:	A0A8I5ZV05 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131090 ⟸ XM_063275020
- Peptide Label:	isoform X32
- UniProtKB:	A0A8I6ABV1 (UniProtKB/TrEMBL), A0A8I5ZQ23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131100 ⟸ XM_063275030
- Peptide Label:	isoform X40
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131096 ⟸ XM_063275026
- Peptide Label:	isoform X37
- UniProtKB:	A6JPR0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063131069 ⟸ XM_063274999
- Peptide Label:	isoform X10
- UniProtKB:	Q923T8 (UniProtKB/Swiss-Prot), O35413 (UniProtKB/Swiss-Prot)

Ensembl Acc Id:

ENSRNOP00000098297 ⟸ ENSRNOT00000120664

Ensembl Acc Id:

ENSRNOP00000098300 ⟸ ENSRNOT00000120667

Ensembl Acc Id:

ENSRNOP00000098299 ⟸ ENSRNOT00000120666

Protein Domains

SH3 SoHo

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35413-F1-model_v2	AlphaFold	O35413	1-1196	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700106

Promoter ID:

EPDNEW_R10630

Type:

multiple initiation site

Name:

Sorbs2_1

Description:

sorbin and SH3 domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	49,819,808 - 49,819,868	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620061	AgrOrtholog
BioCyc Gene	G2FUF-11322	BioCyc
Ensembl Genes	ENSRNOG00000013391	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000029628	ENTREZGENE
	ENSRNOT00000096919	ENTREZGENE
	ENSRNOT00000111730	ENTREZGENE
	ENSRNOT00000113085	ENTREZGENE
	ENSRNOT00000115009	ENTREZGENE
	ENSRNOT00000118135	ENTREZGENE
	ENSRNOT00000120664	ENTREZGENE
	ENSRNOT00000120666	ENTREZGENE
	ENSRNOT00000120667	ENTREZGENE
Gene3D-CATH	SH3 Domains	UniProtKB/Swiss-Prot
InterPro	Endophilin_SH3RF	UniProtKB/Swiss-Prot
	SH3-like_dom_sf	UniProtKB/Swiss-Prot
	SH3_domain	UniProtKB/Swiss-Prot
	SoHo_dom	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
KEGG Report	rno:114901	UniProtKB/Swiss-Prot
NCBI Gene	114901	ENTREZGENE
PANTHER	PTHR14167:SF56	UniProtKB/Swiss-Prot
	SH3 DOMAIN-CONTAINING	UniProtKB/Swiss-Prot
Pfam	SH3_1	UniProtKB/Swiss-Prot
	SH3_9	UniProtKB/Swiss-Prot
	Sorb	UniProtKB/Swiss-Prot
PhenoGen	Sorbs2	PhenoGen
PRINTS	P67PHOX	UniProtKB/Swiss-Prot
	SH3DOMAIN	UniProtKB/Swiss-Prot
PROSITE	SH3	UniProtKB/Swiss-Prot
	SOHO	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000013391	RatGTEx
SMART	SH3	UniProtKB/Swiss-Prot
	Sorb	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF50044	UniProtKB/Swiss-Prot
UniProt	A0A8I5XWJ4_RAT	UniProtKB/TrEMBL
	A0A8I5YCM3_RAT	UniProtKB/TrEMBL
	A0A8I5ZQ23	ENTREZGENE
	A0A8I5ZV05	ENTREZGENE
	A0A8I6AA99	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ABV1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AFA3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AN94_RAT	UniProtKB/TrEMBL
	A0ABK0KW41_RAT	UniProtKB/TrEMBL
	A0ABK0L6Z6_RAT	UniProtKB/TrEMBL
	A0ABK0LBD9_RAT	UniProtKB/TrEMBL
	A6JPQ9	ENTREZGENE, UniProtKB/TrEMBL
	A6JPR0	ENTREZGENE, UniProtKB/TrEMBL
	A6JPR1	ENTREZGENE, UniProtKB/TrEMBL
	F1LPM3	ENTREZGENE, UniProtKB/TrEMBL
	O35413	ENTREZGENE
	Q923T8	ENTREZGENE
	SRBS2_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q923T8	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2010-04-20	Sorbs2	sorbin and SH3 domain containing 2	Argbp2	Arg/Abl-interacting protein ArgBP2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Argbp2	Arg/Abl-interacting protein ArgBP2			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Argbp2	Arg/Abl-interacting protein ArgBP2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD