Nde1 (nudE neurodevelopment protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nde1 (nudE neurodevelopment protein 1) Rattus norvegicus
Analyze
Symbol: Nde1
Name: nudE neurodevelopment protein 1
RGD ID: 620038
Description: Enables protein domain specific binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; nervous system development; and vesicle transport along microtubule. Predicted to act upstream of or within forebrain development and neuroblast proliferation. Predicted to be located in spindle pole centrosome and synapse. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Human ortholog(s) of this gene implicated in lissencephaly 4. Orthologous to human NDE1 (nudE neurodevelopment protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LIS1-interacting protein NUDE1; LOC103690118; nuclear distribution gene E homolog (Aspergillus); nuclear distribution gene E homolog 1; nuclear distribution gene E homolog 1 (A nidulans); nuclear distribution protein nudE homolog 1; nuclear distribution protein nudE homolog 1-like; Nude; nudE nuclear distribution E homolog 1; nudE nuclear distribution E homolog 1 (A. nidulans); nudE nuclear distribution gene E homolog 1; nudE nuclear distribution gene E homolog 1 (A. nidulans); rNudE
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8101,347,010 - 1,391,167 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl101,347,018 - 1,383,447 (-)EnsemblGRCr8
mRatBN7.210839,788 - 883,946 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10839,788 - 883,869 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx105,536,557 - 5,572,975 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01034,992,867 - 35,029,285 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010852,733 - 889,160 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010860,513 - 904,624 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10860,521 - 896,938 (-)Ensemblrn6Rnor6.0
Rnor_5.01011,539,735 - 11,584,847 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01013,001 - 24,016 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410777,877 - 814,260 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1011,429,415 - 11,465,811 (-)NCBICelera
RGSC_v3.110777,876 - 814,260 (-)NCBI
Cytogenetic Map10q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4-phenylbutyric acid  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (EXP)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fluoranthene  (ISO)
FR900359  (ISO)
glyphosate  (ISO)
menadione  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methylformamide  (ISO)
nitrates  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
phenylmercury acetate  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
sodium arsenate  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
tributylstannane  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Direct association of LIS1, the lissencephaly gene product, with a mammalian homologue of a fungal nuclear distribution protein, rNUDE. Kitagawa M, etal., FEBS Lett 2000 Aug 11;479(1-2):57-62.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11163258   PMID:12477932   PMID:15473967   PMID:15489334   PMID:15571978   PMID:16107726   PMID:17202468   PMID:17600710   PMID:18469343   PMID:18983980   PMID:19468067   PMID:19946888  
PMID:21399614   PMID:21529752   PMID:21911489   PMID:22843697   PMID:27553190  


Genomics

Comparative Map Data
Nde1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8101,347,010 - 1,391,167 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl101,347,018 - 1,383,447 (-)EnsemblGRCr8
mRatBN7.210839,788 - 883,946 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10839,788 - 883,869 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx105,536,557 - 5,572,975 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01034,992,867 - 35,029,285 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010852,733 - 889,160 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.010860,513 - 904,624 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10860,521 - 896,938 (-)Ensemblrn6Rnor6.0
Rnor_5.01011,539,735 - 11,584,847 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01013,001 - 24,016 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410777,877 - 814,260 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1011,429,415 - 11,465,811 (-)NCBICelera
RGSC_v3.110777,876 - 814,260 (-)NCBI
Cytogenetic Map10q11NCBI
NDE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381615,643,382 - 15,726,353 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1615,643,267 - 15,734,691 (+)Ensemblhg38GRCh38
GRCh371615,737,239 - 15,820,210 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361615,651,605 - 15,726,491 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341615,651,604 - 15,726,490NCBI
Celera1615,417,601 - 15,500,696 (+)NCBICelera
Cytogenetic Map16p13.11NCBI
HuRef1615,130,950 - 15,213,642 (+)NCBIHuRef
CHM1_11615,821,504 - 15,904,590 (+)NCBICHM1_1
T2T-CHM13v2.01615,648,287 - 15,731,290 (+)NCBIT2T-CHM13v2.0
Nde1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,981,139 - 14,010,792 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,981,139 - 14,010,792 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381614,163,275 - 14,192,928 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1614,163,275 - 14,192,928 (+)Ensemblmm10GRCm38
MGSCv371614,163,368 - 14,193,021 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361614,083,053 - 14,106,144 (+)NCBIMGSCv36mm8
Celera1614,769,808 - 14,799,423 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.7NCBI
Nde1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955442495,704 - 542,976 (+)Ensembl
ChiLan1.0NW_004955442495,704 - 530,296 (+)NCBIChiLan1.0ChiLan1.0
NDE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21815,700,179 - 15,781,380 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11619,483,154 - 19,564,415 (+)NCBINHGRI_mPanPan1
PanPan1.11615,948,881 - 16,004,208 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1615,948,881 - 16,027,986 (+)EnsemblpanPan2panpan1.1
NDE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,143,244 - 28,186,069 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl628,143,244 - 28,186,051 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha629,506,656 - 29,549,398 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0628,306,487 - 28,349,314 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl628,304,024 - 28,349,323 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1628,109,441 - 28,152,348 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0627,999,465 - 28,042,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0628,404,915 - 28,447,832 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nde1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344115,096,073 - 115,138,607 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365013,193,916 - 3,221,700 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365013,193,962 - 3,234,640 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,125,936 - 7,180,623 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.137,145,094 - 7,174,691 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NDE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,670,559 - 14,720,025 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl514,684,215 - 14,722,192 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606815,318,463 - 15,370,071 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nde1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624782236,735 - 268,516 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624782236,715 - 284,200 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nde1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v198,038,031 - 8,077,922 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nde1
386 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:32
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000000029
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1015893911Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
RH131713  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210840,016 - 840,223 (+)MAPPERmRatBN7.2
Rnor_6.010860,742 - 860,948NCBIRnor6.0
Rnor_5.01011,539,964 - 11,540,170UniSTSRnor5.0
RGSC_v3.410778,098 - 778,304UniSTSRGSC3.4
Celera1011,429,636 - 11,429,842UniSTS
Cytogenetic Map10q11UniSTS
AU049328  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210876,517 - 876,816 (+)MAPPERmRatBN7.2
Rnor_6.010897,243 - 897,541NCBIRnor6.0
Rnor_6.01016,551 - 16,849NCBIRnor6.0
Rnor_5.01011,576,564 - 11,576,862UniSTSRnor5.0
Rnor_5.01016,551 - 16,849UniSTSRnor5.0
RGSC_v3.410814,565 - 814,863UniSTSRGSC3.4
Celera1011,466,116 - 11,466,414UniSTS
Cytogenetic Map10q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000081159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1012,180 - 24,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1016,265 - 23,699 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086392   ⟹   ENSRNOP00000073786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl101,347,018 - 1,383,447 (-)Ensembl
mRatBN7.2 Ensembl10839,788 - 883,869 (-)Ensembl
Rnor_6.0 Ensembl10860,521 - 896,938 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1012,840 - 24,144 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117824   ⟹   ENSRNOP00000089660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl10839,791 - 883,824 (-)Ensembl
RefSeq Acc Id: NM_053347   ⟹   NP_445799
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,018 - 1,383,435 (-)NCBI
mRatBN7.210839,796 - 876,213 (-)NCBI
Rnor_6.010860,521 - 896,938 (-)NCBI
Rnor_5.01011,539,735 - 11,584,847 (-)NCBI
RGSC_v3.410777,877 - 814,260 (-)RGD
Celera1011,429,415 - 11,465,811 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245849   ⟹   XP_006245911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,167 (-)NCBI
mRatBN7.210842,215 - 883,946 (-)NCBI
Rnor_6.010860,513 - 904,624 (-)NCBI
Rnor_5.01011,539,735 - 11,584,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245850   ⟹   XP_006245912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,096 (-)NCBI
mRatBN7.210842,215 - 883,896 (-)NCBI
Rnor_6.010860,513 - 904,617 (-)NCBI
Rnor_5.01011,539,735 - 11,584,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245851   ⟹   XP_006245913
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,167 (-)NCBI
mRatBN7.210839,788 - 883,946 (-)NCBI
Rnor_6.010860,513 - 904,624 (-)NCBI
Rnor_5.01011,539,735 - 11,584,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063269977   ⟹   XP_063126047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,167 (-)NCBI
RefSeq Acc Id: XM_063269978   ⟹   XP_063126048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,347,010 - 1,391,085 (-)NCBI
RefSeq Acc Id: XR_005489955
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8101,349,688 - 1,391,167 (-)NCBI
mRatBN7.210842,456 - 883,946 (-)NCBI
RefSeq Acc Id: NP_445799   ⟸   NM_053347
- UniProtKB: Q642F3 (UniProtKB/Swiss-Prot),   Q9ES39 (UniProtKB/Swiss-Prot),   A6KU37 (UniProtKB/TrEMBL),   A0A8I6AC74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245913   ⟸   XM_006245851
- Peptide Label: isoform X2
- UniProtKB: Q642F3 (UniProtKB/Swiss-Prot),   Q9ES39 (UniProtKB/Swiss-Prot),   A6KU37 (UniProtKB/TrEMBL),   A0A8I6AC74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245911   ⟸   XM_006245849
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AC74 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245912   ⟸   XM_006245850
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AC74 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073786   ⟸   ENSRNOT00000086392
Ensembl Acc Id: ENSRNOP00000089660   ⟸   ENSRNOT00000117824
RefSeq Acc Id: XP_063126047   ⟸   XM_063269977
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AC74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126048   ⟸   XM_063269978
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AC74 (UniProtKB/TrEMBL)
Protein Domains
NUDE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9ES39-F1-model_v2 AlphaFold Q9ES39 1-344 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620038 AgrOrtholog
BioCyc Gene G2FUF-26257 BioCyc
Ensembl Genes ENSRNOG00000057054 Ensembl
  ENSRNOG00000058007 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000086392 ENTREZGENE
Gene3D-CATH 6.10.250.1080 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7190483 IMAGE-MGC_LOAD
InterPro NUDE UniProtKB/Swiss-Prot
  NUDE_dom UniProtKB/Swiss-Prot
KEGG Report rno:83836 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93309 IMAGE-MGC_LOAD
NCBI Gene 83836 ENTREZGENE
PANTHER NUCLEAR DISTRIBUTION PROTEIN NUDE HOMOLOG 1 UniProtKB/Swiss-Prot
  PTHR10921 UniProtKB/Swiss-Prot
Pfam NUDE_C UniProtKB/Swiss-Prot
PhenoGen Nde1 PhenoGen
RatGTEx ENSRNOG00000057054 RatGTEx
  ENSRNOG00000058007 RatGTEx
UniProt A0A8I6AC74 ENTREZGENE
  A0A8L2R800_RAT UniProtKB/TrEMBL
  A6KU37 ENTREZGENE, UniProtKB/TrEMBL
  A6KU38_RAT UniProtKB/TrEMBL
  NDE1_RAT UniProtKB/Swiss-Prot
  Q642F3 ENTREZGENE
  Q9ES39 ENTREZGENE
UniProt Secondary Q642F3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Nde1  nudE neurodevelopment protein 1  LOC103690118  nuclear distribution protein nudE homolog 1-like  Data merged from RGD:9398378 737654 PROVISIONAL
2014-08-25 LOC103690118  nuclear distribution protein nudE homolog 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-08-14 Nde1  nudE neurodevelopment protein 1  Nde1  nudE nuclear distribution E homolog 1 (A. nidulans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-09 Nde1  nudE nuclear distribution E homolog 1 (A. nidulans)  Nde1  nudE nuclear distribution gene E homolog 1 (A. nidulans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Nde1  nudE nuclear distribution gene E homolog 1 (A. nidulans)  Nde1  nuclear distribution gene E homolog 1 (A nidulans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Nde1  nuclear distribution gene E homolog 1 (A nidulans)  Nude  nuclear distribution gene E homolog (Aspergillus)  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_homology homologous to fungal nud gene product, NUDE, and Xenopus mitotic phosphoprotein 43 633389