Trnau1ap (tRNA selenocysteine 1 associated protein 1) - Rat Genome Database

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Gene: Trnau1ap (tRNA selenocysteine 1 associated protein 1) Rattus norvegicus
Analyze
Symbol: Trnau1ap
Name: tRNA selenocysteine 1 associated protein 1
RGD ID: 619995
Description: Enables tRNA binding activity. Predicted to be involved in selenocysteine incorporation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human TRNAU1AP (tRNA selenocysteine 1 associated protein 1); INTERACTS WITH 2,4-dinitrotoluene; 4,4'-sulfonyldiphenol; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100365522; LOC682894; Secp43; similar to tRNA selenocysteine associated protein; tRNA selenocysteine 1-associated protein 1; tRNA selenocysteine 1-associated protein 1-like; tRNA selenocysteine associated protein; tRNA selenocysteine-associated protein 1; Trspap1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85149,791,631 - 149,808,149 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5149,791,631 - 149,808,680 (-)EnsemblGRCr8
mRatBN7.25144,507,044 - 144,524,142 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5144,507,615 - 144,524,131 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5147,207,855 - 147,223,864 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05148,977,749 - 148,993,759 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05148,965,635 - 148,981,913 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05150,463,797 - 150,506,803 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,492,587 - 150,506,871 (-)Ensemblrn6Rnor6.0
Rnor_5.05154,130,938 - 154,173,989 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera5142,939,711 - 142,954,467 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA,ISO,ISS)
nucleus  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification of a protein component of a mammalian tRNA(Sec) complex implicated in the decoding of UGA as selenocysteine. Ding F and Grabowski PJ, RNA 1999 Dec;5(12):1561-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16230358   PMID:22658674   PMID:22681889   PMID:28101579  


Genomics

Comparative Map Data
Trnau1ap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85149,791,631 - 149,808,149 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5149,791,631 - 149,808,680 (-)EnsemblGRCr8
mRatBN7.25144,507,044 - 144,524,142 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5144,507,615 - 144,524,131 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5147,207,855 - 147,223,864 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05148,977,749 - 148,993,759 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05148,965,635 - 148,981,913 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05150,463,797 - 150,506,803 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5150,492,587 - 150,506,871 (-)Ensemblrn6Rnor6.0
Rnor_5.05154,130,938 - 154,173,989 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera5142,939,711 - 142,954,467 (-)NCBICelera
Cytogenetic Map5q36NCBI
TRNAU1AP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38128,553,085 - 28,578,545 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl128,553,001 - 28,578,545 (+)Ensemblhg38GRCh38
GRCh37128,879,597 - 28,905,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,752,116 - 28,777,644 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34128,700,220 - 28,725,666NCBI
Celera127,275,295 - 27,300,823 (+)NCBICelera
Cytogenetic Map1p35.3NCBI
HuRef127,133,272 - 27,158,496 (+)NCBIHuRef
CHM1_1128,995,106 - 29,020,659 (+)NCBICHM1_1
T2T-CHM13v2.0128,395,040 - 28,420,501 (+)NCBIT2T-CHM13v2.0
Trnau1ap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,039,074 - 132,058,007 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,039,074 - 132,056,849 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm384132,311,763 - 132,330,696 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4132,311,763 - 132,329,538 (-)Ensemblmm10GRCm38
MGSCv374131,867,678 - 131,885,453 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364131,583,839 - 131,601,577 (-)NCBIMGSCv36mm8
Celera4130,472,783 - 130,490,458 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map465.16NCBI
Trnau1ap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554527,645,715 - 7,663,165 (+)Ensembl
ChiLan1.0NW_0049554527,645,715 - 7,663,165 (+)NCBIChiLan1.0ChiLan1.0
TRNAU1AP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21198,266,050 - 198,293,359 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11197,385,219 - 197,412,546 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0127,820,419 - 27,847,729 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1128,854,760 - 28,881,721 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,854,760 - 28,881,721 (+)EnsemblpanPan2panpan1.1
TRNAU1AP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,918,264 - 71,944,142 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,918,864 - 71,944,104 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha268,494,807 - 68,520,597 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0272,477,246 - 72,503,042 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl272,476,973 - 72,503,017 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,305,837 - 69,331,321 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0270,313,578 - 70,339,385 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0271,311,353 - 71,337,208 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Trnau1ap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505846,830,435 - 46,852,008 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647412,655,123 - 12,681,036 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647412,655,228 - 12,676,790 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRNAU1AP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl685,567,462 - 85,592,647 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1685,567,430 - 85,592,649 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2679,381,689 - 79,406,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRNAU1AP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120104,214,694 - 104,239,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20104,210,936 - 104,239,606 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603312,262,756 - 12,292,467 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trnau1ap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476412,365,015 - 12,384,183 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476412,364,994 - 12,384,767 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Trnau1ap
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1125,922,626 - 25,938,213 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Trnau1ap
157 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5149642129171146538Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134369218156289444Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5149805999162987697Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138002522170842766Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5149661912166600247Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat

Markers in Region
RH128062  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,487,461 - 144,487,668 (+)MAPPERmRatBN7.2
Rnor_6.05150,473,684 - 150,473,890NCBIRnor6.0
Rnor_5.05154,141,127 - 154,141,333UniSTSRnor5.0
Celera5142,920,008 - 142,920,214UniSTS
RH 3.4 Map5965.1UniSTS
RH133584  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25144,490,076 - 144,490,257 (+)MAPPERmRatBN7.2
Rnor_6.05150,476,299 - 150,476,479NCBIRnor6.0
Rnor_5.05154,143,742 - 154,143,922UniSTSRnor5.0
Celera5142,922,623 - 142,922,803UniSTS
RH 3.4 Map5965.0UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001411667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF181856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000086131   ⟹   ENSRNOP00000070906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5149,791,720 - 149,808,120 (-)Ensembl
mRatBN7.2 Ensembl5144,507,702 - 144,524,108 (-)Ensembl
Rnor_6.0 Ensembl5150,492,587 - 150,506,871 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098219   ⟹   ENSRNOP00000085714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5149,791,631 - 149,808,120 (-)Ensembl
mRatBN7.2 Ensembl5144,507,615 - 144,524,041 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102379   ⟹   ENSRNOP00000088939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5149,791,631 - 149,808,120 (-)Ensembl
mRatBN7.2 Ensembl5144,507,616 - 144,524,131 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113510   ⟹   ENSRNOP00000084120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5149,791,631 - 149,808,120 (-)Ensembl
mRatBN7.2 Ensembl5144,507,615 - 144,524,108 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000123742   ⟹   ENSRNOP00000098692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5149,791,631 - 149,808,680 (-)Ensembl
RefSeq Acc Id: NM_001411667   ⟹   NP_001398596
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
RefSeq Acc Id: NM_001411668   ⟹   NP_001398597
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
RefSeq Acc Id: NM_001411669   ⟹   NP_001398598
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
RefSeq Acc Id: NM_001411670   ⟹   NP_001398599
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
RefSeq Acc Id: NM_001411671   ⟹   NP_001398600
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
RefSeq Acc Id: NM_001411672   ⟹   NP_001398601
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
RefSeq Acc Id: NM_001411673   ⟹   NP_001398602
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
RefSeq Acc Id: NM_001411674   ⟹   NP_001398603
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
RefSeq Acc Id: NM_023027   ⟹   NP_075416
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,120 (-)NCBI
mRatBN7.25144,507,613 - 144,524,108 (-)NCBI
Rnor_6.05150,463,797 - 150,506,803 (-)NCBI
Rnor_5.05154,130,938 - 154,173,989 (-)NCBI
Celera5142,939,711 - 142,954,467 (-)RGD
Sequence:
RefSeq Acc Id: XM_039110734   ⟹   XP_038966662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,146 (-)NCBI
mRatBN7.25144,507,044 - 144,524,140 (-)NCBI
RefSeq Acc Id: XM_039110736   ⟹   XP_038966664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,145 (-)NCBI
mRatBN7.25144,507,613 - 144,524,139 (-)NCBI
RefSeq Acc Id: XM_039110739   ⟹   XP_038966667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,808,146 (-)NCBI
mRatBN7.25144,507,613 - 144,524,140 (-)NCBI
RefSeq Acc Id: XM_063288370   ⟹   XP_063144440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,791,631 - 149,806,576 (-)NCBI
RefSeq Acc Id: XR_005504536
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85149,793,924 - 149,808,149 (-)NCBI
mRatBN7.25144,509,906 - 144,524,142 (-)NCBI
RefSeq Acc Id: NP_075416   ⟸   NM_023027
- Peptide Label: isoform 1
- UniProtKB: Q9QZI7 (UniProtKB/Swiss-Prot),   A0A0G2JZ46 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070906   ⟸   ENSRNOT00000086131
RefSeq Acc Id: XP_038966662   ⟸   XM_039110734
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966667   ⟸   XM_039110739
- Peptide Label: isoform X3
- UniProtKB: A6ISS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966664   ⟸   XM_039110736
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JZ46 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085714   ⟸   ENSRNOT00000098219
Ensembl Acc Id: ENSRNOP00000084120   ⟸   ENSRNOT00000113510
Ensembl Acc Id: ENSRNOP00000088939   ⟸   ENSRNOT00000102379
RefSeq Acc Id: NP_001398603   ⟸   NM_001411674
- Peptide Label: isoform 9
RefSeq Acc Id: NP_001398602   ⟸   NM_001411673
- Peptide Label: isoform 8
RefSeq Acc Id: NP_001398601   ⟸   NM_001411672
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001398600   ⟸   NM_001411671
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001398599   ⟸   NM_001411670
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001398597   ⟸   NM_001411668
- Peptide Label: isoform 3
- UniProtKB: A0A0G2JZ46 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398596   ⟸   NM_001411667
- Peptide Label: isoform 2
- UniProtKB: A0A8I6A7J2 (UniProtKB/TrEMBL),   A0A0G2JZ46 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398598   ⟸   NM_001411669
- Peptide Label: isoform 4
RefSeq Acc Id: XP_063144440   ⟸   XM_063288370
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JZ46 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000098692   ⟸   ENSRNOT00000123742
Protein Domains
RRM   tRNA selenocysteine 1-associated protein 1 C-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9QZI7-F1-model_v2 AlphaFold Q9QZI7 1-287 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694095
Promoter ID:EPDNEW_R4618
Type:initiation region
Name:Trnau1ap_1
Description:tRNA selenocysteine 1 associated protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05150,506,913 - 150,506,973EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619995 AgrOrtholog
BioCyc Gene G2FUF-39695 BioCyc
Ensembl Genes ENSRNOG00000055344 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000086131 ENTREZGENE
  ENSRNOT00000098219 ENTREZGENE
  ENSRNOT00000102379 ENTREZGENE
  ENSRNOT00000113510 ENTREZGENE
  ENSRNOT00000113510.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  SECp43_RRM2 UniProtKB/Swiss-Prot
  TSAP1 UniProtKB/Swiss-Prot
  TSAP1_C UniProtKB/Swiss-Prot
KEGG Report rno:65241 UniProtKB/Swiss-Prot
NCBI Gene 65241 ENTREZGENE
PANTHER PTHR37457 UniProtKB/Swiss-Prot
  TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1 UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
  Trnau1ap UniProtKB/Swiss-Prot
PhenoGen Trnau1ap PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000055344 RatGTEx
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt A0A0G2JZ46 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A451_RAT UniProtKB/TrEMBL
  A0A8I6A7J2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L501_RAT UniProtKB/TrEMBL
  A6ISS5 ENTREZGENE, UniProtKB/TrEMBL
  Q9QZI7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-07 Trnau1ap  tRNA selenocysteine 1 associated protein 1  Secp43  tRNA selenocysteine associated protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-04-17 Secp43  tRNA selenocysteine associated protein  LOC100365522  tRNA selenocysteine 1-associated protein 1-like  Data merged from RGD:2318860 737654 PROVISIONAL
2013-04-17 Secp43  tRNA selenocysteine associated protein  LOC682894  similar to tRNA selenocysteine associated protein  Data merged from RGD:1593955 737654 PROVISIONAL
2010-05-05 LOC100365522  tRNA selenocysteine 1-associated protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC682894  similar to tRNA selenocysteine associated protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 Secp43  tRNA selenocysteine associated protein      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Secp43  tRNA selenocysteine associated protein      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains two ribonucleoprotein-binding domains and a polar/acidic carboxy terminus 633938