Pabpn1 (poly(A) binding protein, nuclear 1) - Rat Genome Database

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Gene: Pabpn1 (poly(A) binding protein, nuclear 1) Rattus norvegicus
Analyze
Symbol: Pabpn1
Name: poly(A) binding protein, nuclear 1
RGD ID: 619928
Description: Predicted to enable RNA polymerase binding activity and poly(A) binding activity. Predicted to be involved in MAPK cascade; cellular response to lipopolysaccharide; and poly(A)+ mRNA export from nucleus. Located in nuclear inclusion body. Human ortholog(s) of this gene implicated in oculopharyngeal muscular dystrophy. Orthologous to human PABPN1 (poly(A) binding protein nuclear 1); PARTICIPATES IN 3'-end pre-mRNA processing pathway; influenza A pathway; mRNA decay pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: polyadenylate-binding protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,337,955 - 32,342,700 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,338,089 - 32,342,691 (+)EnsemblGRCr8
mRatBN7.21528,368,100 - 28,372,712 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,368,100 - 28,372,703 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1530,213,821 - 30,218,434 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,361,023 - 31,365,636 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,603,690 - 29,608,302 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,555,640 - 33,560,251 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,555,640 - 33,560,242 (+)Ensemblrn6Rnor6.0
Rnor_5.01537,442,586 - 37,447,197 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41532,994,493 - 32,999,104 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,945,909 - 27,950,520 (+)NCBICelera
RGSC_v3.11533,010,489 - 33,011,858 (+)NCBI
Cytogenetic Map15p13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3-chloropropane-1,2-diol  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
dibutyl phthalate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
methidathion  (ISO)
N-nitrosodiethylamine  (EXP)
nefazodone  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (ISO)
propiconazole  (ISO)
quinolin-8-ol  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nuclear inclusion body  (IDA,IEA,ISO)
nuclear speck  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
ribonucleoprotein complex  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Oculopharyngeal muscular dystrophy-like nuclear inclusions are present in normal magnocellular neurosecretory neurons of the hypothalamus. Berciano MT, etal., Hum Mol Genet. 2004 Apr 15;13(8):829-38. Epub 2004 Feb 19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors. Gruber AR, etal., Wiley Interdiscip Rev RNA. 2014 Mar-Apr;5(2):183-96. doi: 10.1002/wrna.1206. Epub 2013 Nov 14.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. Molecular cloning and characterization of mouse testis poly(A) binding protein II encoded by the Pabp3 gene, which transcomplements meiotic mutant sme2 of S. pombe. Okamura T, etal., Biochem Genet 2000 Feb;38(1-2):1-11.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Nuclear compartmentalization and dynamics of the poly(A)-binding protein nuclear 1 (PABPN1) inclusions in supraoptic neurons under physiological and osmotic stress conditions. Villagra NT, etal., Mol Cell Neurosci. 2008 Mar;37(3):622-33. doi: 10.1016/j.mcn.2007.12.012. Epub 2007 Dec 15.
Additional References at PubMed
PMID:17289661   PMID:19364924   PMID:22658674   PMID:22681889   PMID:22844456   PMID:25931508   PMID:27209344   PMID:35352799   PMID:35894779  


Genomics

Comparative Map Data
Pabpn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,337,955 - 32,342,700 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1532,338,089 - 32,342,691 (+)EnsemblGRCr8
mRatBN7.21528,368,100 - 28,372,712 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1528,368,100 - 28,372,703 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1530,213,821 - 30,218,434 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01531,361,023 - 31,365,636 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01529,603,690 - 29,608,302 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01533,555,640 - 33,560,251 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1533,555,640 - 33,560,242 (+)Ensemblrn6Rnor6.0
Rnor_5.01537,442,586 - 37,447,197 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41532,994,493 - 32,999,104 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1527,945,909 - 27,950,520 (+)NCBICelera
RGSC_v3.11533,010,489 - 33,011,858 (+)NCBI
Cytogenetic Map15p13NCBI
PABPN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381423,321,457 - 23,326,163 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1423,321,457 - 23,326,163 (+)Ensemblhg38GRCh38
GRCh371423,790,666 - 23,795,372 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361422,859,237 - 22,865,212 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341422,859,236 - 22,865,207NCBI
Celera143,652,115 - 3,658,087 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef143,905,822 - 3,911,819 (+)NCBIHuRef
CHM1_11423,788,067 - 23,794,066 (+)NCBICHM1_1
T2T-CHM13v2.01417,522,473 - 17,527,178 (+)NCBIT2T-CHM13v2.0
Pabpn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,131,600 - 55,136,384 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,129,957 - 55,135,626 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381454,894,143 - 54,898,927 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1454,892,500 - 54,898,169 (+)Ensemblmm10GRCm38
MGSCv371455,512,980 - 55,517,764 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361453,848,361 - 53,852,261 (+)NCBIMGSCv36mm8
Celera1452,700,709 - 52,705,495 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1427.98NCBI
Pabpn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540937,000,451 - 37,004,682 (-)Ensembl
ChiLan1.0NW_00495540937,000,423 - 37,004,823 (-)NCBIChiLan1.0ChiLan1.0
PABPN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21524,738,785 - 24,758,179 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11423,955,276 - 23,974,695 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,126,179 - 4,144,810 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11422,220,986 - 22,240,237 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1422,220,986 - 22,239,403 (+)EnsemblpanPan2panpan1.1
PABPN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.183,580,768 - 3,585,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl83,569,399 - 3,586,070 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha83,529,716 - 3,533,880 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.083,688,267 - 3,693,400 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl83,677,216 - 3,693,900 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,380,770 - 3,384,934 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.083,442,080 - 3,446,241 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.083,704,030 - 3,708,196 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101973872
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864035,329,407 - 35,348,990 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367221,039,948 - 1,047,008 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049367221,053,326 - 1,059,477 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367221,039,970 - 1,044,942 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PABPN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,751,760 - 75,756,700 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1775,752,571 - 75,756,522 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,984,360 - 80,988,312 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103231469
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12923,692,252 - 23,697,882 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2923,679,736 - 23,686,349 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
ChlSab1.1 Ensembl2923,693,549 - 23,697,023 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605922,720,735 - 22,739,677 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pabpn1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11270,094,739 - 70,098,540 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Pabpn1
13 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:147
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000021096
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152272835342072050Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)152233635152597086Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat

Markers in Region
SHGC-57254  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21528,369,834 - 28,370,971 (+)MAPPERmRatBN7.2
Rnor_6.01533,557,375 - 33,558,510NCBIRnor6.0
Rnor_5.01537,444,321 - 37,445,456UniSTSRnor5.0
RGSC_v3.41532,996,228 - 32,997,363UniSTSRGSC3.4
Celera1527,947,644 - 27,948,779UniSTS
Cytogenetic Map15p13UniSTS
MARC_26170-26171:1030649367:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81532,341,990 - 32,342,447 (+)Marker Load Pipeline
mRatBN7.21528,372,001 - 28,372,459 (+)MAPPERmRatBN7.2
Rnor_6.01533,559,541 - 33,559,998NCBIRnor6.0
Rnor_5.01537,446,487 - 37,446,944UniSTSRnor5.0
RGSC_v3.41532,998,394 - 32,998,851UniSTSRGSC3.4
Celera1527,949,810 - 27,950,267UniSTS
Cytogenetic Map15p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021096   ⟹   ENSRNOP00000021096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,338,089 - 32,342,691 (+)Ensembl
mRatBN7.2 Ensembl1528,368,100 - 28,372,703 (+)Ensembl
Rnor_6.0 Ensembl1533,555,640 - 33,560,242 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104021   ⟹   ENSRNOP00000086215
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1532,338,089 - 32,342,079 (+)Ensembl
mRatBN7.2 Ensembl1528,368,100 - 28,372,090 (+)Ensembl
RefSeq Acc Id: NM_001135008   ⟹   NP_001128480
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,338,089 - 32,342,700 (+)NCBI
mRatBN7.21528,368,100 - 28,372,712 (+)NCBI
Rnor_6.01533,555,640 - 33,560,251 (+)NCBI
Rnor_5.01537,442,586 - 37,447,197 (+)NCBI
RGSC_v3.41532,994,493 - 32,999,104 (+)RGD
Celera1527,945,909 - 27,950,520 (+)RGD
Sequence:
RefSeq Acc Id: XM_063273914   ⟹   XP_063129984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,337,955 - 32,342,182 (+)NCBI
RefSeq Acc Id: NP_001128480   ⟸   NM_001135008
- UniProtKB: G3V7Z8 (UniProtKB/TrEMBL),   A6KGX0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021096   ⟸   ENSRNOT00000021096
Ensembl Acc Id: ENSRNOP00000086215   ⟸   ENSRNOT00000104021
RefSeq Acc Id: XP_063129984   ⟸   XM_063273914
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A5F1 (UniProtKB/TrEMBL)
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V7Z8-F1-model_v2 AlphaFold G3V7Z8 1-302 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699663
Promoter ID:EPDNEW_R10185
Type:multiple initiation site
Name:Pabpn1_1
Description:poly binding protein, nuclear 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01533,555,640 - 33,555,700EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619928 AgrOrtholog
BioCyc Gene G2FUF-13768 BioCyc
Ensembl Genes ENSRNOG00000042195 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021096 ENTREZGENE
  ENSRNOT00000021096.8 UniProtKB/TrEMBL
  ENSRNOT00000104021 ENTREZGENE
  ENSRNOT00000104021.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report rno:116697 UniProtKB/TrEMBL
NCBI Gene 116697 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H UniProtKB/TrEMBL
  PTHR23236:SF16 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen Pabpn1 PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042195 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8I6A5F1 ENTREZGENE, UniProtKB/TrEMBL
  A6KGX0 ENTREZGENE, UniProtKB/TrEMBL
  A6KGX1_RAT UniProtKB/TrEMBL
  A6KGX2_RAT UniProtKB/TrEMBL
  G3V7Z8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Pabpn1  poly(A) binding protein, nuclear 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Pabpn1  poly(A) binding protein, nuclear 1      Symbol and Name status set to provisional 70820 PROVISIONAL