Nsmf (NMDA receptor synaptonuclear signaling and neuronal migration factor) - Rat Genome Database

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Gene: Nsmf (NMDA receptor synaptonuclear signaling and neuronal migration factor) Rattus norvegicus
Analyze
Symbol: Nsmf
Name: NMDA receptor synaptonuclear signaling and neuronal migration factor
RGD ID: 619819
Description: Enables calcium-dependent protein binding activity. Involved in several processes, including cellular response to electrical stimulus; postsynapse to nucleus signaling pathway; and regulation of dendrite morphogenesis. Located in several cellular components, including euchromatin; nucleus; and perikaryon. Is active in glutamatergic synapse and postsynapse. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 7 with or without anosmia and hypogonadotropic hypogonadism 9 with or without anosmia. Orthologous to human NSMF (NMDA receptor synaptonuclear signaling and neuronal migration factor); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Jac; Jacob; juxtasynaptic attractor of caldendrin on dendritic boutons protein; MGC105348; nasal embryonic LHRH factor; nasal embryonic luteinizing hormone-releasing hormone factor; Nelf
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,260,018 - 28,268,790 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,260,004 - 28,268,789 (+)EnsemblGRCr8
mRatBN7.237,861,846 - 7,870,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx310,967,020 - 10,975,923 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,553,247 - 19,562,150 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,743,097 - 17,752,000 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,262,173 - 2,270,996 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,262,253 - 2,270,995 (+)Ensemblrn6Rnor6.0
Rnor_5.032,243,484 - 2,252,244 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,201,581 - 5,210,256 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera32,691,097 - 2,699,840 (+)NCBICelera
RGSC_v3.135,201,580 - 5,210,256 (+)NCBI
Cytogenetic Map3p13NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
apical dendrite  (IDA)
cell cortex  (IEA)
cortical cytoskeleton  (IDA)
cytoplasm  (IBA,IEA,ISO,ISS)
cytoskeleton  (IEA)
dendrite  (IDA,IEA)
euchromatin  (IDA)
glutamatergic synapse  (IDA,IMP)
membrane  (IDA,IEA)
neuron projection  (IDA,IEA)
nuclear envelope  (IDA,IEA)
nuclear matrix  (IDA,IEA)
nuclear membrane  (IDA,IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IDA,IEA,ISO,ISS)
perikaryon  (IDA)
plasma membrane  (IEA)
postsynapse  (IDA)
postsynaptic density  (IDA,IEA)
synapse  (IDA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Nuclear translocation of jacob in hippocampal neurons after stimuli inducing long-term potentiation but not long-term depression. Behnisch T, etal., PLoS One. 2011 Feb 18;6(2):e17276. doi: 10.1371/journal.pone.0017276.
2. Caldendrin-Jacob: a protein liaison that couples NMDA receptor signalling to the nucleus. Dieterich DC, etal., PLoS Biol. 2008 Feb;6(2):e34. doi: 10.1371/journal.pbio.0060034.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Encoding and transducing the synaptic or extrasynaptic origin of NMDA receptor signals to the nucleus. Karpova A, etal., Cell. 2013 Feb 28;152(5):1119-33. doi: 10.1016/j.cell.2013.02.002.
5. Dendritic mRNA targeting of Jacob and N-methyl-d-aspartate-induced nuclear translocation after calpain-mediated proteolysis. Kindler S, etal., J Biol Chem. 2009 Sep 11;284(37):25431-40. doi: 10.1074/jbc.M109.022137. Epub 2009 Jul 16.
6. Novel gene expressed in nasal region influences outgrowth of olfactory axons and migration of luteinizing hormone-releasing hormone (LHRH) neurons. Kramer PR and Wray S, Genes Dev 2000 Jul 15;14(14):1824-34.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
9. Online Mendelian Inheritance in Man, OMIM (TM). Online Mendelian Inheritance in Man, OMIM (TM).
10. Digenic mutations account for variable phenotypes in idiopathic hypogonadotropic hypogonadism. Pitteloud N, etal., J Clin Invest. 2007 Feb;117(2):457-63. Epub 2007 Jan 18.
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:19014935   PMID:19654008   PMID:20025934   PMID:23539133   PMID:25248434   PMID:26514267   PMID:29476059   PMID:33436037  


Genomics

Comparative Map Data
Nsmf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,260,018 - 28,268,790 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl328,260,004 - 28,268,789 (+)EnsemblGRCr8
mRatBN7.237,861,846 - 7,870,615 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx310,967,020 - 10,975,923 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,553,247 - 19,562,150 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,743,097 - 17,752,000 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,262,173 - 2,270,996 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,262,253 - 2,270,995 (+)Ensemblrn6Rnor6.0
Rnor_5.032,243,484 - 2,252,244 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,201,581 - 5,210,256 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera32,691,097 - 2,699,840 (+)NCBICelera
RGSC_v3.135,201,580 - 5,210,256 (+)NCBI
Cytogenetic Map3p13NCBI
NSMF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,447,570 - 137,459,334 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,447,570 - 137,459,576 (-)Ensemblhg38GRCh38
GRCh379140,342,022 - 140,353,786 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,462,498 - 139,473,575 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349137,618,513 - 137,629,591NCBI
Celera9110,868,305 - 110,878,574 (-)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,806,039 - 109,817,921 (-)NCBIHuRef
CHM1_19140,490,446 - 140,501,310 (-)NCBICHM1_1
T2T-CHM13v2.09149,698,122 - 149,709,468 (-)NCBIT2T-CHM13v2.0
Nsmf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39224,944,370 - 24,952,893 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl224,944,367 - 24,952,893 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38225,054,361 - 25,062,881 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,054,355 - 25,062,881 (+)Ensemblmm10GRCm38
MGSCv37224,909,899 - 24,918,401 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36224,876,388 - 24,884,890 (+)NCBIMGSCv36mm8
Celera224,781,465 - 24,789,967 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map216.94NCBI
Nsmf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,369,218 - 5,375,670 (-)Ensembl
ChiLan1.0NW_0049555135,368,384 - 5,376,480 (-)NCBIChiLan1.0ChiLan1.0
NSMF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2111,928,740 - 1,941,379 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan191,931,082 - 1,943,712 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,518,698 - 108,531,316 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,482,420 - 137,495,951 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,482,420 - 137,495,990 (-)EnsemblpanPan2panpan1.1
NSMF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,287,019 - 48,295,540 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,287,014 - 48,294,780 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha947,474,255 - 47,482,693 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0949,149,164 - 49,157,603 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,149,158 - 49,157,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1947,925,534 - 47,933,972 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,224,513 - 48,232,948 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,271,008 - 48,279,446 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nsmf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,760,312 - 202,768,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669606,299 - 615,834 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936669606,392 - 614,748 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSMF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21313,980,663 - 313,982,378 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NSMF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112734,863 - 744,214 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12735,127 - 744,659 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660584,603,362 - 4,612,920 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsmf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760574,920 - 583,410 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624760575,805 - 583,410 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Nsmf
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1512,124,239 - 12,135,558 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nsmf
57 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:897
Count of miRNA genes:199
Interacting mature miRNAs:251
Transcripts:ENSRNOT00000012129, ENSRNOT00000042100, ENSRNOT00000048137, ENSRNOT00000048353, ENSRNOT00000061303
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH132853  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.237,864,063 - 7,864,265 (+)MAPPERmRatBN7.2
Rnor_6.032,264,445 - 2,264,646NCBIRnor6.0
Rnor_5.032,245,693 - 2,245,894UniSTSRnor5.0
RGSC_v3.435,203,705 - 5,203,906UniSTSRGSC3.4
Celera32,693,289 - 2,693,490UniSTS
Cytogenetic Map3p13UniSTS
RH132502  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.237,861,242 - 7,861,452 (+)MAPPERmRatBN7.2
Rnor_6.032,261,624 - 2,261,833NCBIRnor6.0
Rnor_5.032,242,872 - 2,243,081UniSTSRnor5.0
RGSC_v3.435,200,884 - 5,201,093UniSTSRGSC3.4
Celera32,690,468 - 2,690,677UniSTS
RH 3.4 Map1845.3UniSTS
Cytogenetic Map3p13UniSTS
UniSTS:224573  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.237,870,419 - 7,870,575 (+)MAPPERmRatBN7.2
Rnor_6.032,270,801 - 2,270,956NCBIRnor6.0
Rnor_5.032,252,049 - 2,252,204UniSTSRnor5.0
RGSC_v3.435,210,061 - 5,210,216UniSTSRGSC3.4
Celera32,699,645 - 2,699,800UniSTS
Cytogenetic Map3p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 89 59 6 352 189 11 143 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_057190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063283015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ293697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ293698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ293699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ534640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ534641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ534642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000012129   ⟹   ENSRNOP00000012129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,260,053 - 28,268,789 (+)Ensembl
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,454 - 2,269,902 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000042100   ⟹   ENSRNOP00000044714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,260,047 - 28,268,789 (+)Ensembl
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,253 - 2,270,995 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000048137   ⟹   ENSRNOP00000045393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,260,004 - 28,268,788 (+)Ensembl
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,454 - 2,269,902 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000048353   ⟹   ENSRNOP00000040572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,260,004 - 28,268,788 (+)Ensembl
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,454 - 2,269,902 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000061303   ⟹   ENSRNOP00000058016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,260,004 - 28,268,788 (+)Ensembl
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Rnor_6.0 Ensembl32,262,321 - 2,270,743 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102542   ⟹   ENSRNOP00000094577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,260,004 - 28,268,788 (+)Ensembl
mRatBN7.2 Ensembl37,861,872 - 7,870,614 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109243   ⟹   ENSRNOP00000089293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,260,004 - 28,266,332 (+)Ensembl
mRatBN7.2 Ensembl37,861,872 - 7,868,361 (+)Ensembl
RefSeq Acc Id: NM_001270626   ⟹   NP_001257555
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270627   ⟹   NP_001257556
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001270628   ⟹   NP_001257557
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: NM_057190   ⟹   NP_476538
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
RGSC_v3.435,201,581 - 5,210,256 (+)RGD
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: NR_073057
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,047 - 28,268,790 (+)NCBI
mRatBN7.237,861,872 - 7,870,615 (+)NCBI
Rnor_6.032,262,253 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Celera32,691,097 - 2,699,840 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233554   ⟹   XP_006233616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,018 - 28,268,790 (+)NCBI
mRatBN7.237,861,846 - 7,870,615 (+)NCBI
Rnor_6.032,262,173 - 2,270,996 (+)NCBI
Rnor_5.032,243,484 - 2,252,244 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063283014   ⟹   XP_063139084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,020 - 28,268,790 (+)NCBI
RefSeq Acc Id: XM_063283015   ⟹   XP_063139085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,260,018 - 28,268,790 (+)NCBI
RefSeq Acc Id: NP_476538   ⟸   NM_057190
- Peptide Label: isoform 1
- UniProtKB: Q9EPI5 (UniProtKB/Swiss-Prot),   Q9EPI4 (UniProtKB/Swiss-Prot),   Q7TSC8 (UniProtKB/Swiss-Prot),   Q7TSC6 (UniProtKB/Swiss-Prot),   Q5PPF6 (UniProtKB/Swiss-Prot),   Q9EPI6 (UniProtKB/Swiss-Prot),   A0A140TAI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257555   ⟸   NM_001270626
- Peptide Label: isoform 2
- UniProtKB: D4A9M2 (UniProtKB/TrEMBL),   D3ZVR5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257556   ⟸   NM_001270627
- Peptide Label: isoform 3
- UniProtKB: D4A9M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001257557   ⟸   NM_001270628
- Peptide Label: isoform 4
- UniProtKB: D4A9M2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233616   ⟸   XM_006233554
- Peptide Label: isoform X2
- UniProtKB: Q9EPI6 (UniProtKB/Swiss-Prot),   Q9EPI5 (UniProtKB/Swiss-Prot),   Q9EPI4 (UniProtKB/Swiss-Prot),   Q7TSC8 (UniProtKB/Swiss-Prot),   Q7TSC6 (UniProtKB/Swiss-Prot),   Q5PPF6 (UniProtKB/Swiss-Prot),   F1LLY3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045393   ⟸   ENSRNOT00000048137
Ensembl Acc Id: ENSRNOP00000012129   ⟸   ENSRNOT00000012129
Ensembl Acc Id: ENSRNOP00000058016   ⟸   ENSRNOT00000061303
Ensembl Acc Id: ENSRNOP00000040572   ⟸   ENSRNOT00000048353
Ensembl Acc Id: ENSRNOP00000044714   ⟸   ENSRNOT00000042100
Ensembl Acc Id: ENSRNOP00000094577   ⟸   ENSRNOT00000102542
Ensembl Acc Id: ENSRNOP00000089293   ⟸   ENSRNOT00000109243
RefSeq Acc Id: XP_063139085   ⟸   XM_063283015
- Peptide Label: isoform X3
- UniProtKB: Q9EPI6 (UniProtKB/Swiss-Prot),   Q9EPI5 (UniProtKB/Swiss-Prot),   Q9EPI4 (UniProtKB/Swiss-Prot),   Q7TSC8 (UniProtKB/Swiss-Prot),   Q7TSC6 (UniProtKB/Swiss-Prot),   Q5PPF6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063139084   ⟸   XM_063283014
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPI6-F1-model_v2 AlphaFold Q9EPI6 1-532 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691857
Promoter ID:EPDNEW_R2381
Type:multiple initiation site
Name:Nsmf_1
Description:NMDA receptor synaptonuclear signaling and neuronal migrationfactor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.032,262,259 - 2,262,319EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619819 AgrOrtholog
BioCyc Gene G2FUF-50488 BioCyc
Ensembl Genes ENSRNOG00000008810 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012129 ENTREZGENE
  ENSRNOT00000042100 ENTREZGENE
  ENSRNOT00000048137 ENTREZGENE
  ENSRNOT00000048353 ENTREZGENE
  ENSRNOT00000061303 ENTREZGENE
Gene3D-CATH iswi atpase UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7318793 IMAGE-MGC_LOAD
InterPro NSMF UniProtKB/Swiss-Prot
KEGG Report rno:117536 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105348 IMAGE-MGC_LOAD
NCBI Gene 117536 ENTREZGENE
PANTHER PTHR32061 UniProtKB/Swiss-Prot
PhenoGen Nsmf PhenoGen
RatGTEx ENSRNOG00000008810 RatGTEx
UniProt A0A140TAI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABM3_RAT UniProtKB/TrEMBL
  A0A8I6GKU3_RAT UniProtKB/TrEMBL
  D3ZVR5 ENTREZGENE, UniProtKB/TrEMBL
  D4A9M2 ENTREZGENE, UniProtKB/TrEMBL
  D4AAJ2_RAT UniProtKB/TrEMBL
  F1LLY3 ENTREZGENE, UniProtKB/TrEMBL
  NSMF_RAT UniProtKB/Swiss-Prot
  Q5PPF6 ENTREZGENE
  Q7TSC6 ENTREZGENE
  Q7TSC8 ENTREZGENE
  Q9EPI4 ENTREZGENE
  Q9EPI5 ENTREZGENE
  Q9EPI6 ENTREZGENE
UniProt Secondary Q5PPF6 UniProtKB/Swiss-Prot
  Q7TSC6 UniProtKB/Swiss-Prot
  Q7TSC8 UniProtKB/Swiss-Prot
  Q9EPI4 UniProtKB/Swiss-Prot
  Q9EPI5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-06 Nsmf  NMDA receptor synaptonuclear signaling and neuronal migration factor  Nelf  nasal embryonic LHRH factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Nelf  nasal embryonic LHRH factor      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Nelf  nasal embryonic LHRH factor      Symbol and Name status set to provisional 70820 PROVISIONAL