Advanced Search (OLGA)

Gene: Tnr (tenascin R) Rattus norvegicus

Analyze

Symbol:

Tnr

Name:

tenascin R

RGD ID:

3886

Description:

Enables integrin binding activity. Involved in negative regulation of cell adhesion. Is active in hippocampal mossy fiber to CA3 synapse and perisynaptic extracellular matrix. Orthologous to human TNR (tenascin R); PARTICIPATES IN cell-extracellular matrix signaling pathway; INTERACTS WITH (+)-pilocarpine; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

J1NRM; janusin; neural recognition molecule J1-160/180; restrictin; tenascin R (restrictin, janusin); tenascin-R; Tenascin-R (Restrictin janusin J1-160/180); Tenascin-R (Restrictin, janusin, J1-160/180); TN-R

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TNR (tenascin R)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tnr (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tnr (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TNR (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TNR (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tnr (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TNR (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TNR (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tnr (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tnr (tenascin R)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CD244 (CD244 molecule)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TNR (tenascin R)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tnr (tenascin R)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tnr (tenascin R (restrictin, janusin))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	T15B7.1	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG30280	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG5550	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG8642	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG9500	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	tnr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tnr	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	74,507,366 - 74,701,115 (+)	Ensembl				GRCr8
mRatBN7.2	13	71,751,714 - 72,172,731 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	72,091,585 - 72,167,641 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	74,669,906 - 74,745,851 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	75,968,796 - 76,044,850 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	73,228,183 - 73,304,243 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	77,602,249 - 77,678,385 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	77,485,113 - 77,678,437 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	82,511,491 - 82,587,627 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	75,271,116 - 75,347,181 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	71,896,221 - 71,972,111 (+)	NCBI		Celera
RGSC_v3.1	13	75,285,303 - 75,361,369 (+)	NCBI
Cytogenetic Map	13	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gliosis (ISO)

NEURODEVELOPMENTAL DISORDER, NONPROGRESSIVE, WITH SPASTICITY AND TRANSIENT OPISTHOTONUS (ISO)

Parkinson's disease (ISO)

Spontaneous Abortions (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-pilocarpine (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-amino-4,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

cadmium dichloride (EXP,ISO)

chlorpyrifos (EXP)

clobetasol (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (EXP)

ethanol (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glyphosate (ISO)

ivermectin (ISO)

lead(0) (ISO)

maneb (ISO)

methapyrilene (ISO)

methimazole (EXP)

microcystin-LR (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (EXP)

ozone (ISO)

paraquat (ISO)

perfluorooctanoic acid (ISO)

potassium dichromate (ISO)

propanal (ISO)

serpentine asbestos (ISO)

silver atom (ISO)

silver(0) (ISO)

sulfadimethoxine (EXP)

tamoxifen (ISO)

toluene (EXP)

trichloroethene (EXP)

valproic acid (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

associative learning (ISO)

cell adhesion (IEA)

extracellular matrix organization (ISO)

locomotory exploration behavior (ISO)

long-term synaptic potentiation (ISO)

modulation of chemical synaptic transmission (IEA,ISO)

negative regulation of axon extension (ISO)

negative regulation of axon extension involved in regeneration (ISO)

negative regulation of cell adhesion (IDA,IEA)

negative regulation of cell-cell adhesion (ISO)

negative regulation of neuron projection development (ISO)

negative regulation of synaptic transmission (ISO)

nervous system development (IBA,TAS)

neuromuscular process controlling balance (ISO)

neuron cell-cell adhesion (ISO)

positive regulation of synaptic transmission, glutamatergic (ISO)

positive regulation of transmission of nerve impulse (ISO)

regulation of cell adhesion (IEA,ISO)

regulation of cell differentiation (IEA,ISO)

regulation of cell migration (IEA,ISO)

synapse organization (ISO)

telencephalon cell migration (ISO)

Cellular Component

cell surface (IEA,ISO)

extracellular matrix (IBA,IEA,ISO)

extracellular space (IBA)

glutamatergic synapse (IEA,ISO)

hippocampal mossy fiber to CA3 synapse (IDA)

membrane raft (IEA,ISO)

perineuronal net (IEA,ISO)

perisynaptic extracellular matrix (IDA,IEA)

Schaffer collateral - CA1 synapse (IEA,ISO)

tenascin complex (ISO)

Molecular Function

integrin binding (IPI)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cell-extracellular matrix signaling pathway (IEA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal circadian regulation of systemic arterial blood pressure (IMP)

salt-sensitive hypertension (IMP)

References

References - curated

#	Reference Title	Reference Citation
1.	Characterization of biological pathways associated with a 1.37 Mbp genomic region protective of hypertension in Dahl S rats.	Cowley AW, etal., Physiol Genomics. 2014 Jun 1;46(11):398-410. doi: 10.1152/physiolgenomics.00179.2013. Epub 2014 Apr 8.
2.	Molecular characterization and in situ mRNA localization of the neural recognition molecule J1-160/180: a modular structure similar to tenascin.	Fuss B, etal., J Cell Biol 1993 Mar;120(5):1237-49.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat tenascin-R gene: structure, chromosome location and transcriptional activity of promoter and exon 1.	Leprini A, etal., Cytogenet Cell Genet 1998;83(1-2):115-23.
5.	Beta 1 integrin-mediated effects of tenascin-R domains EGFL and FN6-8 on neural stem/progenitor cell proliferation and differentiation in vitro.	Liao H, etal., J Biol Chem. 2008 Oct 10;283(41):27927-36. Epub 2008 Jul 24.
6.	Molecular microdomains in a sensory terminal, the vestibular calyx ending.	Lysakowski A, etal., J Neurosci. 2011 Jul 6;31(27):10101-14. doi: 10.1523/JNEUROSCI.0521-11.2011.
7.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
8.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
9.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Immunoelectron microscopic localization of the neural recognition molecules L1, NCAM, and its isoform NCAM180, the NCAM-associated polysialic acid, beta1 integrin and the extracellular matrix molecule tenascin-R in synapses of the adult rat hippocampus.	Schuster T, etal., J Neurobiol. 2001 Nov 5;49(2):142-58.
13.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
14.	Tenascin-R associates extracellularly with parvalbumin immunoreactive neurones but is synthesised by another neuronal population in the adult rat cerebral cortex.	Wintergerst ES, etal., J Neurocytol 2001 Apr;30(4):293-301.
15.	Spatial and temporal regulation of tenascin-R glycosylation in the cerebellum.	Woodworth A, etal., J Biol Chem 2002 Dec 27;277(52):50941-7.

Additional References at PubMed

PMID:7530142	PMID:9081628	PMID:9294172	PMID:9405406	PMID:9507007	PMID:9861042	PMID:10341229	PMID:10723065	PMID:11077416	PMID:11161481	PMID:11377840	PMID:12056833
PMID:12882316	PMID:14529817	PMID:14681222	PMID:15033179	PMID:15034584	PMID:15120744	PMID:15296743	PMID:15615725	PMID:16262627	PMID:16831557	PMID:16870730	PMID:17537973
PMID:18364019	PMID:19141078	PMID:19459213	PMID:29476059

Genomics

Comparative Map Data

Tnr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	74,507,366 - 74,701,115 (+)	Ensembl				GRCr8
mRatBN7.2	13	71,751,714 - 72,172,731 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	72,091,585 - 72,167,641 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	74,669,906 - 74,745,851 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	75,968,796 - 76,044,850 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	73,228,183 - 73,304,243 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	77,602,249 - 77,678,385 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	77,485,113 - 77,678,437 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	82,511,491 - 82,587,627 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	75,271,116 - 75,347,181 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	71,896,221 - 71,972,111 (+)	NCBI		Celera
RGSC_v3.1	13	75,285,303 - 75,361,369 (+)	NCBI
Cytogenetic Map	13	q22	NCBI

TNR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	175,315,194 - 175,743,595 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	175,315,194 - 175,743,595 (-)	Ensembl			hg38	GRCh38
GRCh37	1	175,284,330 - 175,712,731 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	173,558,558 - 173,979,375 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	172,023,591 - 172,107,588	NCBI
Celera	1	148,402,646 - 148,823,466 (-)	NCBI		Celera
Cytogenetic Map	1	q25.1	NCBI
HuRef	1	146,518,289 - 146,939,502 (-)	NCBI		HuRef
CHM1_1	1	176,714,839 - 177,136,331 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	174,669,251 - 175,098,445 (-)	NCBI		T2T-CHM13v2.0

Tnr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	159,351,170 - 159,759,299 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	159,351,339 - 159,759,299 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	159,523,729 - 159,931,729 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	159,523,769 - 159,931,729 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	161,453,900 - 161,855,053 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	161,360,446 - 161,761,152 (+)	NCBI		MGSCv36	mm8
Celera	1	161,927,416 - 162,333,803 (+)	NCBI		Celera
Cytogenetic Map	1	H1	NCBI
cM Map	1	69.03	NCBI

Tnr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	15,088,843 - 15,282,937 (-)	Ensembl
ChiLan1.0	NW_004955406	15,007,248 - 15,512,219 (-)	NCBI	ChiLan1.0	ChiLan1.0

TNR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	73,986,128 - 74,416,537 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	73,659,533 - 74,089,881 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	150,826,892 - 151,257,301 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	154,532,462 - 154,954,416 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	154,532,582 - 154,615,538 (-)	Ensembl			panPan2	panpan1.1

TNR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	23,721,227 - 24,125,183 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	24,019,095 - 24,122,530 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	23,245,784 - 23,649,456 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	23,467,664 - 23,871,975 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	23,467,781 - 23,877,432 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	23,381,542 - 23,790,688 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	23,472,927 - 23,881,710 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	23,616,133 - 24,025,964 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tnr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	94,739,675 - 95,125,605 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	12,787,536 - 12,965,327 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	12,586,460 - 12,972,348 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	117,373,545 - 117,771,224 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	117,365,930 - 117,790,332 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	129,110,238 - 129,553,412 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TNR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	53,526,477 - 53,942,278 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666055	55,081,568 - 55,503,253 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	6,519,091 - 6,717,947 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	6,291,202 - 6,725,737 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tnr
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	38,841,420 - 39,228,742 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tnr
2667 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	873
Count of miRNA genes:	314
Interacting mature miRNAs:	394
Transcripts:	ENSRNOT00000003407
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

AW531480

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	72,116,156 - 72,116,315 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	77,626,899 - 77,627,057	NCBI	Rnor6.0
Rnor_5.0	13	82,536,141 - 82,536,299	UniSTS	Rnor5.0
RGSC_v3.4	13	75,295,687 - 75,295,845	UniSTS	RGSC3.4
Celera	13	71,920,709 - 71,920,867	UniSTS
RH 3.4 Map	13	417.7	UniSTS
Cytogenetic Map	13	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
9	9	43	157	58	56	26	50	26	6	211	117	4	137	51	85	30	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_013045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272052	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF049654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF049655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z18630	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003407 ⟹ ENSRNOP00000003407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	74,507,366 - 74,701,115 (+)	Ensembl
mRatBN7.2 Ensembl	13	72,091,585 - 72,167,641 (+)	Ensembl
Rnor_6.0 Ensembl	13	77,602,249 - 77,678,385 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076589 ⟹ ENSRNOP00000068101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	77,602,249 - 77,678,437 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	72,115,519 - 72,116,390 (+)	Ensembl
Rnor_6.0 Ensembl	13	77,626,261 - 77,627,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080254 ⟹ ENSRNOP00000071615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	77,485,113 - 77,676,362 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164277 ⟹ ENSRNOP00000111223

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	74,507,366 - 74,701,115 (+)	Ensembl

RefSeq Acc Id:

NM_013045 ⟹ NP_037177

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,625,026 - 74,701,084 (+)	NCBI
mRatBN7.2	13	72,091,585 - 72,167,641 (+)	NCBI
Rnor_6.0	13	77,602,249 - 77,678,385 (+)	NCBI
Rnor_5.0	13	82,511,491 - 82,587,627 (+)	NCBI
RGSC_v3.4	13	75,271,116 - 75,347,181 (+)	RGD
Celera	13	71,896,221 - 71,972,111 (+)	RGD

Sequence:

show sequence

AACTTCTGTCTGTATGTGTTCTAGCTTTACAGGGTGAGAGCTATAGTGGCCCAGCACAAGTTTT
CAAGATTATATGAACCCTTGTTTTCTCTTGCAGATTCCTATAACTCCATCTTGGCTACTACCAA
AAGCTCTTGAACCAAGCTCTGGCTAAGAAGATGGGGATCGAAGGGGAAACAGTAGTCTTGAAGA
ACATGCTCATTGGTGTAAACCTGATCCTGTTGGGATCCATGCTCAAGCCTTCTGAATGCCGGCT
GGAAGTGACTACAGAAAGGGTCCAGAGACAAACTGTGGAGGAGGAAGGAGGGGCTTCCAGCTAC
AACACATCCAGCAAGGAACAGCCTATGGTCTTTAACCATGTGTATAACATCAACGTGCCACTCG
AAAGCCTCTGCTCCTCGGGGCTGGAGGCCTCAGCTGAGCAGGACGTGAGTGCCGAAGATGATAC
TCTGGCAGAATACACAGGCCAAACCTCAGACCATGAAAGCCAGGTCACCTTCACCCACAAGATC
AACCTCCCCAAAAAAGCCTGCCCATGTGCAAGCTCTGCCCAGGTACTGCAGGAACTGTTGAGCC
GAATCGAGATGCTGGAGAGGGAGGTGTCAGTGCTGCGAGACCAGTGCAACACCAACTGCTGTCA
GGAAAGTGCTGCCACAGGACAACTGGACTATGTCCCTCACTGCAGCGGCCATGGCAACTTTAGC
TTCGAGTCCTGTGGCTGCATCTGCAATGAAGGCTGGTTTGGCAAGAACTGCTCAGAGCCCTACT
GCCCATTGGGCTGCTCCAGTCGGGGTGTATGTGTCGATGGCCAGTGCATTTGTGACAGTGAATA
CAGCGGAGATGACTGTTCAGAGCTCCGGTGCCCAACAGACTGCAGTTCCCGAGGGCTCTGTGTG
GATGGGGAATGTGTCTGTGAAGAGCCCTACACAGGCGAGGACTGCAGGGAGCTGCGTTGCCCTG
GGGACTGTTCAGGGAAGGGGCAATGTGCCAATGGTACCTGCCTGTGCCAAGAGGGCTATGCTGG
TGAGGACTGCAGTCAGCGACGGTGTCTGAATGCTTGCAGTGGGCGAGGTCACTGCCAGGAGGGG
CTCTGCATCTGTGAGGAGGGCTACCAGGGCCCTGACTGCTCAGCAGTTACCCCTCCAGAGGACT
TGCGAGTGGCTGGTATCAGCGACAGGTCCATTGAGCTGGAATGGGACGGGCCGATGGCAGTGAC
GGAATATGTGATCTCTTACCAGCCGAGCCTGGGGGGCCTTCAGCTCCAGCAGCGGGTGCCTGGA
GATTGGAGTGGTGTCACCATCACGGAGCTGGAGCCAGGTCTCACCTACAACATCAGCGTCTACG
CTGTCATTAGCAACATCCTCAGCCTTCCCATCACTGCCAAGGTGGCCACTCATCTTTCTACTCC
TCAAGGGCTACAGTTCAAGACGATCACAGAGACCACCGTGGAAGTGCAGTGGGAGCCCTTCTCT
TTCTCCTTCGATGGGTGGGAGATCAGCTTCACTCCAAAGAACAATGAAGGAGGGGTGATAGCTC
AGCTCCCCAGCGATGTTACGTCCTTTAACCAAACGGGACTGAAACCTGGGGAGGAGTACATTGT
GAATGTTGTAGCACTAAAGGAACAAGCCCGGGGCCCTCCGACCTCTGCCAGCGTCTCCACTGTC
ATTGACGGGCCCACACAGATCCTGGTTCGAGATGTCTCTGATACTGTGGCCTTTGTGGAATGGA
CCCCACCTCGAGCCAAAGTTGATTTCATTCTATTAAAATATGGCTTGGTGGGTGGCGAAGGTGG
GAAGACTACCTTCCGGCTGCAGCCTCCCCTTAGCCAGTACTCAGTGCAAGCCCTTAGACCTGGC
TCCCGCTACGAGGTGTCCATCAGCGCAGTCCGGGGGACCAATGAAAGTGATGCCTCAAGCACCC
AGTTTACAACAGAAATTGATGCTCCCAAGAATTTGCGAGTGGGTTCCCGGACAGCAACTAGCCT
TGACCTCGAATGGGATAACAGCGAGGCTGAAGCTCAGGAGTACAAGGTTGTGTACAGCACCCTA
GCCGGGGAGCAGTACCATGAAGTGCTGGTACCCAAAGGCATTGGTCCAACTACCAAGACTACCC
TCACAGATCTGGTTCCAGGCACAGAATATGGAGTTGGAATATCTGCGGTAATGAACTCGAAACA
AAGCATTCCCGCTACCATGAATGCCAGGACTGAGCTTGACAGTCCCCGAGACCTCATGGTAACA
GCTTCCTCAGAGACCTCTATCTCTCTCATCTGGACGAAGGCCAGTGGTCCTATTGATCACTATC
GAATTACTTTTACTCCATCTTCTGGGATCTCCTCAGAAGTCACTGTGCCTAGGGATAGGACTTC
ATATACACTGACAGATCTAGAGCCTGGAGCAGAATACATCATCTCCATTACTGCTGAGAGGGGT
CGGCAGCAGAGCCTGGAGTCTACTGTGGATGCCTTCACAGGCTTCCGCCCTATCTCCCACTTGC
ACTTTTCTCATGTGACCTCCTCCAGTGTCAACATCACCTGGAGTGACCCATCTCCCCCAGCAGA
CAGACTCATTCTGAACTACAGCCCCAGGGATGAAGAGGAGGAGATGATGGAGGTTCTCTTGGAT
GCCACCAAGAGGCACGCCGTCCTAATGGGTCTACAGCCAGCCACTGAATATATAGTGAATCTCG
TAGCTGTCCATGGGACAGTAACCTCTGAACCCATAGTGGGTTCTATCACTACAGGAATTGATCC
TCCCAAAAACATCACAATTAGCAACGTGACTAAGGACTCCCTGACAGTTTCCTGGAGCCCTCCT
GTTGCGCCTTTTGATTACTACGAGTATCCTATCGACCACCCAAGTGGACGGCTGGACAGCTCTG
TCGTGCCCAACACTGTGACAGAGTTCACAATCACCAGGCTCTATCCAGCTAGTCAATATGAAAT
AAGCCTCAACAGTGTACGCGGGAGGGAGGAGAGTGAACGCATCTGCACCCTGGTGCACACAGCC
ATGGATAGCCCCATGGATCTAATTGCTACCAACATCACGCCAACAGAAGCCCTGCTCCAGTGGA
AGGCACCCATGGGTGAAGTGGAAAATTATGTCATTGTCCTCACCCACTTTGCCATGGCTGGAGA
GACCATCCTGGTTGATGGGGTCAGTGAAGAATTCCAGCTTGTAGACCTGCTTCCTAGGACCCAC
TACACTGTCACCATGTATGCTACCAGTGGACCTCTCGTGAGTGGCACCATCGCCACCAACTTCT
CCACCCTCCTGGACCCTCCCGCCAACCTGACAGCCAGTGAAGTCACCAGGCAAAGCGCACTGAT
CTCCTGGCAGCCACCCAGAGCTGCGATTGAAAACTATGTCTTGACATACAAGTCCACCGATGGA
AGCCGCAAGGAGCTGATTGTGGATGCTGAGGACACCTGGATCCGACTGGAGGGCCTGTCGGAGA
ACACAGACTACACAGTGCTCCTGCAGGCAGCTCAGGAGGCCACAAGGAGCAGCCTCACCTCTAC
TATCTTTACCACAGGGGGCCGGGTGTTCTCTCATCCTCAAGACTGTGCCCAGCACTTGATGAAT
GGAGACACTCTGAGTGGAGTTTACACCATCTTCCTCAATGGGGAGTTAAGCCACAAGTTGCAAG
TATACTGCGATATGACCACAGATGGGGGCGGCTGGATTGTTTTCCAGAGACGGCAAAATGGCCA
AACTGATTTTTTCCGGAAATGGGCAGATTACCGTGTTGGCTTTGGGAATCTGGAGGATGAGTTT
TGGCTAGGGCTAGACAACTACCACAGGATAACAGCCCAGGGCCGCTATGAGCTGCGTGTGGATA
TGCGGGATGGACAGGAGGCCGTCTTTGCCTACTATGACAAGTTCGCTGTGGAGGACAGCAGAAG
CCTGTACAAGCTCCGTATAGGAGGCTACAATGGCACTGCAGGAGACTCCCTTAGCTATCACCAG
GGACGTCCTTTCTCCACTGAGGACAGAGACAATGATGTTGCAGTCACCAACTGTGCCATGTCAT
ACAAGGGTGCTTGGTGGTATAAGAACTGCCACCGGACCAACCTCAACGGGAAGTATGGGGAGTC
CAGGCACAGTCAGGGGATCAACTGGTACCATTGGAAAGGCCATGAATTCTCCATCCCCTTTGTA
GAAATGAAGATGAGGCCCTACATCCATCGTCTCACAGCCGGGAGGAAACGGCGAGCCTTGAAAT
TCTGAGCACTGGGCAGCCAGCCACCAGCCAAACGATCTTTTCTGTCATTTGTTTGTATTTTATA
ATATGAGACAAGGGGGGAGGGGCAACAGTAATGTGCTTCACAACATATTCAGACTATCTGAAGG
AAGCAGGAATCAGTTAGGTACCATCTGCTCCTAATTTCTGCTGCCTTGGAGCCTGACTCTCAGG
CTACAGTCCCTGCTAACCAGTCCTGCCTGATCACCCCCTCTTTTCCCACACAGGAGGAAAACTG
GGGAGTTAAAACAAAAACACCGGATGAAGTACAGATTATTATGGTGATGGGCACACACACAATT
TTCTCTGCTCCCTCTTCTGAGATACTATCCAACTTCTAAGAAATAGTAATCTGGTCACCGCTGA
CCATGACCAGGTGACCACACTATCCCAGAGAAGATTCAACAAGAAAGCTTAGCCAATCTTCTCT
TAAGAGGAAAGATACCCACCACACTCTGGCACAACAGCCCAAGGTTCACTTCAATGGGCTAAAG
ATTCTCCCATTCTGACACTTAACTTTTAGGAAGAGTGGCCTCGTTCAGCCCCCGGCCCTCCACT
AGATTCCTCCACTAGATCCTATAGACCTACCAACCCAACTATTGTTTAGAACTCCAGTTACCAA
AGCTTGTCTGATCCTGGCCCTGGATCACATAAGAGCTGTGCCCTGAGTGTCATAAGCTATTGTC
ATGGAATAACTTTCTTTGGTGGTGAGACTTGGGGAAGGGAATTGTTTCTAGCACATTTGCACCA
GGCATTGACAAAGGACAGGAGTAGAAATGAAGGCACCTACCAGGGAGTCCGTAGTCCCATTGGA
AACTGACCTTGTTTAGTGCTACTTCGTACATTTATGATCTGATTTACCATGGACTCCTTTCTCT
GATTCCTAGCTGAAGGTCTCTAGTTCTGTACCCAGCCAGGCTCTCCTCAGTGGAAGTGGCTTCA
TAAGAATCAGGGGGGAAATTTGTCTGAGCCATTCCCCTGACCTGATTACCCTGGGAAGGAGACA
GAATATTTGTCCAGGACTTTTGTTTGTTTGCTTTGATCCTGTAGTAAACAGAACTGACCCCCTC
AATGAGGTGAGATCATGAGAAACATTTTCCATCTCCCCTCTGTTATCCTGCTTTGAGAAGAAAA
ATGAAAAGTGCCAGAGGAAATTGCATTTAGAACTCCAAAGGTGAGAGGAGTGATCTCCCCGGGC
CCCCCACATGATTTGATTTTTAAGCCCTGGAGAACTGGAGGCTATAGAAGCCATGACCTTTCAG
CTTCTCCTCAAATAAAAAACAAGCCAGTCTTCCCTGCAGCAAACTCTGCCAAGCTTCTCAACTG
CCTTCTCCCCGTCTTTCTGTCCGCTCCCATCTCTGAGGACCCAGTGTGTGCTATAGGGCCTGTG
GTACCATCTAGGGTGTCTTATACCTGTGCCAACCATTTCTGAACAAGTTGGCATCTTGAAATAG
AAATAGCTACCATTTAATCAAACTTTGAGCAAGAAGCAATAGTCCTCCTGGGCTGATGATCACC
TGCTTAGCATCATGACATTGGAGTTAGCTTGCCATTTTCTGTAACCTCCCCCATTTTTGTGATG
CAGACCCAGTGACCTATTCAAGGCCAAAAACGCAGATGGAGTTTTCACTTTTTAATCCATCATG
GACTTCAAACAGCTAAGAGAGGGAGGAAGAAAGGGAAGCCTATAGGTTATATAAAATTTAACTA
GATGTAGGCCAACCATGCAGAACCAGAGGTGAGCGCTTTCAAAGGACTTGAGGGCTGTGATACA
GGGCCACCTCAGACACCATGACAGCTACAAGTCCTTGATGGATTTGTTCAAATCTCTGGGACTC
GGTTTCCTCACCTAGTTGAATTAGAGTTTAGACCAAAAGAATTTCTAATGCTCCTTTAGGTTAA
CAGTCAATAATGTTTATCTGTGATAGGAAAGCACAATCAAAGTTGGCCTTGGTGAGCCATCATA
ATTAAGGAAAAGCCAGAATCTTTGTGAAGGAGATGGGGAAAGGGAAGGAAAGGAAAGAAGGGAG
GAAAGAGACTGACTCAGAACTCTCTGTGTCTCTCATACACACACACACACACACACACACACAC
ACCCCAAAAACAATGCTAAAAGAAGCTGAAGTCATTATGTCTACAAAAGCAGAGCCAAGGACCT
GGGTGTGGCTGAACAGCCCACCTCATCAAGGGAGCCGAAATCTCGTGCCGAATTC

hide sequence

RefSeq Acc Id:

XM_039090391 ⟹ XP_038946319

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI
mRatBN7.2	13	71,751,714 - 72,172,731 (+)	NCBI

RefSeq Acc Id:

XM_039090392 ⟹ XP_038946320

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI
mRatBN7.2	13	71,751,714 - 72,172,731 (+)	NCBI

RefSeq Acc Id:

XM_039090395 ⟹ XP_038946323

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI
mRatBN7.2	13	71,751,714 - 72,172,731 (+)	NCBI

RefSeq Acc Id:

XM_063272048 ⟹ XP_063128118

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI

RefSeq Acc Id:

XM_063272049 ⟹ XP_063128119

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI

RefSeq Acc Id:

XM_063272050 ⟹ XP_063128120

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI

RefSeq Acc Id:

XM_063272051 ⟹ XP_063128121

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,285,141 - 74,706,174 (+)	NCBI

RefSeq Acc Id:

XM_063272052 ⟹ XP_063128122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,285,141 - 74,649,835 (+)	NCBI

RefSeq Acc Id:

XM_063272053 ⟹ XP_063128123

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	74,627,543 - 74,706,174 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_037177	(Get FASTA)	NCBI Sequence Viewer
	XP_038946319	(Get FASTA)	NCBI Sequence Viewer
	XP_038946320	(Get FASTA)	NCBI Sequence Viewer
	XP_038946323	(Get FASTA)	NCBI Sequence Viewer
	XP_063128118	(Get FASTA)	NCBI Sequence Viewer
	XP_063128119	(Get FASTA)	NCBI Sequence Viewer
	XP_063128120	(Get FASTA)	NCBI Sequence Viewer
	XP_063128121	(Get FASTA)	NCBI Sequence Viewer
	XP_063128122	(Get FASTA)	NCBI Sequence Viewer
	XP_063128123	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAA79229	(Get FASTA)	NCBI Sequence Viewer
	EDM09447	(Get FASTA)	NCBI Sequence Viewer
	EDM09448	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003407
	ENSRNOP00000111223
GenBank Protein	Q05546	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_037177 ⟸ NM_013045
- Peptide Label:	precursor
- UniProtKB:	Q05546 (UniProtKB/Swiss-Prot), A0A096MJE6 (UniProtKB/TrEMBL), F1LQ63 (UniProtKB/TrEMBL), A6ID49 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGIEGETVVLKNMLIGVNLILLGSMLKPSECRLEVTTERVQRQTVEEEGGASSYNTSSKEQPMV FNHVYNINVPLESLCSSGLEASAEQDVSAEDDTLAEYTGQTSDHESQVTFTHKINLPKKACPCA SSAQVLQELLSRIEMLEREVSVLRDQCNTNCCQESAATGQLDYVPHCSGHGNFSFESCGCICNE GWFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTDCSSRGLCVDGECVCEEPY TGEDCRELRCPGDCSGKGQCANGTCLCQEGYAGEDCSQRRCLNACSGRGHCQEGLCICEEGYQG PDCSAVTPPEDLRVAGISDRSIELEWDGPMAVTEYVISYQPSLGGLQLQQRVPGDWSGVTITEL EPGLTYNISVYAVISNILSLPITAKVATHLSTPQGLQFKTITETTVEVQWEPFSFSFDGWEISF TPKNNEGGVIAQLPSDVTSFNQTGLKPGEEYIVNVVALKEQARGPPTSASVSTVIDGPTQILVR DVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAV RGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLV PKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLI WTKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVD AFTGFRPISHLHFSHVTSSSVNITWSDPSPPADRLILNYSPRDEEEEMMEVLLDATKRHAVLMG LQPATEYIVNLVAVHGTVTSEPIVGSITTGIDPPKNITISNVTKDSLTVSWSPPVAPFDYYEYP IDHPSGRLDSSVVPNTVTEFTITRLYPASQYEISLNSVRGREESERICTLVHTAMDSPMDLIAT NITPTEALLQWKAPMGEVENYVIVLTHFAMAGETILVDGVSEEFQLVDLLPRTHYTVTMYATSG PLVSGTIATNFSTLLDPPANLTASEVTRQSALISWQPPRAAIENYVLTYKSTDGSRKELIVDAE DTWIRLEGLSENTDYTVLLQAAQEATRSSLTSTIFTTGGRVFSHPQDCAQHLMNGDTLSGVYTI FLNGELSHKLQVYCDMTTDGGGWIVFQRRQNGQTDFFRKWADYRVGFGNLEDEFWLGLDNYHRI TAQGRYELRVDMRDGQEAVFAYYDKFAVEDSRSLYKLRIGGYNGTAGDSLSYHQGRPFSTEDRD NDVAVTNCAMSYKGAWWYKNCHRTNLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPYIHR LTAGRKRRALKF hide sequence

Ensembl Acc Id:

ENSRNOP00000071615 ⟸ ENSRNOT00000080254

Ensembl Acc Id:

ENSRNOP00000003407 ⟸ ENSRNOT00000003407

Ensembl Acc Id:

ENSRNOP00000068101 ⟸ ENSRNOT00000076589

RefSeq Acc Id:	XP_038946320 ⟸ XM_039090392
- Peptide Label:	isoform X1
- UniProtKB:	Q05546 (UniProtKB/Swiss-Prot), A0A096MJE6 (UniProtKB/TrEMBL), F1LQ63 (UniProtKB/TrEMBL), A6ID49 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946319 ⟸ XM_039090391
- Peptide Label:	isoform X1
- UniProtKB:	Q05546 (UniProtKB/Swiss-Prot), A0A096MJE6 (UniProtKB/TrEMBL), F1LQ63 (UniProtKB/TrEMBL), A6ID49 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038946323 ⟸ XM_039090395
- Peptide Label:	isoform X3
- UniProtKB:	Q05546 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128119 ⟸ XM_063272049
- Peptide Label:	isoform X3
- UniProtKB:	Q05546 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128118 ⟸ XM_063272048
- Peptide Label:	isoform X2
- UniProtKB:	Q05546 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128120 ⟸ XM_063272050
- Peptide Label:	isoform X4
- UniProtKB:	Q05546 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128121 ⟸ XM_063272051
- Peptide Label:	isoform X5
- UniProtKB:	Q05546 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063128122 ⟸ XM_063272052
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063128123 ⟸ XM_063272053
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000111223 ⟸ ENSRNOT00000164277

Protein Domains

EGF-like Fibrinogen C-terminal Fibronectin type-III

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q05546-F1-model_v2	AlphaFold	Q05546	1-1356	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3886	AgrOrtholog
BioCyc Gene	G2FUF-17769	BioCyc
Ensembl Genes	ENSRNOG00000002468	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000003407	ENTREZGENE
	ENSRNOT00000164277	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
	3.90.215.10	UniProtKB/Swiss-Prot
	Laminin	UniProtKB/Swiss-Prot
InterPro	ECM_Regulatory_Proteins	UniProtKB/Swiss-Prot
	EGF-like_dom	UniProtKB/Swiss-Prot
	Fibrinogen-like_C	UniProtKB/Swiss-Prot
	Fibrinogen_a/b/g_C_1	UniProtKB/Swiss-Prot
	Fibrinogen_a/b/g_C_dom	UniProtKB/Swiss-Prot
	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
KEGG Report	rno:25567	UniProtKB/Swiss-Prot
NCBI Gene	25567	ENTREZGENE
PANTHER	TENASCIN	UniProtKB/Swiss-Prot
	TENASCIN-R	UniProtKB/Swiss-Prot
Pfam	EGF_TEN	UniProtKB/Swiss-Prot
	EGF_Teneurin	UniProtKB/Swiss-Prot
	Fibrinogen_C	UniProtKB/Swiss-Prot
	fn3	UniProtKB/Swiss-Prot
PhenoGen	Tnr	PhenoGen
PROSITE	EGF_1	UniProtKB/Swiss-Prot
	EGF_2	UniProtKB/Swiss-Prot
	FIBRINOGEN_C_2	UniProtKB/Swiss-Prot
	FN3	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000002468	RatGTEx
SMART	EGF	UniProtKB/Swiss-Prot
	FBG	UniProtKB/Swiss-Prot
	FN3	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49265	UniProtKB/Swiss-Prot
	SSF56496	UniProtKB/Swiss-Prot
TIGR	TC228490
UniProt	A0A096MJE6	ENTREZGENE
	A0ABK0LZH6_RAT	UniProtKB/TrEMBL
	A6ID49	ENTREZGENE, UniProtKB/TrEMBL
	A6ID50_RAT	UniProtKB/TrEMBL
	F1LQ63	ENTREZGENE, UniProtKB/TrEMBL
	Q05546	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-16	Tnr	tenascin R	Tnr	tenascin R (restrictin, janusin)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-02-02	Tnr	tenascin R (restrictin, janusin)	Tnr	tenascin R	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Tnr	Tenascin-R (Restrictin, janusin, J1-160/180)			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed exclusively in the central nervous system	634496

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Mammalian Phenotype

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Mammalian Phenotype