Syngr1 (synaptogyrin 1) - Rat Genome Database

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Gene: Syngr1 (synaptogyrin 1) Rattus norvegicus
Analyze
Symbol: Syngr1
Name: synaptogyrin 1
RGD ID: 3801
Description: Involved in regulated exocytosis and synaptic vesicle membrane organization. Acts upstream of or within protein targeting. Located in synaptic vesicle. Is active in synaptic vesicle membrane. Orthologous to human SYNGR1 (synaptogyrin 1); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: p29; synaptogyrin-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,516,246 - 113,542,918 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7113,516,265 - 113,542,917 (+)EnsemblGRCr8
mRatBN7.27111,635,911 - 111,659,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,635,918 - 111,659,341 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7113,390,379 - 113,413,774 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,613,927 - 115,637,322 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,583,281 - 115,606,676 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,311,008 - 121,334,437 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,311,024 - 121,334,437 (+)Ensemblrn6Rnor6.0
Rnor_5.07121,301,097 - 121,324,532 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47118,328,188 - 118,351,610 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7107,964,201 - 107,987,641 (+)NCBICelera
RGSC_v3.17118,362,451 - 118,385,840 (+)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrotoluene  (EXP)
2-butoxyethanol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (EXP,ISO)
flavonoids  (EXP)
folic acid  (ISO)
gamma-tocopherol  (ISO)
genistein  (ISO)
hexane  (EXP)
indole-3-methanol  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
mifepristone  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tocopherol  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. P29: a novel tyrosine-phosphorylated membrane protein present in small clear vesicles of neurons and endocrine cells. Baumert M, etal., J Cell Biol. 1990 Apr;110(4):1285-94. doi: 10.1083/jcb.110.4.1285.
2. Cellugyrin and synaptogyrin facilitate targeting of synaptophysin to a ubiquitous synaptic vesicle-sized compartment in PC12 cells. Belfort GM and Kandror KV, J Biol Chem. 2003 Nov 28;278(48):47971-8. Epub 2003 Aug 18.
3. Cellugyrin induces biogenesis of synaptic-like microvesicles in PC12 cells. Belfort GM, etal., J Biol Chem. 2005 Feb 25;280(8):7262-72. Epub 2004 Dec 7.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Structure of synaptogyrin (p29) defines novel synaptic vesicle protein. Stenius K, etal., J Cell Biol 1995 Dec;131(6 Pt 2):1801-9.
12. Synaptogyrins regulate Ca2+-dependent exocytosis in PC12 cells. Sugita S, etal., J Biol Chem. 1999 Jul 2;274(27):18893-901.
13. Molecular anatomy of a trafficking organelle. Takamori S, etal., Cell. 2006 Nov 17;127(4):831-46.
14. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
15. Composition of isolated synaptic boutons reveals the amounts of vesicle trafficking proteins. Wilhelm BG, etal., Science. 2014 May 30;344(6187):1023-8. doi: 10.1126/science.1252884.
Additional References at PubMed
PMID:10595519   PMID:20439489   PMID:22871113   PMID:23636420   PMID:29476059  


Genomics

Comparative Map Data
Syngr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,516,246 - 113,542,918 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7113,516,265 - 113,542,917 (+)EnsemblGRCr8
mRatBN7.27111,635,911 - 111,659,341 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,635,918 - 111,659,341 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7113,390,379 - 113,413,774 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,613,927 - 115,637,322 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,583,281 - 115,606,676 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,311,008 - 121,334,437 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,311,024 - 121,334,437 (+)Ensemblrn6Rnor6.0
Rnor_5.07121,301,097 - 121,324,532 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47118,328,188 - 118,351,610 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7107,964,201 - 107,987,641 (+)NCBICelera
RGSC_v3.17118,362,451 - 118,385,840 (+)NCBI
Cytogenetic Map7q34NCBI
SYNGR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,349,991 - 39,385,575 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,349,909 - 39,385,588 (+)Ensemblhg38GRCh38
GRCh372239,745,996 - 39,781,580 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,075,900 - 38,111,539 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342238,084,674 - 38,098,416NCBI
Celera2223,548,079 - 23,583,649 (+)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,711,359 - 22,746,314 (+)NCBIHuRef
CHM1_12239,704,705 - 39,740,329 (+)NCBICHM1_1
T2T-CHM13v2.02239,820,668 - 39,856,199 (+)NCBIT2T-CHM13v2.0
Syngr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,975,537 - 80,003,702 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,975,535 - 80,003,702 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381580,091,334 - 80,119,501 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,091,334 - 80,119,501 (+)Ensemblmm10GRCm38
MGSCv371579,921,764 - 79,949,931 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361579,918,589 - 79,946,756 (+)NCBIMGSCv36mm8
Celera1582,206,770 - 82,234,933 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Syngr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,244,647 - 25,269,725 (+)Ensembl
ChiLan1.0NW_00495541325,244,679 - 25,269,725 (+)NCBIChiLan1.0ChiLan1.0
SYNGR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22349,194,897 - 49,230,462 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,886,298 - 51,921,972 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,253,936 - 20,289,470 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12238,071,914 - 38,108,599 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,071,261 - 38,104,931 (+)EnsemblpanPan2panpan1.1
SYNGR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,685,079 - 25,735,940 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,687,633 - 25,713,300 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1025,620,643 - 25,648,278 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01026,436,724 - 26,464,409 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,442,572 - 26,464,419 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,151,250 - 26,178,921 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,470,448 - 26,498,089 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,646,256 - 26,673,914 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Syngr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,243,284 - 9,267,070 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,253,705 - 2,262,151 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,253,703 - 2,262,040 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNGR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,870,645 - 8,902,270 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.158,870,641 - 8,902,267 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,168,731 - 6,174,529 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNGR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,924,110 - 21,957,453 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,924,174 - 21,953,808 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045103,754,101 - 103,787,818 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syngr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,954,159 - 8,990,789 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247528,954,164 - 8,990,117 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Syngr1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11249,874,240 - 249,881,355 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Syngr1
159 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:81
Count of miRNA genes:69
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000023066
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
BM388563  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27111,656,615 - 111,656,774 (+)MAPPERmRatBN7.2
Rnor_6.07121,331,713 - 121,331,871NCBIRnor6.0
Rnor_5.07121,321,808 - 121,321,966UniSTSRnor5.0
RGSC_v3.47118,348,886 - 118,349,044UniSTSRGSC3.4
Celera7107,984,917 - 107,985,075UniSTS
RH 3.4 Map7858.5UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000023066   ⟹   ENSRNOP00000023066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl7111,635,918 - 111,659,341 (+)Ensembl
Rnor_6.0 Ensembl7121,311,046 - 121,334,437 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081377   ⟹   ENSRNOP00000072727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,311,081 - 121,331,539 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000092260   ⟹   ENSRNOP00000075756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7113,516,265 - 113,537,327 (+)Ensembl
mRatBN7.2 Ensembl7111,635,918 - 111,657,026 (+)Ensembl
Rnor_6.0 Ensembl7121,311,024 - 121,331,395 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000145685   ⟹   ENSRNOP00000110355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7113,516,281 - 113,542,917 (+)Ensembl
RefSeq Acc Id: NM_019166   ⟹   NP_062039
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,516,266 - 113,539,641 (+)NCBI
mRatBN7.27111,635,918 - 111,659,341 (+)NCBI
Rnor_6.07121,311,015 - 121,334,437 (+)NCBI
Rnor_5.07121,301,097 - 121,324,532 (+)NCBI
RGSC_v3.47118,328,188 - 118,351,610 (+)RGD
Celera7107,964,201 - 107,987,641 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241971   ⟹   XP_006242033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,516,246 - 113,542,918 (+)NCBI
mRatBN7.27111,635,911 - 111,657,030 (+)NCBI
Rnor_6.07121,311,008 - 121,332,127 (+)NCBI
Rnor_5.07121,301,097 - 121,324,532 (+)NCBI
Sequence:
RefSeq Acc Id: NP_062039   ⟸   NM_019166
- UniProtKB: Q62876 (UniProtKB/Swiss-Prot),   A6HSV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242033   ⟸   XM_006241971
- Peptide Label: isoform X1
- UniProtKB: A0A0U1RRP1 (UniProtKB/TrEMBL),   A6HSV7 (UniProtKB/TrEMBL),   A6HSV6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075756   ⟸   ENSRNOT00000092260
Ensembl Acc Id: ENSRNOP00000072727   ⟸   ENSRNOT00000081377
Ensembl Acc Id: ENSRNOP00000023066   ⟸   ENSRNOT00000023066
Ensembl Acc Id: ENSRNOP00000110355   ⟸   ENSRNOT00000145685
Protein Domains
MARVEL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62876-F1-model_v2 AlphaFold Q62876 1-234 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695500
Promoter ID:EPDNEW_R6018
Type:initiation region
Name:Syngr1_1
Description:synaptogyrin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07121,311,014 - 121,311,074EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3801 AgrOrtholog
BioCyc Gene G2FUF-32716 BioCyc
Ensembl Genes ENSRNOG00000017108 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000023066.6 UniProtKB/Swiss-Prot
  ENSRNOT00000092260 ENTREZGENE
  ENSRNOT00000145685 ENTREZGENE
InterPro Marvel UniProtKB/Swiss-Prot
  Synaptogyrin UniProtKB/Swiss-Prot
KEGG Report rno:29205 UniProtKB/Swiss-Prot
NCBI Gene 29205 ENTREZGENE
PANTHER PTHR10838 UniProtKB/Swiss-Prot
  SYNAPTOGYRIN-1 UniProtKB/Swiss-Prot
Pfam MARVEL UniProtKB/Swiss-Prot
PhenoGen Syngr1 PhenoGen
PIRSF Synaptogyrin UniProtKB/Swiss-Prot
PROSITE MARVEL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017108 RatGTEx
TIGR TC213880
UniProt A0A0U1RRP1 ENTREZGENE, UniProtKB/TrEMBL
  A6HSV5 ENTREZGENE, UniProtKB/TrEMBL
  A6HSV6 ENTREZGENE, UniProtKB/TrEMBL
  A6HSV7 ENTREZGENE, UniProtKB/TrEMBL
  Q62876 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Syngr1  synaptogyrin 1      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains has four membrane-spanning domains 70030
gene_expression uniformly expressed in the nervous system 70030