Sp4 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 6 | 145,330,416 - 145,395,750 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 6 | 145,330,416 - 145,395,146 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 6 | 139,187,458 - 139,252,741 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 6 | 139,192,147 - 139,252,126 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 6 | 142,629,275 - 142,693,969 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 6 | 139,246,735 - 139,311,441 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 6 | 139,795,393 - 139,860,091 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 6 | 146,135,877 - 146,201,344 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 6 | 146,135,877 - 146,195,819 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 6 | 155,047,728 - 155,113,698 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 6 | 145,553,512 - 145,619,389 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 6 | 136,844,006 - 136,908,926 (-) | NCBI | | Celera | | | RGSC_v3.1 | 6 | 145,559,698 - 145,620,144 (-) | NCBI | | | | | Cytogenetic Map | 6 | q33 | NCBI | | | | |
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SP4 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 7 | 21,428,083 - 21,514,822 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 7 | 21,428,043 - 21,514,822 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 7 | 21,467,701 - 21,554,440 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 7 | 21,434,214 - 21,520,687 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 7 | 21,240,928 - 21,324,574 | NCBI | | | | | Celera | 7 | 21,453,188 - 21,539,659 (+) | NCBI | | Celera | | | Cytogenetic Map | 7 | p15.3 | NCBI | | | | | HuRef | 7 | 21,352,913 - 21,439,390 (+) | NCBI | | HuRef | | | CHM1_1 | 7 | 21,468,431 - 21,554,847 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 7 | 21,564,221 - 21,650,967 (+) | NCBI | | T2T-CHM13v2.0 | | | CRA_TCAGchr7v2 | 7 | 21,519,001 - 21,605,471 (+) | NCBI | | | | |
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Sp4 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 12 | 118,195,421 - 118,265,211 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 12 | 118,198,668 - 118,265,175 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 12 | 118,231,686 - 118,301,440 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 12 | 118,234,933 - 118,301,440 (-) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 12 | 119,473,406 - 119,539,913 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 12 | 112,460,830 - 112,527,871 (-) | NCBI | | MGSCv36 | mm8 | | MGSCv36 | 12 | 118,679,035 - 118,745,471 (-) | NCBI | | MGSCv36 | mm8 | | Cytogenetic Map | 12 | F2 | NCBI | | | | | cM Map | 12 | 63.48 | NCBI | | | | |
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Sp4 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955410 | 23,955,408 - 24,015,667 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955410 | 23,955,408 - 24,015,667 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SP4 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 6 | 26,288,720 - 26,382,933 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 7 | 74,613,443 - 74,707,660 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 7 | 22,113,013 - 22,200,012 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 7 | 21,425,584 - 21,512,238 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 7 | 21,421,259 - 21,512,238 (+) | Ensembl | | | panPan2 | panpan1.1 |
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SP4 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 14 | 35,367,764 - 35,444,972 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 14 | 35,367,165 - 35,442,063 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 14 | 34,910,211 - 34,987,234 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 14 | 35,292,483 - 35,369,360 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 14 | 35,292,533 - 35,369,356 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 14 | 35,411,963 - 35,488,712 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 14 | 35,111,634 - 35,188,364 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 14 | 35,445,222 - 35,521,966 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Sp4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024405118 | 79,604,405 - 79,667,938 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936546 | 7,279,536 - 7,344,136 (+) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936546 | 7,279,531 - 7,342,999 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
SP4 (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 9 | 90,337,449 - 90,410,268 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 9 | 90,337,355 - 90,410,529 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 9 | 99,754,687 - 99,827,759 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SP4 (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 21 | 36,748,554 - 36,832,879 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 21 | 36,747,896 - 36,831,953 (-) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666042 | 67,744,520 - 67,830,449 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Sp4 (Heterocephalus glaber - naked mole-rat) |
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Sp4 (Rattus rattus - black rat) |
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