St6galnac3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3) - Rat Genome Database

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Advanced Search (OLGA)
Gene: St6galnac3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3) Rattus norvegicus
Analyze
Symbol: St6galnac3
Name: ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
RGD ID: 3677
Description: Enables sialyltransferase activity. Predicted to be involved in ceramide metabolic process; glycoprotein metabolic process; and oligosaccharide metabolic process. Predicted to be located in Golgi membrane. Orthologous to human ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3); PARTICIPATES IN ganglioside metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C; alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3; galNAc alpha-2,6-sialyltransferase III; sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C; sialyltransferase 7 ((alpha-N-acetylneuraminyl 23-betagalactosyl-13)-N-acetyl galactosaminide alpha-26-sialyltransferase) C; sialyltransferase 7c; SIAT7-C; Siat7c; ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3; ST6 GalNAc alpha-2,6-sialyltransferase 3; ST6GalNAc III; ST6GalNAcIII; STY
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82244,789,627 - 245,304,975 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2244,789,627 - 245,304,977 (-)EnsemblGRCr8
mRatBN7.22242,129,755 - 242,645,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,129,763 - 242,645,133 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2249,942,272 - 250,461,906 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02247,829,012 - 248,348,657 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02242,739,510 - 243,254,284 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02259,379,653 - 259,918,813 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2259,379,509 - 259,898,525 (-)Ensemblrn6Rnor6.0
Rnor_5.02278,043,763 - 278,583,289 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42251,284,792 - 251,701,550 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2234,066,071 - 234,594,925 (-)NCBICelera
RGSC_v3.12251,520,005 - 251,716,157 (-)NCBI
Cytogenetic Map2q45NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Molecular cloning of a developmentally regulated N-acetylgalactosamine alpha2,6-sialyltransferase specific for sialylated glycoconjugates. Sjoberg ER, etal., J Biol Chem 1996 Mar 29;271(13):7450-9.
9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
10. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:17123352  


Genomics

Comparative Map Data
St6galnac3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82244,789,627 - 245,304,975 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2244,789,627 - 245,304,977 (-)EnsemblGRCr8
mRatBN7.22242,129,755 - 242,645,120 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2242,129,763 - 242,645,133 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2249,942,272 - 250,461,906 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02247,829,012 - 248,348,657 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02242,739,510 - 243,254,284 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02259,379,653 - 259,918,813 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2259,379,509 - 259,898,525 (-)Ensemblrn6Rnor6.0
Rnor_5.02278,043,763 - 278,583,289 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42251,284,792 - 251,701,550 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2234,066,071 - 234,594,925 (-)NCBICelera
RGSC_v3.12251,520,005 - 251,716,157 (-)NCBI
Cytogenetic Map2q45NCBI
ST6GALNAC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38176,074,746 - 76,637,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl176,074,746 - 76,634,603 (+)Ensemblhg38GRCh38
GRCh37176,540,431 - 77,103,024 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36176,312,992 - 76,869,220 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34176,252,424 - 76,808,653NCBI
Celera174,780,500 - 75,336,477 (+)NCBICelera
Cytogenetic Map1p31.1NCBI
HuRef174,670,490 - 75,226,897 (+)NCBIHuRef
CHM1_1176,656,258 - 77,212,341 (+)NCBICHM1_1
T2T-CHM13v2.0175,912,700 - 76,475,062 (+)NCBIT2T-CHM13v2.0
St6galnac3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393152,903,911 - 153,430,804 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3152,903,903 - 153,430,811 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383153,198,274 - 153,725,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3153,198,266 - 153,725,174 (-)Ensemblmm10GRCm38
MGSCv373152,865,473 - 153,388,097 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363153,139,895 - 153,662,519 (-)NCBIMGSCv36mm8
Celera3159,658,440 - 160,186,623 (-)NCBICelera
Cytogenetic Map3H3NCBI
cM Map377.82NCBI
St6galnac3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542316,406,780 - 16,916,121 (-)Ensembl
ChiLan1.0NW_00495542316,405,309 - 16,916,163 (-)NCBIChiLan1.0ChiLan1.0
ST6GALNAC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21150,259,224 - 150,817,911 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,419,732 - 149,978,473 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0175,290,496 - 75,851,683 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,377,327 - 77,936,011 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,377,482 - 77,930,220 (+)EnsemblpanPan2panpan1.1
ST6GALNAC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1670,060,406 - 70,583,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl670,062,555 - 70,574,865 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha672,717,608 - 73,247,248 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0670,647,955 - 71,172,477 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl670,647,963 - 71,163,211 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1670,150,216 - 70,673,954 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0670,096,617 - 70,619,495 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0670,584,540 - 71,108,132 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
St6galnac3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505887,553,791 - 88,062,703 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365713,064,179 - 3,574,202 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365713,064,150 - 3,572,992 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST6GALNAC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6136,633,441 - 137,201,252 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16136,633,410 - 137,201,213 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26127,002,391 - 127,117,890 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST6GALNAC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12056,415,330 - 57,085,966 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603360,430,142 - 60,992,129 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St6galnac3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474220,407,410 - 20,928,766 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474220,405,342 - 20,928,792 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
St6galnac3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v137,922,478 - 8,425,505 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in St6galnac3
4913 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:309
Count of miRNA genes:191
Interacting mature miRNAs:241
Transcripts:ENSRNOT00000034316, ENSRNOT00000065262
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat

Markers in Region
D2Rat366  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82245,110,595 - 245,110,797 (+)Marker Load Pipeline
mRatBN7.22242,450,738 - 242,450,940 (+)MAPPERmRatBN7.2
Rnor_6.02259,705,194 - 259,705,395NCBIRnor6.0
Rnor_5.02278,371,515 - 278,371,716UniSTSRnor5.0
RGSC_v3.42251,604,994 - 251,605,195UniSTSRGSC3.4
RGSC_v3.42251,604,993 - 251,605,195RGDRGSC3.4
Celera2234,385,005 - 234,385,206UniSTS
RGSC_v3.12251,619,601 - 251,619,802RGD
RH 3.4 Map21639.9RGD
RH 3.4 Map21639.9UniSTS
RH 2.0 Map21209.8RGD
SHRSP x BN Map2110.2099RGD
Cytogenetic Map2q45UniSTS
RH127926  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82244,789,677 - 244,789,887 (+)Marker Load Pipeline
mRatBN7.22242,129,804 - 242,130,015 (+)MAPPERmRatBN7.2
Rnor_6.02259,379,555 - 259,379,765NCBIRnor6.0
Rnor_5.02278,043,665 - 278,043,875UniSTSRnor5.0
RGSC_v3.42251,284,694 - 251,284,904UniSTSRGSC3.4
Celera2234,065,973 - 234,066,183UniSTS
RH 3.4 Map21644.8UniSTS
Cytogenetic Map2q45UniSTS
RH132011  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,480,607 - 242,480,787 (+)MAPPERmRatBN7.2
Rnor_6.02259,734,440 - 259,734,619NCBIRnor6.0
Rnor_5.02278,400,997 - 278,401,176UniSTSRnor5.0
Celera2234,413,030 - 234,413,209UniSTS
RH 3.4 Map21629.8UniSTS
Cytogenetic Map2q45UniSTS
BE103171  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,598,692 - 242,598,845 (+)MAPPERmRatBN7.2
Rnor_6.02259,852,859 - 259,853,011NCBIRnor6.0
Rnor_5.02278,517,623 - 278,517,775UniSTSRnor5.0
RGSC_v3.42251,641,857 - 251,642,009UniSTSRGSC3.4
Celera2234,530,073 - 234,530,225UniSTS
RH 3.4 Map21629.8UniSTS
Cytogenetic Map2q45UniSTS
BF399814  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,629,800 - 242,629,992 (+)MAPPERmRatBN7.2
Rnor_6.02259,883,014 - 259,883,205NCBIRnor6.0
Rnor_5.02278,547,778 - 278,547,969UniSTSRnor5.0
RGSC_v3.42251,686,283 - 251,686,474UniSTSRGSC3.4
Celera2234,559,725 - 234,559,916UniSTS
RH 3.4 Map21630.2UniSTS
Cytogenetic Map2q45UniSTS
BF390470  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22242,519,346 - 242,519,496 (+)MAPPERmRatBN7.2
Rnor_6.02259,773,573 - 259,773,722NCBIRnor6.0
Rnor_5.02278,440,130 - 278,440,279UniSTSRnor5.0
Celera2234,451,744 - 234,451,893UniSTS
RH 3.4 Map21629.8UniSTS
Cytogenetic Map2q45UniSTS
D7S1602  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2234,327,078 - 234,328,380UniSTS
Cytogenetic Map2q45UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 67 160 91 90 59 92 59 6 355 192 11 139 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000082253   ⟹   ENSRNOP00000073209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2244,789,627 - 245,304,956 (-)Ensembl
mRatBN7.2 Ensembl2242,129,763 - 242,645,133 (-)Ensembl
Rnor_6.0 Ensembl2259,379,509 - 259,898,525 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091407   ⟹   ENSRNOP00000075041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2244,789,627 - 245,108,383 (-)Ensembl
mRatBN7.2 Ensembl2242,129,763 - 242,479,606 (-)Ensembl
Rnor_6.0 Ensembl2259,379,513 - 259,382,765 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154156   ⟹   ENSRNOP00000107517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2244,789,627 - 245,304,977 (-)Ensembl
RefSeq Acc Id: NM_019123   ⟹   NP_061996
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82244,789,627 - 245,304,945 (-)NCBI
mRatBN7.22242,129,755 - 242,645,096 (-)NCBI
Rnor_6.02259,379,653 - 259,918,813 (-)NCBI
Rnor_5.02278,043,763 - 278,583,289 (-)NCBI
RGSC_v3.42251,284,792 - 251,701,550 (-)RGD
Celera2234,066,071 - 234,594,925 (-)RGD
Sequence:
RefSeq Acc Id: XM_039102131   ⟹   XP_038958059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82244,789,631 - 245,304,963 (-)NCBI
mRatBN7.22242,129,755 - 242,645,115 (-)NCBI
RefSeq Acc Id: XM_039102132   ⟹   XP_038958060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82244,954,628 - 245,304,975 (-)NCBI
mRatBN7.22242,284,602 - 242,645,120 (-)NCBI
Protein Sequences
Protein RefSeqs NP_061996 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958059 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958060 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH72501 (Get FASTA)   NCBI Sequence Viewer  
  EDL82516 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073209
GenBank Protein Q64686 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_061996   ⟸   NM_019123
- UniProtKB: A0A096MK04 (UniProtKB/TrEMBL),   A6HWN0 (UniProtKB/TrEMBL),   Q6IN13 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073209   ⟸   ENSRNOT00000082253
Ensembl Acc Id: ENSRNOP00000075041   ⟸   ENSRNOT00000091407
RefSeq Acc Id: XP_038958059   ⟸   XM_039102131
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958060   ⟸   XM_039102132
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000107517   ⟸   ENSRNOT00000154156

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64686-F1-model_v2 AlphaFold Q64686 1-305 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691828
Promoter ID:EPDNEW_R2353
Type:single initiation site
Name:St6galnac3_1
Description:ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02259,898,539 - 259,898,599EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3677 AgrOrtholog
BioCyc Gene G2FUF-50785 BioCyc
Ensembl Genes ENSRNOG00000056894 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082253 ENTREZGENE
Gene3D-CATH 3.90.1480.20 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7099426 IMAGE-MGC_LOAD
InterPro Glyco_trans_29 UniProtKB/Swiss-Prot
  GT29-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:29758 UniProtKB/Swiss-Prot
MGC_CLONE MGC:91713 IMAGE-MGC_LOAD
NCBI Gene 29758 ENTREZGENE
PANTHER ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE 3 UniProtKB/Swiss-Prot
  PTHR45906 UniProtKB/Swiss-Prot
Pfam Glyco_transf_29 UniProtKB/Swiss-Prot
PhenoGen St6galnac3 PhenoGen
RatGTEx ENSRNOG00000056894 RatGTEx
TIGR TC207757
UniProt A0A096MK04 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LZP0_RAT UniProtKB/TrEMBL
  A6HWN0 ENTREZGENE, UniProtKB/TrEMBL
  F1M6L7_RAT UniProtKB/TrEMBL
  Q64686 ENTREZGENE
  Q6IN13 ENTREZGENE, UniProtKB/TrEMBL
  SIA7C_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-05 St6galnac3  ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3  St6galnac3  ST6 GalNAc alpha-2,6-sialyltransferase 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-27 St6galnac3  ST6 GalNAc alpha-2,6-sialyltransferase 3  St6galnac3  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 St6galnac3  ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3  Siat7c  sialyltransferase 7c  Symbol and Name updated 1299863 APPROVED
2002-06-10 Siat7c  sialyltransferase 7c      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expression is developmentally regulated in brain and constant expression is seen in spleen, kidney, and lung 69997
gene_protein 305 amino acids 69997