Psmc2 (proteasome 26S subunit, ATPase 2) - Rat Genome Database

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Pathways
Gene: Psmc2 (proteasome 26S subunit, ATPase 2) Rattus norvegicus
Analyze
Symbol: Psmc2
Name: proteasome 26S subunit, ATPase 2
RGD ID: 3428
Description: Enables TBP-class protein binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in P-body. Predicted to be part of proteasome regulatory particle, base subcomplex. Orthologous to human PSMC2 (proteasome 26S subunit, ATPase 2); PARTICIPATES IN ubiquitin/proteasome degradation pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 26S protease regulatory subunit 7; 26S proteasome AAA-ATPase subunit RPT1; 26S proteasome regulatory subunit 7; MSS1; proteasome (prosome, macropain) 26S subunit, ATPase 2; proteasome 26S subunit ATPase 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8414,148,080 - 14,162,390 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl414,148,090 - 14,162,390 (-)EnsemblGRCr8
mRatBN7.2413,255,850 - 13,270,160 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl413,255,856 - 13,270,185 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx418,401,118 - 18,415,400 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0414,215,883 - 14,230,158 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0412,586,755 - 12,601,037 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.049,867,132 - 9,881,383 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl49,867,101 - 9,881,484 (-)Ensemblrn6Rnor6.0
Rnor_5.049,868,269 - 9,882,520 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.448,704,100 - 8,718,351 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera48,847,110 - 8,861,246 (-)NCBICelera
RGSC_v3.148,704,099 - 8,718,351 (-)NCBI
Cytogenetic Map4q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dimethoxyphenol  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (ISO)
2-bromohexadecanoic acid  (ISO)
2-hydroxypropanoic acid  (ISO)
2-nitrofluorene  (EXP)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-naphthoflavone  (ISO)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
butyric acid  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP,ISO)
chromium(6+)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
doxorubicin  (ISO)
ethanol  (ISO)
finasteride  (EXP)
flavonoids  (EXP)
flutamide  (EXP)
furfural  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP,ISO)
hypochlorous acid  (ISO)
imidacloprid  (EXP)
ivermectin  (ISO)
ketoconazole  (ISO)
lead(0)  (ISO)
lovastatin  (ISO)
Mesaconitine  (EXP)
methapyrilene  (EXP)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
monocrotaline  (EXP)
monosodium L-glutamate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-nitrosodimethylamine  (EXP)
nefazodone  (EXP)
nicotine  (ISO)
nobiletin  (ISO)
Nonylphenol  (EXP)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
Propiverine  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sulfadimethoxine  (EXP)
sulindac  (EXP)
sulindac sulfide  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP,ISO)
thiabendazole  (EXP)
thiram  (ISO)
trichostatin A  (ISO)
valdecoxib  (EXP)
valproic acid  (EXP,ISO)
warfarin  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Activity-dependent dynamics and sequestration of proteasomes in dendritic spines. Bingol B and Schuman EM, Nature. 2006 Jun 29;441(7097):1144-8.
2. Participation of the 26S proteasome in the regulation of progesterone receptor concentrations in the rat brain. Camacho-Arroyo I, etal., Neuroendocrinology 2002 Nov;76(5):267-71.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Structures of the rat proteasomal ATPases: determination of highly conserved structural motifs and rules for their spacing. Makino Y, etal., Biochem Biophys Res Commun 1996 Mar 27;220(3):1049-54.
6. Multiple mammalian proteasomal ATPases, but not proteasome itself, are associated with TATA-binding protein and a novel transcriptional activator, TIP120. Makino Y, etal., Genes Cells. 1999 Sep;4(9):529-39.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. An abundance of free regulatory (19S) proteasome particles regulates neuronal synapses. Sun C, etal., Science. 2023 May 26;380(6647):eadf2018. doi: 10.1126/science.adf2018. Epub 2023 May 26.
14. Tissue and cell distribution of a mammalian proteasomal ATPase, MSS1, and its complex formation with the basal transcription factors. Yanagi S, etal., Biochem Biophys Res Commun. 2000 Dec 20;279(2):568-73.
Additional References at PubMed
PMID:9295362   PMID:9533861   PMID:9688553   PMID:16210410   PMID:16857966   PMID:17323924   PMID:18419753   PMID:19638347   PMID:19946888   PMID:21630459   PMID:22078707   PMID:22871113  
PMID:30053369   PMID:31904090   PMID:33450132  


Genomics

Comparative Map Data
Psmc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8414,148,080 - 14,162,390 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl414,148,090 - 14,162,390 (-)EnsemblGRCr8
mRatBN7.2413,255,850 - 13,270,160 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl413,255,856 - 13,270,185 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx418,401,118 - 18,415,400 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0414,215,883 - 14,230,158 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0412,586,755 - 12,601,037 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.049,867,132 - 9,881,383 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl49,867,101 - 9,881,484 (-)Ensemblrn6Rnor6.0
Rnor_5.049,868,269 - 9,882,520 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.448,704,100 - 8,718,351 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera48,847,110 - 8,861,246 (-)NCBICelera
RGSC_v3.148,704,099 - 8,718,351 (-)NCBI
Cytogenetic Map4q11NCBI
PSMC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387103,347,524 - 103,369,395 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7103,328,570 - 103,370,346 (+)Ensemblhg38GRCh38
GRCh377102,987,971 - 103,009,842 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367102,775,325 - 102,795,892 (+)NCBIBuild 36Build 36hg18NCBI36
Build 347102,582,039 - 102,602,606NCBI
Celera797,795,300 - 97,815,873 (+)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef797,350,323 - 97,372,344 (+)NCBIHuRef
CHM1_17102,920,963 - 102,943,153 (+)NCBICHM1_1
T2T-CHM13v2.07104,661,962 - 104,683,844 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27102,348,337 - 102,370,208 (+)NCBI
Psmc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39521,990,273 - 22,008,785 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl521,990,281 - 22,008,785 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38521,785,275 - 21,803,787 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl521,785,283 - 21,803,787 (+)Ensemblmm10GRCm38
MGSCv37521,291,101 - 21,309,602 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36521,297,107 - 21,315,608 (+)NCBIMGSCv36mm8
Celera518,756,208 - 18,774,395 (+)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.97NCBI
Psmc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554108,341,065 - 8,356,148 (+)Ensembl
ChiLan1.0NW_0049554108,341,218 - 8,355,515 (+)NCBIChiLan1.0ChiLan1.0
PSMC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26140,201,706 - 140,227,300 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17188,473,396 - 188,497,270 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0795,338,743 - 95,359,353 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17108,083,019 - 108,103,595 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7108,083,203 - 108,103,494 (+)EnsemblpanPan2panpan1.1
PSMC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11816,845,593 - 16,859,010 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1816,845,594 - 16,858,911 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1816,488,537 - 16,501,956 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01817,136,145 - 17,149,599 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1817,136,146 - 17,149,526 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11816,900,975 - 16,914,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01816,839,559 - 16,853,208 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01817,107,769 - 17,121,439 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Psmc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511859,026,969 - 59,043,987 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647920,148,632 - 20,168,130 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647920,150,738 - 20,167,765 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9103,362,599 - 103,376,343 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19103,362,684 - 103,376,048 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29113,971,194 - 113,984,560 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12172,323,691 - 72,341,647 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2172,323,803 - 72,341,488 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604231,660,968 - 31,679,446 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473926,001,871 - 26,016,040 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473926,001,871 - 26,015,633 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Psmc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16151,089,514 - 151,104,003 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Psmc2
78 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:53
Count of miRNA genes:49
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000016450
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4132668025Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4128392287Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4132668025Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4131106810Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4128392287Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4132668025Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4128392287Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4842855130449094Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4132668025Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
RH142410  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,255,880 - 13,256,039 (+)MAPPERmRatBN7.2
Rnor_6.049,867,162 - 9,867,320NCBIRnor6.0
Rnor_5.049,868,299 - 9,868,457UniSTSRnor5.0
RGSC_v3.448,704,130 - 8,704,288UniSTSRGSC3.4
Celera48,847,140 - 8,847,298UniSTS
Cytogenetic Map4q11UniSTS
RH142567  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,263,934 - 13,264,045 (+)MAPPERmRatBN7.2
Rnor_6.049,875,216 - 9,875,326NCBIRnor6.0
Rnor_5.049,876,353 - 9,876,463UniSTSRnor5.0
RGSC_v3.448,712,184 - 8,712,294UniSTSRGSC3.4
Celera48,855,194 - 8,855,304UniSTS
Cytogenetic Map4q11UniSTS
RH140841  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2413,255,879 - 13,256,072 (+)MAPPERmRatBN7.2
Rnor_6.049,867,161 - 9,867,353NCBIRnor6.0
Rnor_5.049,868,298 - 9,868,490UniSTSRnor5.0
RGSC_v3.448,704,129 - 8,704,321UniSTSRGSC3.4
Celera48,847,139 - 8,847,331UniSTS
RH 3.4 Map440.0UniSTS
Cytogenetic Map4q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000016450   ⟹   ENSRNOP00000016450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl414,148,090 - 14,162,390 (-)Ensembl
mRatBN7.2 Ensembl413,255,856 - 13,270,185 (-)Ensembl
Rnor_6.0 Ensembl49,867,101 - 9,881,484 (-)Ensembl
RefSeq Acc Id: NM_033236   ⟹   NP_150239
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8414,148,080 - 14,162,390 (-)NCBI
mRatBN7.2413,255,850 - 13,270,160 (-)NCBI
Rnor_6.049,867,132 - 9,881,383 (-)NCBI
Rnor_5.049,868,269 - 9,882,520 (-)NCBI
RGSC_v3.448,704,100 - 8,718,351 (-)RGD
Celera48,847,110 - 8,861,246 (-)RGD
Sequence:
RefSeq Acc Id: NP_150239   ⟸   NM_033236
- UniProtKB: Q6P7R9 (UniProtKB/Swiss-Prot),   Q63347 (UniProtKB/Swiss-Prot),   Q62690 (UniProtKB/Swiss-Prot),   G3V7L6 (UniProtKB/TrEMBL),   A6K5A1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016450   ⟸   ENSRNOT00000016450
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63347-F1-model_v2 AlphaFold Q63347 1-433 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692805
Promoter ID:EPDNEW_R3329
Type:multiple initiation site
Name:Psmc2_1
Description:proteasome 26S subunit, ATPase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.049,881,413 - 9,881,473EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3428 AgrOrtholog
BioCyc Gene G2FUF-45988 BioCyc
Ensembl Genes ENSRNOG00000012026 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000016450 ENTREZGENE
Gene3D-CATH 1.10.8.60 UniProtKB/Swiss-Prot
  2.40.50.140 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6918933 IMAGE-MGC_LOAD
InterPro 26S_Proteasome_ATPase UniProtKB/Swiss-Prot
  AAA+_ATPase UniProtKB/Swiss-Prot
  AAA_lid_3 UniProtKB/Swiss-Prot
  ATPase_AAA_core UniProtKB/Swiss-Prot
  ATPase_AAA_CS UniProtKB/Swiss-Prot
  NA-bd_OB-fold UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  PRS7-like_OB UniProtKB/Swiss-Prot
KEGG Report rno:25581 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72754 IMAGE-MGC_LOAD
NCBI Gene 25581 ENTREZGENE
PANTHER 26S PROTEASOME REGULATORY SUBUNIT UniProtKB/Swiss-Prot
Pfam AAA UniProtKB/Swiss-Prot
  AAA_lid_3 UniProtKB/Swiss-Prot
  PRS7_OB UniProtKB/Swiss-Prot
PhenoGen Psmc2 PhenoGen
PROSITE AAA UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000012026 RatGTEx
SMART AAA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A6K5A1 ENTREZGENE, UniProtKB/TrEMBL
  A6K5A2_RAT UniProtKB/TrEMBL
  A6K5A3_RAT UniProtKB/TrEMBL
  A6K5A4_RAT UniProtKB/TrEMBL
  G3V7L6 ENTREZGENE, UniProtKB/TrEMBL
  PRS7_RAT UniProtKB/Swiss-Prot
  Q62690 ENTREZGENE
  Q63347 ENTREZGENE
  Q6P7R9 ENTREZGENE
UniProt Secondary Q62690 UniProtKB/Swiss-Prot
  Q6P7R9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-19 Psmc2  proteasome 26S subunit, ATPase 2  Psmc2  proteasome (prosome, macropain) 26S subunit, ATPase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Psmc2  Proteasome (prosome, macropain) 26S subunit, ATPase      Symbol and Name status set to approved 70586 APPROVED