Bex3 (brain expressed X-linked 3) - Rat Genome Database

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Gene: Bex3 (brain expressed X-linked 3) Rattus norvegicus
Analyze
Symbol: Bex3
Name: brain expressed X-linked 3
RGD ID: 3148
Description: Enables nerve growth factor receptor binding activity. Predicted to be involved in negative regulation of protein ubiquitination and signal transduction. Predicted to act upstream of or within extrinsic apoptotic signaling pathway via death domain receptors. Located in cytoplasm. Biomarker of glaucoma and transient cerebral ischemia. Orthologous to human BEX3 (brain expressed X-linked 3); PARTICIPATES IN neurotrophic factor signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: brain-expressed X-linked protein 3 homolog; Nade; nerve growth factor receptor (TNFRSF16) associated protein 1; nerve growth factor receptor associated protein 1; nerve growth factor receptor-associated protein 1; Ngfrap1; p75NTR-associated cell death executor; rBex3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X104,064,896 - 104,066,425 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX104,064,515 - 104,075,906 (+)EnsemblGRCr8
mRatBN7.2X99,273,270 - 99,274,799 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX99,273,161 - 99,274,800 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX101,402,694 - 101,404,223 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X104,913,301 - 104,914,830 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X102,470,347 - 102,471,876 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X106,823,442 - 106,825,016 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX106,823,491 - 106,825,014 (+)Ensemblrn6Rnor6.0
Rnor_5.0X106,309,447 - 106,311,019 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X123,586,256 - 123,587,175 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX99,871,492 - 99,871,872 (-)NCBICelera
RGSC_v3.1X123,659,688 - 123,660,608 (+)NCBI
Cytogenetic MapXq32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP)
Aflatoxin B2 alpha  (ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Butylbenzyl phthalate  (ISO)
C60 fullerene  (EXP)
carbon nanotube  (ISO)
CGP 52608  (ISO)
choline  (ISO)
cisplatin  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diazinon  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dieldrin  (EXP)
dimethylarsinic acid  (EXP)
diuron  (EXP)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
graphite  (EXP)
indole-3-methanol  (EXP)
L-methionine  (ISO)
methapyrilene  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (EXP)
nickel dichloride  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
p-menthan-3-ol  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (ISO)
pirinixic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
sarin  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
Tributyltin oxide  (EXP)
triphenyl phosphate  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IDA)
cytosol  (IBA,IEA,ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Characterization of the Bex gene family in humans, mice, and rats. Alvarez E, etal., Gene. 2005 Aug 29;357(1):18-28.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Expression of the p75 neurotrophin receptor by striatal cholinergic neurons following global ischemia in rats is associated with neuronal degeneration. Greferath U, etal., Neurosci Lett 2002 Oct 25;332(1):57-60.
4. Does elevated intraocular pressure reduce retinal TRKB-mediated survival signaling in experimental glaucoma? Guo Y, etal., Exp Eye Res. 2009 Dec;89(6):921-33. doi: 10.1016/j.exer.2009.08.003. Epub 2009 Aug 14.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. NADE, a p75NTR-associated cell death executor, is involved in signal transduction mediated by the common neurotrophin receptor p75NTR. Mukai J, etal., J Biol Chem 2000 Jun 9;275(23):17566-70.
7. Co-induction of p75NTR and p75NTR-associated death executor in neurons after zinc exposure in cortical culture or transient ischemia in the rat. Park JA, etal., J Neurosci. 2000 Dec 15;20(24):9096-103.
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
12. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
13. The TSC1 gene product hamartin interacts with NADE. Yasui S, etal., Mol Cell Neurosci. 2007 May;35(1):100-8. Epub 2007 Feb 12.
14. Co-induction of p75(NTR) and the associated death executor NADE in degenerating hippocampal neurons after kainate-induced seizures in the rat. Yi JS, etal., Neurosci Lett. 2003 Aug 21;347(2):126-30.
Additional References at PubMed
PMID:11224788   PMID:15489334   PMID:19141972   PMID:24616056   PMID:25416956   PMID:25948268  


Genomics

Comparative Map Data
Bex3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X104,064,896 - 104,066,425 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX104,064,515 - 104,075,906 (+)EnsemblGRCr8
mRatBN7.2X99,273,270 - 99,274,799 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX99,273,161 - 99,274,800 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX101,402,694 - 101,404,223 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X104,913,301 - 104,914,830 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X102,470,347 - 102,471,876 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X106,823,442 - 106,825,016 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX106,823,491 - 106,825,014 (+)Ensemblrn6Rnor6.0
Rnor_5.0X106,309,447 - 106,311,019 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X123,586,256 - 123,587,175 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX99,871,492 - 99,871,872 (-)NCBICelera
RGSC_v3.1X123,659,688 - 123,660,608 (+)NCBI
Cytogenetic MapXq32NCBI
BEX3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X103,376,323 - 103,378,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX103,376,299 - 103,378,301 (+)Ensemblhg38GRCh38
GRCh37X102,631,251 - 102,633,092 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X102,517,924 - 102,519,657 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X102,438,253 - 102,439,144NCBI
CeleraX103,070,266 - 103,071,999 (+)NCBICelera
Cytogenetic MapXq22.2NCBI
HuRefX92,293,489 - 92,296,152 (+)NCBIHuRef
CHM1_1X102,524,271 - 102,526,004 (+)NCBICHM1_1
T2T-CHM13v2.0X101,823,326 - 101,825,167 (+)NCBIT2T-CHM13v2.0
Bex3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X135,171,002 - 135,172,727 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX135,171,002 - 135,172,727 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X136,270,253 - 136,271,978 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,270,253 - 136,271,978 (+)Ensemblmm10GRCm38
MGSCv37X132,804,792 - 132,806,517 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X115,643,941 - 115,644,816 (+)NCBIMGSCv36mm8
MGSCv36X131,616,707 - 131,618,330 (+)NCBIMGSCv36mm8
CeleraX119,587,173 - 119,588,875 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX57.64NCBI
Bex3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955548526,549 - 529,753 (+)Ensembl
ChiLan1.0NW_004955548526,844 - 528,406 (+)NCBIChiLan1.0ChiLan1.0
BEX3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X102,989,191 - 102,990,875 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X102,992,796 - 102,994,480 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X92,606,496 - 92,608,240 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X102,984,967 - 102,986,712 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX102,985,284 - 102,986,464 (+)EnsemblpanPan2panpan1.1
BEX3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X76,754,209 - 76,755,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX76,755,256 - 76,755,594 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX62,982,628 - 62,984,392 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X78,372,511 - 78,374,275 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1X75,849,837 - 75,851,601 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X77,541,679 - 77,543,443 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X77,303,618 - 77,305,382 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bex3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X61,521,604 - 61,522,728 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365477,841,966 - 7,843,064 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365477,842,016 - 7,843,087 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BEX3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX84,300,645 - 84,302,119 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X84,300,645 - 84,302,124 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,089,177 - 98,090,656 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BEX3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X91,280,974 - 91,282,870 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX91,281,270 - 91,282,743 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606516,139,298 - 16,141,021 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bex3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624954484,247 - 485,790 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624954484,245 - 485,860 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Bex3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X88,276,969 - 88,278,530 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bex3
3 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000045997
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X80434318125434318Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX92979612117740458Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat

Markers in Region
RH128162  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X99,274,429 - 99,274,648 (+)MAPPERmRatBN7.2
Rnor_6.0X106,824,647 - 106,824,865NCBIRnor6.0
Rnor_5.0X106,309,598 - 106,309,816UniSTSRnor5.0
RGSC_v3.4X123,586,944 - 123,587,162UniSTSRGSC3.4
CeleraX99,871,505 - 99,871,723UniSTS
RH 3.4 Map71129.52UniSTS
Cytogenetic MapXq35UniSTS
Ngfrap1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X99,274,178 - 99,274,735 (+)MAPPERmRatBN7.2
Rnor_6.0X106,824,396 - 106,824,952NCBIRnor6.0
Rnor_5.0X106,309,511 - 106,310,067UniSTSRnor5.0
RGSC_v3.4X123,586,693 - 123,587,249UniSTSRGSC3.4
Cytogenetic MapXq35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000045997   ⟹   ENSRNOP00000042696
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX104,064,797 - 104,066,576 (+)Ensembl
mRatBN7.2 EnsemblX99,273,161 - 99,274,800 (+)Ensembl
Rnor_6.0 EnsemblX106,823,491 - 106,825,014 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101625   ⟹   ENSRNOP00000077160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX99,273,309 - 99,274,799 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101693   ⟹   ENSRNOP00000082465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX104,064,515 - 104,075,906 (+)Ensembl
mRatBN7.2 EnsemblX99,273,511 - 99,274,795 (+)Ensembl
RefSeq Acc Id: NM_001398797   ⟹   NP_001385726
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X104,064,896 - 104,066,425 (+)NCBI
mRatBN7.2X99,273,270 - 99,274,799 (+)NCBI
RefSeq Acc Id: NM_053401   ⟹   NP_445853
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X104,064,896 - 104,066,425 (+)NCBI
mRatBN7.2X99,273,270 - 99,274,799 (+)NCBI
Rnor_6.0X106,823,959 - 106,824,878 (+)NCBI
Rnor_5.0X106,309,447 - 106,311,019 (-)NCBI
RGSC_v3.4X123,586,256 - 123,587,175 (+)RGD
CeleraX99,871,492 - 99,871,872 (-)RGD
Sequence:
RefSeq Acc Id: XM_039099417   ⟹   XP_038955345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X104,065,006 - 104,066,425 (+)NCBI
mRatBN7.2X99,273,394 - 99,274,799 (+)NCBI
RefSeq Acc Id: XM_039099418   ⟹   XP_038955346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X104,065,006 - 104,066,425 (+)NCBI
mRatBN7.2X99,273,392 - 99,274,799 (+)NCBI
RefSeq Acc Id: NP_445853   ⟸   NM_053401
- Peptide Label: isoform 1
- UniProtKB: B2GUV1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042696   ⟸   ENSRNOT00000045997
RefSeq Acc Id: XP_038955346   ⟸   XM_039099418
- Peptide Label: isoform X2
- UniProtKB: B2GUV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955345   ⟸   XM_039099417
- Peptide Label: isoform X1
- UniProtKB: Q9JIT2 (UniProtKB/Swiss-Prot),   Q6PDU5 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSRNOP00000077160   ⟸   ENSRNOT00000101625
Ensembl Acc Id: ENSRNOP00000082465   ⟸   ENSRNOT00000101693
RefSeq Acc Id: NP_001385726   ⟸   NM_001398797
- Peptide Label: isoform 2
- UniProtKB: Q9JIT2 (UniProtKB/Swiss-Prot),   Q6PDU5 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PDU5-F1-model_v2 AlphaFold Q6PDU5 1-130 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701944
Promoter ID:EPDNEW_R12467
Type:initiation region
Name:Bex3_1
Description:brain expressed X-linked 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X106,823,481 - 106,823,541EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3148 AgrOrtholog
BioCyc Gene G2FUF-1628 BioCyc
Ensembl Genes ENSRNOG00000028822 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000045997 ENTREZGENE
  ENSRNOT00000045997.5 UniProtKB/Swiss-Prot
  ENSRNOT00000101625.1 UniProtKB/Swiss-Prot
  ENSRNOT00000101693 ENTREZGENE
  ENSRNOT00000101693.1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887969 IMAGE-MGC_LOAD
  IMAGE:7314222 IMAGE-MGC_LOAD
InterPro BEX UniProtKB/Swiss-Prot
  TF_A-like/BEX UniProtKB/Swiss-Prot
KEGG Report rno:117089 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187350 IMAGE-MGC_LOAD
  MGC:72988 IMAGE-MGC_LOAD
NCBI Gene Bex3 ENTREZGENE
PANTHER PROTEIN BEX3 UniProtKB/Swiss-Prot
  PTHR19430 UniProtKB/Swiss-Prot
Pfam BEX UniProtKB/Swiss-Prot
PhenoGen Bex3 PhenoGen
PIRSF BEX UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000028822 RatGTEx
TIGR TC217209
UniProt B2GUV1 ENTREZGENE, UniProtKB/TrEMBL
  BEX3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9JIT2 ENTREZGENE
UniProt Secondary Q9JIT2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-19 Bex3  brain expressed X-linked 3  Ngfrap1  nerve growth factor receptor (TNFRSF16) associated protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Ngfrap1  nerve growth factor receptor (TNFRSF16) associated protein 1    nerve growth factor receptor associated protein 1  Name updated 1299863 APPROVED
2002-11-06 Ngfrap1  nerve growth factor receptor associated protein 1    nerve growth factor receptor (TNFRSF16) associated protein 1  Name updated 625702 APPROVED
2002-02-20 Ngfrap1  nerve growth factor receptor (TNFRSF16) associated protein 1      Symbol and Name updated to reflect Human and Mouse nomenclature 70282 APPROVED
2001-06-26 Bex3  brain expressed X-linked 3      Symbol and Name updated to reflect Human and Mouse nomenclature 67952 APPROVED
2001-06-26 Nade  p75NTR-associated cell death executor      Symbol and Name withdrawn 67952 WITHDRAWN