Fancc (FA complementation group C) - Rat Genome Database

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Gene: Fancc (FA complementation group C) Rattus norvegicus
Analyze
Symbol: Fancc
Name: FA complementation group C
RGD ID: 2593
Description: Predicted to be involved in cellular response to oxidative stress and nucleotide-excision repair. Predicted to act upstream of or within several processes, including brain morphogenesis; neuronal stem cell population maintenance; and removal of superoxide radicals. Located in chromatin. Human ortholog(s) of this gene implicated in several diseases, including Fanconi anemia (multiple); acute myeloid leukemia; aspirin-induced respiratory disease; pancreatic cancer; and pancytopenia. Orthologous to human FANCC (FA complementation group C); INTERACTS WITH (+)-schisandrin B; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Facc; Fanconi anemia group C; fanconi anemia group C protein homolog; Fanconi anemia, complementation group C; LOC103694020; uncharacterized LOC103694020
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8171,686,374 - 1,818,672 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl171,687,017 - 1,835,096 (+)EnsemblGRCr8
mRatBN7.2171,680,660 - 1,822,610 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl171,681,324 - 1,829,376 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,700,069 - 1,822,177 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0173,242,667 - 3,364,775 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0171,697,517 - 1,819,627 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.017826,512 - 955,703 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17833,509 - 955,615 (-)Ensemblrn6Rnor6.0
Rnor_5.017819,325 - 948,712 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4177,254,528 - 7,341,500 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera17719,268 - 841,089 (-)NCBICelera
RGSC_v3.1177,254,527 - 7,341,497 (+)NCBI
RH 3.4 Map175.6RGD
Cytogenetic Map17p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
asbestos  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP)
bisphenol F  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carmustine  (ISO)
CGP 52608  (ISO)
chlorambucil  (ISO)
cisplatin  (ISO)
cypermethrin  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
epoxiconazole  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
lipopolysaccharide  (ISO)
lycopene  (ISO)
melphalan  (ISO)
methapyrilene  (ISO)
N-ethyl-N-nitrosourea  (ISO)
ochratoxin A  (EXP)
ozone  (ISO)
paracetamol  (EXP)
pentachlorophenol  (ISO)
phosphoramide mustard  (EXP)
pirinixic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (EXP)
riddelliine  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IDA,ISO)
cytoplasm  (IEA)
cytosol  (ISO)
Fanconi anaemia nuclear complex  (IBA,IEA,ISO,ISS)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Constitutional sequence variation in the Fanconi anaemia group C (FANCC) gene in childhood acute myeloid leukaemia. Barber LM, etal., Br J Haematol. 2003 Apr;121(1):57-62.
2. Bone marrow failure in the Fanconi anemia group C mouse model after DNA damage. Carreau M, etal., Blood. 1998 Apr 15;91(8):2737-44.
3. Inactivation of Fac in mice produces inducible chromosomal instability and reduced fertility reminiscent of Fanconi anaemia. Chen M, etal., Nat Genet 1996 Apr;12(4):448-51.
4. Cloning of the bovine and rat Fanconi anemia group C cDNA. Ching Ying Wong J, etal., Mamm Genome 1997 Jul;8(7):522-5.
5. Germ line Fanconi anemia complementation group C mutations and pancreatic cancer. Couch FJ, etal., Cancer Res. 2005 Jan 15;65(2):383-6.
6. Association of complementation group and mutation type with clinical outcome in fanconi anemia. European Fanconi Anemia Research Group. Faivre L, etal., Blood. 2000 Dec 15;96(13):4064-70.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. A Leu554-to-Pro substitution completely abolishes the functional complementing activity of the Fanconi anemia (FACC) protein. Gavish H, etal., Hum Mol Genet 1993 Feb;2(2):123-6.
9. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
10. Phenotypic correction of Fanconi anemia group C knockout mice. Gush KA, etal., Blood. 2000 Jan 15;95(2):700-4.
11. Association of FANCC polymorphisms with FEV1 decline in aspirin exacerbated respiratory disease. Kim JH, etal., Mol Biol Rep. 2012 Mar;39(3):2385-94. doi: 10.1007/s11033-011-0989-6. Epub 2011 Jun 14.
12. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
13. Fanconi anemia links reactive oxygen species to insulin resistance and obesity. Li J, etal., Antioxid Redox Signal. 2012 Oct 15;17(8):1083-98. doi: 10.1089/ars.2011.4417. Epub 2012 Jun 25.
14. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
15. The Fanconi anemia core complex associates with chromatin during S phase. Mi J and Kupfer GM, Blood 2005 Jan 15;105(2):759-66. Epub 2004 Jul 15.
16. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
17. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
18. GOA pipeline RGD automated data pipeline
19. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
20. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
21. Comprehensive gene review and curation RGD comprehensive gene curation
22. Inflammatory reactive oxygen species-mediated hemopoietic suppression in Fancc-deficient mice. Sejas DP, etal., J Immunol. 2007 Apr 15;178(8):5277-87.
23. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
24. Exome sequencing identifies rare deleterious mutations in DNA repair genes FANCC and BLM as potential breast cancer susceptibility alleles. Thompson ER, etal., PLoS Genet. 2012 Sep;8(9):e1002894. doi: 10.1371/journal.pgen.1002894. Epub 2012 Sep 27.
25. In vivo therapeutic responses contingent on Fanconi anemia/BRCA2 status of the tumor. van der Heijden MS, etal., Clin Cancer Res. 2005 Oct 15;11(20):7508-15.
26. Germ cell defects and hematopoietic hypersensitivity to gamma-interferon in mice with a targeted disruption of the Fanconi anemia C gene. Whitney MA, etal., Blood 1996 Jul 1;88(1):49-58.
27. Downregulation of Fanconi anemia genes in sporadic head and neck squamous cell carcinoma. Wreesmann VB, etal., ORL J Otorhinolaryngol Relat Spec. 2007;69(4):218-25. Epub 2007 Apr 4.
28. Novel inactivating mutations of FANCC in Brazilian patients with Fanconi anemia. Yates J, etal., Hum Mutat. 2006 Feb;27(2):214.
Additional References at PubMed
PMID:9596688   PMID:11493445   PMID:12477932   PMID:20347428   PMID:22266823   PMID:24483844  


Genomics

Comparative Map Data
Fancc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8171,686,374 - 1,818,672 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl171,687,017 - 1,835,096 (+)EnsemblGRCr8
mRatBN7.2171,680,660 - 1,822,610 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl171,681,324 - 1,829,376 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,700,069 - 1,822,177 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0173,242,667 - 3,364,775 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0171,697,517 - 1,819,627 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.017826,512 - 955,703 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17833,509 - 955,615 (-)Ensemblrn6Rnor6.0
Rnor_5.017819,325 - 948,712 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4177,254,528 - 7,341,500 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera17719,268 - 841,089 (-)NCBICelera
RGSC_v3.1177,254,527 - 7,341,497 (+)NCBI
RH 3.4 Map175.6RGD
Cytogenetic Map17p14NCBI
FANCC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38995,099,054 - 95,317,709 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl995,099,054 - 95,426,796 (-)Ensemblhg38GRCh38
GRCh37997,861,336 - 98,079,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36996,901,157 - 97,119,812 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34994,940,890 - 95,159,546NCBI
Celera968,302,367 - 68,521,048 (-)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef967,470,857 - 67,689,280 (-)NCBIHuRef
CHM1_1998,007,791 - 98,226,463 (-)NCBICHM1_1
T2T-CHM13v2.09107,268,451 - 107,487,223 (-)NCBIT2T-CHM13v2.0
Fancc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391363,452,519 - 63,645,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1363,432,857 - 63,645,092 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381363,301,334 - 63,497,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1363,285,043 - 63,497,278 (-)Ensemblmm10GRCm38
MGSCv371363,406,017 - 63,533,053 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361363,320,977 - 63,440,947 (-)NCBIMGSCv36mm8
Celera1364,958,890 - 65,084,928 (-)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1332.8NCBI
Fancc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542222,032,258 - 22,247,044 (-)Ensembl
ChiLan1.0NW_00495542222,031,825 - 22,246,478 (-)NCBIChiLan1.0ChiLan1.0
FANCC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21144,131,166 - 44,349,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1944,133,582 - 44,352,031 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0966,201,581 - 66,418,229 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1994,327,355 - 94,544,772 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl994,329,971 - 94,477,198 (-)EnsemblpanPan2panpan1.1
FANCC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1171,388,931 - 71,678,019 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl171,487,601 - 71,678,506 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha172,151,677 - 72,440,952 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0171,693,614 - 71,983,350 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl171,788,781 - 71,973,067 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1171,505,368 - 71,794,755 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0171,269,071 - 71,558,824 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0171,975,513 - 72,265,108 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fancc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049444,751,995 - 4,931,679 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366263,982,647 - 4,159,976 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366263,980,311 - 4,147,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1026,796,572 - 27,061,801 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11026,796,546 - 27,055,271 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21031,282,173 - 31,315,897 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FANCC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112107,780,087 - 107,991,828 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12107,845,135 - 107,991,237 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603896,155,447 - 96,377,196 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fancc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475316,566,864 - 16,811,438 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fancc
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11476,142,976 - 76,224,721 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fancc
249 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:82
Interacting mature miRNAs:92
Transcripts:ENSRNOT00000022884
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17121499218Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat

Markers in Region
D17Got229  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2171,779,376 - 1,779,497 (-)MAPPERmRatBN7.2
Rnor_6.017857,487 - 857,607NCBIRnor6.0
Rnor_5.017850,440 - 850,560UniSTSRnor5.0
RGSC_v3.4177,317,343 - 7,317,463UniSTSRGSC3.4
Celera17743,288 - 743,408UniSTS
Cytogenetic Map17p14UniSTS
RH94652  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2171,803,299 - 1,803,455 (-)MAPPERmRatBN7.2
Rnor_6.017833,529 - 833,684NCBIRnor6.0
Rnor_5.017826,342 - 826,497UniSTSRnor5.0
RGSC_v3.4177,341,322 - 7,341,477UniSTSRGSC3.4
Celera17719,291 - 719,446UniSTS
RH 3.4 Map175.6UniSTS
Cytogenetic Map17p14UniSTS
RH141857  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2171,803,246 - 1,803,432 (-)MAPPERmRatBN7.2
Rnor_6.017833,552 - 833,737NCBIRnor6.0
Rnor_5.017826,365 - 826,550UniSTSRnor5.0
RGSC_v3.4177,341,269 - 7,341,454UniSTSRGSC3.4
Celera17719,314 - 719,499UniSTS
RH 3.4 Map1723.2UniSTS
Cytogenetic Map17p14UniSTS
Fanccrgdv551196202-C  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.017946,321 - 946,321 (-)RGDRnor6.0
Rnor_5.017939,418 - 939,418 (-)RGDRnor5.0
RGSC_v3.4177,228,496 - 7,228,496 (+)RGDRGSC3.4


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001443863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022884   ⟹   ENSRNOP00000022884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl171,687,017 - 1,809,195 (+)Ensembl
mRatBN7.2 Ensembl171,681,324 - 1,803,468 (+)Ensembl
Rnor_6.0 Ensembl17833,509 - 955,615 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094085   ⟹   ENSRNOP00000092010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl171,687,017 - 1,809,195 (+)Ensembl
mRatBN7.2 Ensembl171,681,324 - 1,803,468 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095403   ⟹   ENSRNOP00000084889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl171,687,017 - 1,835,096 (+)Ensembl
mRatBN7.2 Ensembl171,681,324 - 1,829,376 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154476   ⟹   ENSRNOP00000099801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl171,687,017 - 1,809,195 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164718   ⟹   ENSRNOP00000101125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl171,719,563 - 1,809,195 (+)Ensembl
RefSeq Acc Id: NM_012557   ⟹   NP_036689
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,687,089 - 1,809,198 (+)NCBI
mRatBN7.2171,681,361 - 1,803,478 (+)NCBI
Rnor_6.017833,506 - 955,615 (-)NCBI
Rnor_5.017819,325 - 948,712 (-)NCBI
RGSC_v3.4177,254,528 - 7,341,500 (+)RGD
Celera17719,268 - 841,089 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253489   ⟹   XP_006253551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,686,745 - 1,818,672 (+)NCBI
mRatBN7.2171,680,663 - 1,810,500 (+)NCBI
Rnor_6.017826,512 - 923,430 (-)NCBI
Rnor_5.017819,325 - 948,712 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006253491   ⟹   XP_006253553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,746,689 - 1,818,672 (+)NCBI
mRatBN7.2171,739,766 - 1,810,500 (+)NCBI
Rnor_6.017826,512 - 897,149 (-)NCBI
Rnor_5.017819,325 - 948,712 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063276049   ⟹   XP_063132119
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,720,946 - 1,818,672 (+)NCBI
RefSeq Acc Id: XM_063276050   ⟹   XP_063132120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,687,367 - 1,818,672 (+)NCBI
RefSeq Acc Id: XM_063276051   ⟹   XP_063132121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,687,366 - 1,818,672 (+)NCBI
RefSeq Acc Id: XM_063276052   ⟹   XP_063132122
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,725,162 - 1,818,672 (+)NCBI
RefSeq Acc Id: XM_063276053   ⟹   XP_063132123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,686,374 - 1,788,153 (+)NCBI
RefSeq Acc Id: NP_036689   ⟸   NM_012557
- UniProtKB: O35870 (UniProtKB/Swiss-Prot),   B4F762 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253551   ⟸   XM_006253489
- Peptide Label: isoform X2
- UniProtKB: O35870 (UniProtKB/Swiss-Prot),   B4F762 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253553   ⟸   XM_006253491
- Peptide Label: isoform X3
- UniProtKB: O35870 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022884   ⟸   ENSRNOT00000022884
Ensembl Acc Id: ENSRNOP00000084889   ⟸   ENSRNOT00000095403
Ensembl Acc Id: ENSRNOP00000092010   ⟸   ENSRNOT00000094085
RefSeq Acc Id: XP_063132123   ⟸   XM_063276053
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063132121   ⟸   XM_063276051
- Peptide Label: isoform X2
- UniProtKB: O35870 (UniProtKB/Swiss-Prot),   B4F762 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132120   ⟸   XM_063276050
- Peptide Label: isoform X2
- UniProtKB: O35870 (UniProtKB/Swiss-Prot),   B4F762 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132119   ⟸   XM_063276049
- Peptide Label: isoform X1
- UniProtKB: O35870 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063132122   ⟸   XM_063276052
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000099801   ⟸   ENSRNOT00000154476
Ensembl Acc Id: ENSRNOP00000101125   ⟸   ENSRNOT00000164718

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35870-F1-model_v2 AlphaFold O35870 1-557 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2593 AgrOrtholog
BioCyc Gene G2FUF-10527 BioCyc
Ensembl Genes ENSRNOG00000016889 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000022884 ENTREZGENE
  ENSRNOT00000164718 ENTREZGENE
InterPro FANCC UniProtKB/Swiss-Prot
NCBI Gene 24361 ENTREZGENE
PANTHER FANCONI ANEMIA GROUP C PROTEIN UniProtKB/Swiss-Prot
  PTHR16798 UniProtKB/Swiss-Prot
Pfam Fanconi_C UniProtKB/Swiss-Prot
PhenoGen Fancc PhenoGen
PIRSF FACC_protein UniProtKB/Swiss-Prot
PRINTS FANCONICGENE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016889 RatGTEx
TIGR TC235798
UniProt A0A8I6A237_RAT UniProtKB/TrEMBL
  A0A8I6AGC3_RAT UniProtKB/TrEMBL
  A0ABK0LE55_RAT UniProtKB/TrEMBL
  A0ABK0LFZ6_RAT UniProtKB/TrEMBL
  A6KQB9_RAT UniProtKB/TrEMBL
  A6KQC3_RAT UniProtKB/TrEMBL
  B4F762 ENTREZGENE, UniProtKB/TrEMBL
  F7EZC4_RAT UniProtKB/TrEMBL
  FANCC_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Fancc  FA complementation group C  LOC103694020  uncharacterized LOC103694020  Data merged from RGD:9102771 737654 PROVISIONAL
2018-05-25 Fancc  FA complementation group C  Fancc  Fanconi anemia, complementation group C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103694020  uncharacterized LOC103694020      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Fancc  Fanconi anemia group C      Symbol and Name status set to approved 70586 APPROVED