Crmp1 (collapsin response mediator protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Crmp1 (collapsin response mediator protein 1) Rattus norvegicus
Analyze
Symbol: Crmp1
Name: collapsin response mediator protein 1
RGD ID: 2407
Description: Predicted to enable several functions, including filamin binding activity; identical protein binding activity; and phosphoprotein binding activity. Involved in neuron development. Predicted to be located in several cellular components, including growth cone; midbody; and neuronal cell body. Predicted to be active in cytosol; postsynapse; and presynapse. Orthologous to human CRMP1 (collapsin response mediator protein 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CRMP-1; dihydropyrimidinase-related protein 1; DRP-1; inactive dihydropyrimidinase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81477,734,675 - 77,780,916 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1477,734,675 - 77,780,916 (-)EnsemblGRCr8
mRatBN7.21473,509,933 - 73,556,192 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,509,933 - 73,556,177 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1477,955,568 - 78,001,446 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,196,416 - 79,242,292 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01475,641,005 - 75,687,147 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,266,931 - 78,312,777 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,266,931 - 78,308,933 (-)Ensemblrn6Rnor6.0
Rnor_5.01478,240,967 - 78,286,807 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41479,076,301 - 79,118,421 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1472,461,187 - 72,503,186 (-)NCBICelera
RGSC_v3.11479,078,691 - 79,120,812 (-)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IEA,ISO)
centrosome  (IEA,ISO)
cytoplasm  (IEA)
cytoskeleton  (IEA)
cytosol  (IBA,IEA,ISO)
dendrite  (IEA,ISO)
growth cone  (IEA,ISO)
midbody  (IEA,ISO)
neuronal cell body  (IEA,ISO)
perikaryon  (IEA)
postsynapse  (IEA,ISO)
presynapse  (IEA,ISO)
spindle  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Knockdown of m-calpain increases survival of primary hippocampal neurons following NMDA excitotoxicity. Bevers MB, etal., J Neurochem. 2009 Mar;108(5):1237-50. doi: 10.1111/j.1471-4159.2008.05860.x. Epub 2009 Jan 22.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Amino- and carboxyl-terminal domains of Filamin-A interact with CRMP1 to mediate Sema3A signalling. Nakamura F, etal., Nat Commun. 2014 Oct 31;5:5325. doi: 10.1038/ncomms6325.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10. A family of rat CRMP genes is differentially expressed in the nervous system. Wang LH and Strittmatter SM, J Neurosci 1996 Oct 1;16(19):6197-207.
Additional References at PubMed
PMID:10956643   PMID:15834957   PMID:17118363   PMID:19799413   PMID:20489728   PMID:21700703   PMID:22871113   PMID:24722188   PMID:25416956   PMID:28131823   PMID:29476059   PMID:31686426  
PMID:32357304   PMID:32880477   PMID:33771901   PMID:38105470   PMID:38142589  


Genomics

Comparative Map Data
Crmp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81477,734,675 - 77,780,916 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1477,734,675 - 77,780,916 (-)EnsemblGRCr8
mRatBN7.21473,509,933 - 73,556,192 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1473,509,933 - 73,556,177 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1477,955,568 - 78,001,446 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01479,196,416 - 79,242,292 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01475,641,005 - 75,687,147 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01478,266,931 - 78,312,777 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,266,931 - 78,308,933 (-)Ensemblrn6Rnor6.0
Rnor_5.01478,240,967 - 78,286,807 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41479,076,301 - 79,118,421 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1472,461,187 - 72,503,186 (-)NCBICelera
RGSC_v3.11479,078,691 - 79,120,812 (-)NCBI
Cytogenetic Map14q21NCBI
CRMP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3845,820,764 - 5,893,086 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl45,748,084 - 5,893,086 (-)Ensemblhg38GRCh38
GRCh3745,822,491 - 5,894,813 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3645,873,392 - 5,945,686 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3445,940,582 - 6,008,280NCBI
Celera45,720,438 - 5,793,799 (-)NCBICelera
Cytogenetic Map4p16.2NCBI
HuRef45,758,400 - 5,829,702 (-)NCBIHuRef
CHM1_145,820,444 - 5,892,754 (-)NCBICHM1_1
T2T-CHM13v2.045,792,373 - 5,864,846 (-)NCBIT2T-CHM13v2.0
Crmp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,399,402 - 37,449,507 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl537,399,284 - 37,449,477 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38537,242,058 - 37,292,163 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl537,241,940 - 37,292,133 (+)Ensemblmm10GRCm38
MGSCv37537,633,319 - 37,683,372 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36537,534,041 - 37,580,382 (+)NCBIMGSCv36mm8
Celera534,689,445 - 34,741,856 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map519.96NCBI
Crmp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555144,212,872 - 4,274,054 (+)Ensembl
ChiLan1.0NW_0049555144,216,575 - 4,273,947 (+)NCBIChiLan1.0ChiLan1.0
CRMP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v236,090,581 - 6,162,136 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan146,019,127 - 6,090,701 (-)NCBINHGRI_mPanPan1
PanPan1.145,900,971 - 5,946,767 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl45,900,971 - 5,969,910 (-)EnsemblpanPan2panpan1.1
CRMP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1371,009,382 - 71,077,814 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl371,010,299 - 71,082,216 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha373,560,063 - 73,632,909 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0371,770,327 - 71,843,339 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl371,770,330 - 71,843,338 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1371,040,716 - 71,113,651 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0371,201,898 - 71,274,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0371,579,399 - 71,652,234 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Crmp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,295,522 - 64,353,713 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647717,996,462 - 18,055,405 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647717,997,213 - 18,035,266 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CRMP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,734,200 - 4,805,644 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.184,734,175 - 4,805,647 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.282,412,175 - 2,478,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CRMP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12741,953,422 - 42,024,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2741,954,417 - 42,019,751 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604788,748,217 - 88,819,471 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Crmp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475522,484,731 - 22,540,976 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475522,484,725 - 22,541,032 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Crmp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11167,866,422 - 67,911,892 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Crmp1
142 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:280
Count of miRNA genes:182
Interacting mature miRNAs:209
Transcripts:ENSRNOT00000065334
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
D14Mgh2  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81477,738,022 - 77,738,156 (+)Marker Load Pipeline
mRatBN7.21473,513,280 - 73,513,414 (+)MAPPERmRatBN7.2
Rnor_6.01478,270,281 - 78,270,414NCBIRnor6.0
Rnor_5.01478,244,317 - 78,244,450UniSTSRnor5.0
RGSC_v3.41479,079,650 - 79,079,783UniSTSRGSC3.4
RGSC_v3.41479,079,649 - 79,079,783RGDRGSC3.4
Celera1472,464,537 - 72,464,670UniSTS
RGSC_v3.11479,082,040 - 79,082,174RGD
Cytogenetic Map14q21UniSTS
RH129959  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21473,510,057 - 73,510,251 (+)MAPPERmRatBN7.2
Rnor_6.01478,267,058 - 78,267,251NCBIRnor6.0
Rnor_5.01478,241,094 - 78,241,287UniSTSRnor5.0
RGSC_v3.41479,076,427 - 79,076,620UniSTSRGSC3.4
Celera1472,461,314 - 72,461,507UniSTS
Cytogenetic Map14q21UniSTS
RH125184  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21473,509,974 - 73,510,134 (+)MAPPERmRatBN7.2
Rnor_6.01478,266,975 - 78,267,134NCBIRnor6.0
Rnor_5.01478,241,011 - 78,241,170UniSTSRnor5.0
RGSC_v3.41479,076,344 - 79,076,503UniSTSRGSC3.4
Celera1472,461,231 - 72,461,390UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 158 91 90 59 92 59 6 349 189 9 139 77 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000065334   ⟹   ENSRNOP00000063671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,734,675 - 77,777,080 (-)Ensembl
mRatBN7.2 Ensembl1473,509,933 - 73,552,341 (-)Ensembl
Rnor_6.0 Ensembl1478,266,931 - 78,308,933 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106933   ⟹   ENSRNOP00000086765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,734,675 - 77,780,916 (-)Ensembl
mRatBN7.2 Ensembl1473,509,933 - 73,556,177 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108366   ⟹   ENSRNOP00000094585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,734,675 - 77,757,675 (-)Ensembl
mRatBN7.2 Ensembl1473,509,933 - 73,532,936 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119459   ⟹   ENSRNOP00000094296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1477,734,675 - 77,764,610 (-)Ensembl
mRatBN7.2 Ensembl1473,509,933 - 73,552,423 (-)Ensembl
RefSeq Acc Id: NM_001365151   ⟹   NP_001352080
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,734,675 - 77,780,916 (-)NCBI
mRatBN7.21473,509,933 - 73,556,177 (-)NCBI
RefSeq Acc Id: NM_012932   ⟹   NP_037064
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81477,734,675 - 77,777,080 (-)NCBI
mRatBN7.21473,509,933 - 73,552,341 (-)NCBI
Rnor_6.01478,266,931 - 78,308,933 (-)NCBI
Rnor_5.01478,240,967 - 78,286,807 (-)NCBI
RGSC_v3.41479,076,301 - 79,118,421 (-)RGD
Celera1472,461,187 - 72,503,186 (-)NCBI
Sequence:
RefSeq Acc Id: NP_037064   ⟸   NM_012932
- Peptide Label: isoform 2
- UniProtKB: P70546 (UniProtKB/Swiss-Prot),   Q62950 (UniProtKB/Swiss-Prot),   A0A8I6ANJ3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063671   ⟸   ENSRNOT00000065334
RefSeq Acc Id: NP_001352080   ⟸   NM_001365151
- Peptide Label: isoform 1
- UniProtKB: A0A8I6A2Y7 (UniProtKB/TrEMBL),   A0A8I6ALU3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000086765   ⟸   ENSRNOT00000106933
Ensembl Acc Id: ENSRNOP00000094585   ⟸   ENSRNOT00000108366
Ensembl Acc Id: ENSRNOP00000094296   ⟸   ENSRNOT00000119459
Protein Domains
Amidohydrolase-related

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62950-F1-model_v2 AlphaFold Q62950 1-572 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2407 AgrOrtholog
BioCyc Gene G2FUF-15355 BioCyc
BioCyc Pathway PWY-3982 [uracil degradation I (reductive)] BioCyc
  PWY-6430 [thymine degradation] BioCyc
BioCyc Pathway Image PWY-3982 BioCyc
  PWY-6430 BioCyc
Ensembl Genes ENSRNOG00000004781 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000065334 ENTREZGENE
  ENSRNOT00000065334.3 UniProtKB/Swiss-Prot
  ENSRNOT00000106933 ENTREZGENE
Gene3D-CATH 2.30.40.10 UniProtKB/Swiss-Prot
  Metal-dependent hydrolases UniProtKB/Swiss-Prot
InterPro Amidohydro-rel UniProtKB/Swiss-Prot
  Hydantoinase/dihydroPyrase UniProtKB/Swiss-Prot
  Metal-dep_hydrolase_composite UniProtKB/Swiss-Prot
  Metal_Hydrolase UniProtKB/Swiss-Prot
  Metallo-dep_Hydrolases_sf UniProtKB/Swiss-Prot
KEGG Report rno:25415 UniProtKB/Swiss-Prot
NCBI Gene 25415 ENTREZGENE
PANTHER HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER UniProtKB/Swiss-Prot
  PTHR11647:SF54 UniProtKB/Swiss-Prot
Pfam Amidohydro_1 UniProtKB/Swiss-Prot
PhenoGen Crmp1 PhenoGen
RatGTEx ENSRNOG00000004781 RatGTEx
Superfamily-SCOP SSF51338 UniProtKB/Swiss-Prot
  SSF51556 UniProtKB/Swiss-Prot
TIGR TC217738
UniProt A0A8I6A2Y7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALU3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ANJ3 ENTREZGENE, UniProtKB/TrEMBL
  A6IJW5_RAT UniProtKB/TrEMBL
  DPYL1_RAT UniProtKB/Swiss-Prot
  P70546 ENTREZGENE
  Q62950 ENTREZGENE
UniProt Secondary P70546 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Crmp1  Collapsin response mediator protein 1      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed mainly in developing nervous system 1298809
gene_process may play a role in neuronal plasticity by transducing signals from semaphorins 1298809