Chrnd (cholinergic receptor nicotinic delta subunit)

Gene: Chrnd (cholinergic receptor nicotinic delta subunit) Rattus norvegicus

Analyze

Symbol:

Chrnd

Name:

cholinergic receptor nicotinic delta subunit

RGD ID:

2352

Description:

Enables acetylcholine-gated monoatomic cation-selective channel activity. Involved in monoatomic cation transport and skeletal muscle contraction. Part of acetylcholine-gated channel complex. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 3A; congenital myasthenic syndrome 3B; and congenital myasthenic syndrome 3C. Orthologous to human CHRND (cholinergic receptor nicotinic delta subunit); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; INTERACTS WITH 3H-1,2-dithiole-3-thione; acetylcholine; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

acetylcholine receptor subunit delta; cholinergic receptor, nicotinic delta; cholinergic receptor, nicotinic, delta; cholinergic receptor, nicotinic, delta (muscle); cholinergic receptor, nicotinic, delta polypeptide; nicotinic acetylcholine receptor delta-subunit

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	95,310,316 - 95,318,734 (+)	NCBI		GRCr8
mRatBN7.2	9	87,862,417 - 87,870,833 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	87,862,407 - 87,870,833 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	96,286,713 - 96,295,119 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	101,422,491 - 101,430,928 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	99,790,669 - 99,799,093 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	94,286,550 - 94,294,968 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	94,286,550 - 94,294,968 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	94,010,107 - 94,018,572 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	85,996,421 - 86,004,839 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	86,179,839 - 86,188,258 (+)	NCBI
Celera	9	85,275,482 - 85,284,297 (+)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital myasthenic syndrome (ISO)

congenital myasthenic syndrome 3A (ISO)

congenital myasthenic syndrome 3B (ISO)

congenital myasthenic syndrome 3C (ISO)

Congenital Myasthenic Syndrome, Fast-Channel (ISO)

Congenital Myasthenic Syndrome, with Facial Dysmorphism, associated with Acetylcholine Receptor Deficiency (ISO)

contractures, pterygia, and spondylocarpotarsal fusion syndrome 1B (ISO)

fetal akinesia deformation sequence syndrome 1 (ISO)

genetic disease (ISO)

Joubert syndrome 22 (ISO)

Multiple Pterygium Syndrome, Lethal Type (ISO)

Muscle Weakness (ISO)

Paralysis (ISO)

Perlman syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

acetylcholine (EXP,ISO)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

chlorpyrifos (EXP)

cobalt atom (EXP)

cobalt dichloride (EXP)

cyclosporin A (ISO)

dexamethasone (EXP)

diazinon (EXP,ISO)

epibatidine (EXP)

flavonoids (EXP)

iron atom (EXP)

iron(0) (EXP)

Licochalcone B (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-ethyl-N-nitrosourea (EXP)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (EXP)

nickel dichloride (EXP)

paracetamol (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sulfoxaflor (EXP)

testosterone (EXP)

tris(2-butoxyethyl) phosphate (ISO)

tungsten (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acetylcholine receptor signaling pathway (IBA)

excitatory postsynaptic potential (IEA)

membrane depolarization (IBA)

monoatomic cation transport (IDA)

monoatomic ion transmembrane transport (IEA)

musculoskeletal movement (ISO)

regulation of membrane potential (ISO)

skeletal muscle contraction (IDA)

skeletal muscle tissue growth (ISO)

synaptic transmission, cholinergic (IEA)

Cellular Component

acetylcholine-gated channel complex (IBA,IDA,ISO)

neuromuscular junction (ISO)

neuron projection (IBA)

plasma membrane (IBA,ISO)

postsynaptic specialization membrane (ISO)

synapse (IBA)

Molecular Function

acetylcholine binding (ISO)

acetylcholine receptor activity (IBA)

acetylcholine-gated monoatomic cation-selective channel activity (IBA,IDA,ISO)

ligand-gated monoatomic ion channel activity (IDA)

protein binding (ISO)

transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

acetylcholine signaling pathway via nicotinic acetylcholine receptor (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Multiple inhibitory actions of lidocaine on Torpedo nicotinic acetylcholine receptors transplanted to Xenopus oocytes.	Alberola-Die A, etal., J Neurochem. 2011 Jun;117(6):1009-19. doi: 10.1111/j.1471-4159.2011.07271.x. Epub 2011 May 10.
2.	Mammalian nicotinic acetylcholine receptors: from structure to function.	Albuquerque EX, etal., Physiol Rev. 2009 Jan;89(1):73-120. doi: 10.1152/physrev.00015.2008.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	Online Mendelian Inheritance in Man, OMIM (TM).	Online Mendelian Inheritance in Man, OMIM (TM).
9.	A novel mode-of-action mediated by the fetal muscle nicotinic acetylcholine receptor resulting in developmental toxicity in rats.	Rasoulpour RJ, etal., Toxicol Sci. 2012 Jun;127(2):522-34. doi: 10.1093/toxsci/kfs118. Epub 2012 Mar 29.
10.	GOA pipeline	RGD automated data pipeline
11.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
14.	Refined structure of the nicotinic acetylcholine receptor at 4A resolution.	Unwin N, J Mol Biol. 2005 Mar 4;346(4):967-89. doi: 10.1016/j.jmb.2004.12.031. Epub 2005 Jan 25.
15.	Primary structure and functional expression of the alpha-, beta-, gamma-, delta- and epsilon-subunits of the acetylcholine receptor from rat muscle.	Witzemann V, etal., Eur J Biochem 1990 Dec 12;194(2):437-48.
16.	The neuromuscular junction: selective remodeling of synaptic regulators at the nerve/muscle interface.	Witzemann V, etal., Mech Dev. 2013 Jun-Aug;130(6-8):402-11. doi: 10.1016/j.mod.2012.09.004. Epub 2012 Sep 29.

Additional References at PubMed

PMID:1638981	PMID:2383398	PMID:4781450	PMID:8798466	PMID:8910344	PMID:10201407	PMID:11435464	PMID:12388596	PMID:18252226

Genomics

Comparative Map Data

Chrnd
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	95,310,316 - 95,318,734 (+)	NCBI		GRCr8
mRatBN7.2	9	87,862,417 - 87,870,833 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	87,862,407 - 87,870,833 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	96,286,713 - 96,295,119 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	101,422,491 - 101,430,928 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	99,790,669 - 99,799,093 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	94,286,550 - 94,294,968 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	94,286,550 - 94,294,968 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	94,010,107 - 94,018,572 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	85,996,421 - 86,004,839 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	86,179,839 - 86,188,258 (+)	NCBI
Celera	9	85,275,482 - 85,284,297 (+)	NCBI		Celera
Cytogenetic Map	9	q35	NCBI

CHRND
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	232,526,160 - 232,536,664 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	232,525,993 - 232,536,667 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	233,390,870 - 233,401,374 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	233,099,166 - 233,108,449 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	233,216,426 - 233,225,710	NCBI
Celera	2	227,155,237 - 227,164,520 (+)	NCBI		Celera
Cytogenetic Map	2	q37.1	NCBI
HuRef	2	225,241,762 - 225,252,266 (+)	NCBI		HuRef
CHM1_1	2	233,396,959 - 233,407,466 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	233,012,979 - 233,023,446 (+)	NCBI		T2T-CHM13v2.0

Chrnd
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	87,118,319 - 87,127,792 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	87,118,329 - 87,127,792 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	87,190,597 - 87,200,070 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	87,190,607 - 87,200,070 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	89,087,227 - 89,096,645 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	89,021,808 - 89,030,277 (+)	NCBI		MGSCv36	mm8
Celera	1	90,163,639 - 90,173,135 (+)	NCBI		Celera
Cytogenetic Map	1	C5	NCBI
cM Map	1	44.07	NCBI

Chrnd
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	3,433,341 - 3,440,269 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955453	3,433,915 - 3,440,534 (-)	NCBI	ChiLan1.0	ChiLan1.0

CHRND
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	135,131,676 - 135,142,119 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	135,146,641 - 135,157,084 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	119,757,722 - 119,768,254 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	238,676,495 - 238,686,987 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	238,676,495 - 238,686,987 (+)	Ensembl	panpan1.1		panPan2

CHRND
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	44,166,089 - 44,175,047 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	44,165,819 - 44,174,216 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	44,660,579 - 44,668,126 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	44,423,511 - 44,430,928 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	44,423,053 - 44,431,615 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	44,349,791 - 44,356,777 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	44,194,650 - 44,202,069 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	44,349,780 - 44,357,201 (+)	NCBI		UU_Cfam_GSD_1.0

Chrnd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	186,371,088 - 186,379,436 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	4,561,507 - 4,568,409 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	4,560,293 - 4,568,431 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHRND
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	133,040,340 - 133,048,829 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	133,040,310 - 133,047,839 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	146,939,779 - 146,947,258 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHRND
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	118,546,408 - 118,556,343 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	118,546,464 - 118,554,993 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	80,945,213 - 80,955,904 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chrnd
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624843	5,287,169 - 5,293,593 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624843	5,287,362 - 5,293,507 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Chrnd
69 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	114
Interacting mature miRNAs:	119
Transcripts:	ENSRNOT00000026504
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	25268044	114175309	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	25661188	100929786	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	36962359	92058970	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	36962359	95410867	Rat
10058949	Gmadr5	Adrenal mass QTL 5	2	0.014	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	9	42791513	87976209	Rat
11353951	Bp394	Blood pressure QTL 394			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	44649921	89649921	Rat
12879506	Pur33	Proteinuria QTL 33			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	44649921	89649921	Rat
11353957	Bmd92	Bone mineral density QTL 92		0.01	tibia mineral mass (VT:1000283)	volumetric bone mineral density (CMO:0001553)	9	46114199	91114199	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	48598251	93598251	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	56771635	101771635	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	58163035	100929646	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	61381434	104821652	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	62072275	96470995	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	62072275	96470995	Rat
61385	Edpm9	Estrogen-dependent pituitary mass QTL 9	3.43	0.05	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	63869687	108869687	Rat
731171	Glom6	Glomerulus QTL 6	2.8	0.0003	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	9	64573531	109573531	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	75712843	111552878	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	77813894	101597663	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	77813894	111552878	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	79271511	91616855	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	9	79271511	91616855	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	79271511	91616855	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	79271511	102910209	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	86369631	92058970	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium							2	2					2
Low		14	2	2		2	6	9		4	18	4	6
Below cutoff	1	17	8	5	4	5			4	10	13	4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_019298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X66531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X74835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000026504 ⟹ ENSRNOP00000026504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	87,862,407 - 87,870,833 (+)	Ensembl
Rnor_6.0 Ensembl	9	94,286,550 - 94,294,968 (+)	Ensembl

RefSeq Acc Id:

NM_019298 ⟹ NP_062171

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	95,310,316 - 95,318,734 (+)	NCBI
mRatBN7.2	9	87,862,417 - 87,870,833 (+)	NCBI
Rnor_6.0	9	94,286,550 - 94,294,968 (+)	NCBI
Rnor_5.0	9	94,010,107 - 94,018,572 (+)	NCBI
RGSC_v3.4	9	85,996,421 - 86,004,839 (+)	RGD
Celera	9	85,275,482 - 85,284,297 (+)	RGD

Sequence:

show sequence

ATGGCAGGGCCTGTGCCCACACTGGGGCTGCTGGCTGCCCTTGTTGTGTGTGGCAGCTGGGGCC
TGAATGAGGAACAAAGGCTGATCCAGCACCTGTTTGAGGAAAAAGGCTACAACAAAGAACTTCG
GCCGGTGGCTCGAAAGGAGGACATAGTGGATGTCGCCTTAAGTCTGACCCTCTCCAACCTCATC
TCCCTGAAAGAAGTGGAGGAGACCCTCACCACCAATGTGTGGATAGATCATGCATGGATAGACA
GCCGGCTACAATGGAATGCCAACGAGTTTGGGAACATCACCGTCCTGCGCCTGCCCTCTGACAT
GGTGTGGCTACCAGAAATTGTACTGGAGAACAACAATGACGGCTCATTCCAGATTTCTTACGCC
TGCAATGTGCTTGTTTCTGACTCGGGCCATGTGACCTGGCTGCCACCCGCCATCTTCCGCTCCT
CCTGCCCCATCTCGGTCACCTACTTCCCTTTCGATTGGCAGAACTGCTCCCTCAAATTCAGTTC
ACTCAAGTATACCGCCAAGGAGATCAGACTTAGCCTGAAGCAGGAGGAGGAAGACAACCGCAGT
TACCCCATTGAGTGGATCATCATTGACCCTGAGGGTTTCACAGAGAACGGTGAGTGGGAAATAG
TTCACCGGGCAGCCAAGGTCAACGTGGACCCCAGTGTCCCAATGGACAGCACCAACCACCAAGA
CGTCACCTTCTACCTCATCATCCGCCGCAAGCCGCTCTTCTACATCATCAACATCCTGGTACCC
TGTGTGCTCATCTCCTTCATGATCAACCTGGTCTTCTACCTGCCAGGCGACTGTGGAGAGAAGA
CCTCGGTGGCCATCTCAGTGCTCCTGGCCCAATCTGTCTTCCTGTTGCTTATCTCCAAGAGGCT
GCCGGCCACATCCATGGCCATTCCTTTGGTAGGCAAGTTCCTGCTTTTTGGCATGGTGCTGGTC
ACCATGGTTGTGGTGATCTGCGTCATCGTGCTCAACATCCACTTCCGAACACCCAGCACGCATG
TTCTGTCTGAGGGAGTCAAGAAGTTCTTCCTGGAGACCCTGCCCAAACTCCTGCACATGTCCCG
CCCAGAAGAGGAAGACCCGGGCCCCAGGGCTCTCATCCGGAGGACCAGCTCTCTGGGATACATC
TCCAAGGCAGAGGAGTACTTCTCACTTAAGTCCCGCAGTGACCTCATGTTTGAGAAGCAATCAG
AGCGGCATGGGCTGGCCCGGCGCCTCACCACAGCCCGCAAGCCACCAGCAAGCTCTGAGCAGGT
CCAACAGGAGCTTTTCAATGAGATGAAGCCAGCCGTGGATGGGGCGAACTTCATCGTCAACCAC
ATGAGGGACCAGAACAGTTACAATGAGGAGAAGGACAACTGGAACCAGGTGGCCCGCACAGTGG
ACCGTCTCTGCTTGTTTGTGGTGACGCCCGTCATGGTGGTGGGCACAGCCTGGATCTTCCTGCA
GGGTGTCTACAACCAGCCCCCACCCCAGCCTTTCCCTGGGGACCCCTTCTCCTATGATGAACAG
GACAGGCGCTTCATTTAGAGCAGGCATGAGTAAAACAGTCAGGCAGACGGCGGTCTGAGAATTG
TCCTTGAGCTTGTGCCTATCTGGGGCTGTGTGGCTGGGCAGAGGTCATGGGAGGAAGAGCTCCC
TCCCAGGAGCAATTCCTTTCTAAATAAAGGAG

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Protein Sequences


Protein RefSeqs	NP_062171	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAA47142	(Get FASTA)	NCBI Sequence Viewer
	CAA52829	(Get FASTA)	NCBI Sequence Viewer
	EDL75618	(Get FASTA)	NCBI Sequence Viewer
	EDL75619	(Get FASTA)	NCBI Sequence Viewer
	EDL75620	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026504
	ENSRNOP00000026504.5
	ENSRNOP00055010218
	ENSRNOP00060013303
	ENSRNOP00065027413
GenBank Protein	P25110	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_062171 ⟸ NM_019298
- Peptide Label:	precursor
- UniProtKB:	P25110 (UniProtKB/Swiss-Prot), A6JWL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGPVPTLGLLAALVVCGSWGLNEEQRLIQHLFEEKGYNKELRPVARKEDIVDVALSLTLSNLI SLKEVEETLTTNVWIDHAWIDSRLQWNANEFGNITVLRLPSDMVWLPEIVLENNNDGSFQISYA CNVLVSDSGHVTWLPPAIFRSSCPISVTYFPFDWQNCSLKFSSLKYTAKEIRLSLKQEEEDNRS YPIEWIIIDPEGFTENGEWEIVHRAAKVNVDPSVPMDSTNHQDVTFYLIIRRKPLFYIINILVP CVLISFMINLVFYLPGDCGEKTSVAISVLLAQSVFLLLISKRLPATSMAIPLVGKFLLFGMVLV TMVVVICVIVLNIHFRTPSTHVLSEGVKKFFLETLPKLLHMSRPEEEDPGPRALIRRTSSLGYI SKAEEYFSLKSRSDLMFEKQSERHGLARRLTTARKPPASSEQVQQELFNEMKPAVDGANFIVNH MRDQNSYNEEKDNWNQVARTVDRLCLFVVTPVMVVGTAWIFLQGVYNQPPPQPFPGDPFSYDEQ DRRFI hide sequence

RefSeq Acc Id:

ENSRNOP00000026504 ⟸ ENSRNOT00000026504

Protein Domains

Neurotransmitter-gated ion-channel ligand-binding Neurotransmitter-gated ion-channel transmembrane

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P25110-F1-model_v2	AlphaFold	P25110	1-517	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2352	AgrOrtholog
BioCyc Gene	G2FUF-26850	BioCyc
Ensembl Genes	ENSRNOG00000019527	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055007667	UniProtKB/Swiss-Prot
	ENSRNOG00060010136	UniProtKB/Swiss-Prot
	ENSRNOG00065020266	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000026504	ENTREZGENE
	ENSRNOT00000026504.7	UniProtKB/Swiss-Prot
	ENSRNOT00055012826	UniProtKB/Swiss-Prot
	ENSRNOT00060017118	UniProtKB/Swiss-Prot
	ENSRNOT00065034236	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.58.390	UniProtKB/Swiss-Prot
	2.70.170.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neurotransmitter-gated ion-channel transmembrane domain	UniProtKB/TrEMBL
InterPro	Neur_chan_lig-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neur_chan_lig-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neur_channel	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neuro-gated_channel_TM_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neuro_actylchol_rec	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neurotrans-gated_channel_TM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neurotransmitter_ion_chnl_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nicotinic_acetylcholine_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:54240	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	54240	ENTREZGENE
PANTHER	ACETYLCHOLINE RECEPTOR SUBUNIT DELTA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NEUROTRANSMITTER GATED ION CHANNEL	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam	Neur_chan_LBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Neur_chan_memb	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Chrnd	PhenoGen
PRINTS	NICOTINICR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NRIONCHANNEL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	NEUROTR_ION_CHANNEL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019527	RatGTEx
	ENSRNOG00055007667	RatGTEx
	ENSRNOG00060010136	RatGTEx
	ENSRNOG00065020266	RatGTEx
Superfamily-SCOP	Neurotransmitter-gated ion-channel transmembrane pore	UniProtKB/TrEMBL
	Nicotinic receptor ligand binding domain-like	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
	SSF90112	UniProtKB/Swiss-Prot
TIGR	TC221601
UniProt	A6JWL0	ENTREZGENE, UniProtKB/TrEMBL
	A6JWL1_RAT	UniProtKB/TrEMBL
	A6JWL2_RAT	UniProtKB/TrEMBL
	ACHD_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Chrnd	cholinergic receptor nicotinic delta subunit	Chrnd	cholinergic receptor, nicotinic delta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-09	Chrnd	cholinergic receptor, nicotinic delta	Chrnd	cholinergic receptor, nicotinic, delta (muscle)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Chrnd	cholinergic receptor, nicotinic, delta (muscle)	Chrnd	cholinergic receptor, nicotinic, delta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-29	Chrnd	cholinergic receptor, nicotinic, delta	Chrnd	cholinergic receptor, nicotinic, delta polypeptide	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Chrnd	cholinergic receptor, nicotinic, delta polypeptide			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in muscle	68734

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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