Cebpg (CCAAT/enhancer binding protein gamma) - Rat Genome Database

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Gene: Cebpg (CCAAT/enhancer binding protein gamma) Rattus norvegicus
Analyze
Symbol: Cebpg
Name: CCAAT/enhancer binding protein gamma
RGD ID: 2330
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity, bending. Involved in liver development and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Orthologous to human CEBPG (CCAAT enhancer binding protein gamma); PARTICIPATES IN tuberculosis pathway; INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C/EBP; c/EBP gamma; CCAAT/enhancer binding protein (C/EBP) gamma; CCAAT/enhancer binding protein (C/EBP), gamma; CCAAT/enhancer binding protein ,gamma; CCAAT/enhancer-binding protein gamma; CEBPRNA; homolog to a human CCAAT/enhancer binding protein - gamma; rat homolog to a human CCAAT/enhancer binding protein - gamma
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,820,981 - 96,829,736 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl196,810,214 - 96,830,283 (-)EnsemblGRCr8
mRatBN7.2187,683,060 - 87,692,772 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,684,019 - 87,694,569 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx193,083,770 - 93,090,520 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,549,756 - 101,556,506 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,842,069 - 94,848,819 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,286,956 - 91,297,459 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,287,917 - 91,296,656 (-)Ensemblrn6Rnor6.0
Rnor_5.0192,417,890 - 92,442,666 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4187,552,695 - 87,559,447 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera182,038,947 - 82,045,699 (-)NCBICelera
RGSC_v3.1187,630,805 - 87,637,558 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2-dimethylhydrazine  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
1H-pyrazole  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-ethoxyethanol  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methoxyethanol  (EXP)
2-methylcholine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
AM-251  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
astemizole  (EXP)
baicalein  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (ISO)
Didecyldimethylammonium  (ISO)
diisononyl phthalate  (ISO)
dimethylarsinic acid  (EXP)
Diosbulbin B  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
fenthion  (ISO)
flavonoids  (EXP,ISO)
fluoranthene  (ISO)
flusilazole  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
hexaconazole  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
inulin  (ISO)
isoprenaline  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
malathion  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N(4)-hydroxycytidine  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
nickel dichloride  (ISO)
ochratoxin A  (EXP)
paracetamol  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP)
piroxicam  (ISO)
progesterone  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)
nucleus  (IEA,ISO,ISS)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Ig/EBP (C/EBP gamma) is a transdominant negative inhibitor of C/EBP family transcriptional activators. Cooper C, etal., Nucleic Acids Res. 1995 Nov 11;23(21):4371-7.
2. Cloning of the cDNA encoding human C/EBP gamma, a protein binding to the PRE-I enhancer element of the human interleukin-4 promoter. Davydov IV, etal., Gene. 1995 Aug 19;161(2):271-5.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. CEBPG transcription factor correlates with antioxidant and DNA repair genes in normal bronchial epithelial cells but not in individuals with bronchogenic carcinoma. Mullins DN, etal., BMC Cancer. 2005 Oct 29;5:141.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Members of the C/EBP transcription factor family stimulate expression of the human and rat surfactant protein A (SP-A) genes. Rosenberg E, etal., Biochim Biophys Acta 2002 May 3;1575(1-3):82-90.
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
12. Molecular cloning of two C/EBP-related proteins that bind to the promoter and the enhancer of the alpha 1-fetoprotein gene. Further analysis of C/EBP beta and C/EBP gamma. Thomassin H, etal., Nucleic Acids Res 1992 Jun 25;20(12):3091-8.
Additional References at PubMed
PMID:1371974   PMID:1431100   PMID:9494081   PMID:10587348   PMID:11060036   PMID:12213809   PMID:12223092   PMID:12477932   PMID:12757710   PMID:15833715   PMID:16735515  


Genomics

Comparative Map Data
Cebpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8196,820,981 - 96,829,736 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl196,810,214 - 96,830,283 (-)EnsemblGRCr8
mRatBN7.2187,683,060 - 87,692,772 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl187,684,019 - 87,694,569 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx193,083,770 - 93,090,520 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01101,549,756 - 101,556,506 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0194,842,069 - 94,848,819 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,286,956 - 91,297,459 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,287,917 - 91,296,656 (-)Ensemblrn6Rnor6.0
Rnor_5.0192,417,890 - 92,442,666 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4187,552,695 - 87,559,447 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera182,038,947 - 82,045,699 (-)NCBICelera
RGSC_v3.1187,630,805 - 87,637,558 (-)NCBI
Cytogenetic Map1q21NCBI
CEBPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381933,373,709 - 33,382,686 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1933,373,685 - 33,382,686 (+)Ensemblhg38GRCh38
GRCh371933,864,615 - 33,873,592 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361938,556,449 - 38,565,432 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341938,556,448 - 38,565,431NCBI
Celera1930,558,181 - 30,567,164 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1930,365,211 - 30,374,228 (+)NCBIHuRef
CHM1_11933,865,529 - 33,874,546 (+)NCBICHM1_1
T2T-CHM13v2.01935,893,494 - 35,902,471 (+)NCBIT2T-CHM13v2.0
Cebpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39734,745,847 - 34,755,991 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl734,745,847 - 34,755,998 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38735,046,422 - 35,056,566 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,046,422 - 35,056,573 (-)Ensemblmm10GRCm38
MGSCv37735,831,441 - 35,841,585 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36734,755,545 - 34,765,263 (-)NCBIMGSCv36mm8
Celera730,182,296 - 30,192,439 (-)NCBICelera
Cytogenetic Map7B2NCBI
cM Map720.91NCBI
Cebpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554683,137,106 - 3,141,733 (+)Ensembl
ChiLan1.0NW_0049554683,137,106 - 3,141,733 (+)NCBIChiLan1.0ChiLan1.0
CEBPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22039,345,539 - 39,354,475 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11941,345,573 - 41,354,513 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01930,295,603 - 30,304,984 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11939,039,837 - 39,049,671 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1939,046,219 - 39,046,671 (+)EnsemblpanPan2panpan1.1
CEBPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11118,777,110 - 118,784,397 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1118,778,224 - 118,778,667 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1118,176,203 - 118,186,035 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01119,373,710 - 119,383,542 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,376,715 - 119,377,158 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11118,934,395 - 118,944,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01118,560,906 - 118,570,734 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,619,593 - 119,629,416 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cebpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093499,201,634 - 9,210,667 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365702,438,187 - 2,438,639 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365702,435,672 - 2,439,056 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEBPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl643,164,919 - 43,174,990 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1643,164,902 - 43,175,002 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,712,133 - 38,722,192 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CEBPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1628,415,448 - 28,424,463 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660736,139,851 - 6,148,871 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cebpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247949,729,876 - 9,736,516 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247949,727,616 - 9,736,729 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cebpg
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12163,623,780 - 163,638,648 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cebpg
66 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1423
Count of miRNA genes:355
Interacting mature miRNAs:508
Transcripts:ENSRNOT00000028703
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat

Markers in Region
RH127434  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,684,222 - 87,684,402 (+)MAPPERmRatBN7.2
Rnor_6.0191,288,118 - 91,288,297NCBIRnor6.0
Rnor_5.0192,419,053 - 92,419,232UniSTSRnor5.0
RGSC_v3.4187,550,898 - 87,551,077UniSTSRGSC3.4
Celera182,037,150 - 82,037,329UniSTS
RH 3.4 Map1861.7UniSTS
Cytogenetic Map1q21UniSTS
RH129375  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,684,082 - 87,684,237 (+)MAPPERmRatBN7.2
Rnor_6.0191,287,978 - 91,288,132NCBIRnor6.0
Rnor_5.0192,418,913 - 92,419,067UniSTSRnor5.0
RGSC_v3.4187,550,758 - 87,550,912UniSTSRGSC3.4
Celera182,037,010 - 82,037,164UniSTS
RH 3.4 Map1862.7UniSTS
Cytogenetic Map1q21UniSTS
RH132653  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,686,596 - 87,686,781 (+)MAPPERmRatBN7.2
Rnor_6.0191,290,492 - 91,290,676NCBIRnor6.0
Rnor_5.0192,421,427 - 92,421,611UniSTSRnor5.0
RGSC_v3.4187,553,272 - 87,553,456UniSTSRGSC3.4
Celera182,039,524 - 82,039,708UniSTS
RH 3.4 Map1862.0UniSTS
Cytogenetic Map1q21UniSTS
RH94774  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,686,019 - 87,686,280 (+)MAPPERmRatBN7.2
Rnor_6.0191,289,915 - 91,290,175NCBIRnor6.0
Rnor_5.0192,420,850 - 92,421,110UniSTSRnor5.0
RGSC_v3.4187,552,695 - 87,552,955UniSTSRGSC3.4
Celera182,038,947 - 82,039,207UniSTS
Cytogenetic Map1q21UniSTS
PMC305797P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2187,686,726 - 87,687,204 (+)MAPPERmRatBN7.2
Rnor_6.0191,290,622 - 91,291,099NCBIRnor6.0
Rnor_5.0192,421,557 - 92,422,034UniSTSRnor5.0
RGSC_v3.4187,553,402 - 87,553,879UniSTSRGSC3.4
Celera182,039,654 - 82,040,131UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000028703   ⟹   ENSRNOP00000028703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl196,820,986 - 96,830,151 (-)Ensembl
mRatBN7.2 Ensembl187,684,019 - 87,694,569 (-)Ensembl
Rnor_6.0 Ensembl191,287,917 - 91,296,656 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147322   ⟹   ENSRNOP00000110924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl196,820,501 - 96,829,562 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150483   ⟹   ENSRNOP00000103378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl196,810,214 - 96,830,283 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000169211   ⟹   ENSRNOP00000108317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl196,822,476 - 96,827,368 (-)Ensembl
RefSeq Acc Id: NM_012831   ⟹   NP_036963
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,822,984 - 96,829,736 (-)NCBI
mRatBN7.2187,686,020 - 87,692,772 (-)NCBI
Rnor_6.0191,289,915 - 91,296,667 (-)NCBI
Rnor_5.0192,417,890 - 92,442,666 (-)NCBI
RGSC_v3.4187,552,695 - 87,559,447 (-)RGD
Celera182,038,947 - 82,045,699 (-)RGD
Sequence:
RefSeq Acc Id: XM_039101538   ⟹   XP_038957466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8196,820,981 - 96,829,544 (-)NCBI
mRatBN7.2187,683,060 - 87,692,579 (-)NCBI
Protein Sequences
Protein RefSeqs NP_036963 (Get FASTA)   NCBI Sequence Viewer  
  XP_038957466 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66589 (Get FASTA)   NCBI Sequence Viewer  
  CAA45745 (Get FASTA)   NCBI Sequence Viewer  
  EDM07634 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000103378
  ENSRNOP00000108317
GenBank Protein P26801 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036963   ⟸   NM_012831
- UniProtKB: P26801 (UniProtKB/Swiss-Prot),   B2GVA2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000028703   ⟸   ENSRNOT00000028703
RefSeq Acc Id: XP_038957466   ⟸   XM_039101538
- Peptide Label: isoform X1
- UniProtKB: P26801 (UniProtKB/Swiss-Prot),   B2GVA2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110924   ⟸   ENSRNOT00000147322
Ensembl Acc Id: ENSRNOP00000108317   ⟸   ENSRNOT00000169211
Ensembl Acc Id: ENSRNOP00000103378   ⟸   ENSRNOT00000150483
Protein Domains
bZIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P26801-F1-model_v2 AlphaFold P26801 1-150 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689964
Promoter ID:EPDNEW_R487
Type:initiation region
Name:Cebpg_1
Description:CCAAT/enhancer binding protein gamma
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0191,296,614 - 91,296,674EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2330 AgrOrtholog
BioCyc Gene G2FUF-59996 BioCyc
Ensembl Genes ENSRNOG00000021144 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000150483 ENTREZGENE
  ENSRNOT00000169211 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7934938 IMAGE-MGC_LOAD
InterPro bZIP UniProtKB/Swiss-Prot
  bZIP_sf UniProtKB/Swiss-Prot
  C/EBP UniProtKB/Swiss-Prot
KEGG Report rno:25301 UniProtKB/Swiss-Prot
MGC_CLONE MGC:188349 IMAGE-MGC_LOAD
NCBI Gene 25301 ENTREZGENE
PANTHER CCAAT/ENHANCER BINDING PROTEIN UniProtKB/Swiss-Prot
  CCAAT/ENHANCER-BINDING PROTEIN GAMMA UniProtKB/Swiss-Prot
Pfam bZIP_2 UniProtKB/Swiss-Prot
PhenoGen Cebpg PhenoGen
PROSITE BZIP UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000021144 RatGTEx
SMART BRLZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57959 UniProtKB/Swiss-Prot
TIGR TC232805
UniProt A0A8L2QFI0_RAT UniProtKB/TrEMBL
  B2GVA2 ENTREZGENE, UniProtKB/TrEMBL
  CEBPG_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-13 Cebpg  CCAAT/enhancer binding protein gamma  Cebpg  CCAAT/enhancer binding protein (C/EBP), gamma  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Cebpg  CCAAT/enhancer binding protein (C/EBP), gamma    CCAAT/enhancer binding protein ,gamma  Name updated 1299863 APPROVED
2002-11-06 Cebpg  CCAAT/enhancer binding protein ,gamma    CCAAT/enhancer binding protein (C/EBP), gamma  Name updated 625702 APPROVED
2001-07-23 Cebpg  CCAAT/enhancer binding protein (C/EBP), gamma      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED
2001-07-23 Cebpg  Rat homolog to a human CCAAT/enhancer binding protein - gamma      Name withdrawn 67952 WITHDRAWN