Eif4ebp3 (eukaryotic translation initiation factor 4E binding protein 3) - Rat Genome Database

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Gene: Eif4ebp3 (eukaryotic translation initiation factor 4E binding protein 3) Rattus norvegicus
Analyze
Symbol: Eif4ebp3 (Ensembl: Ankhd1)
Name: eukaryotic translation initiation factor 4E binding protein 3 (Ensembl:ankyrin repeat and KH domain containing 1)
RGD ID: 2324556
Description: Predicted to enable RNA binding activity. Predicted to be involved in innate immune response. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to several human genes including ANKHD1-EIF4EBP3 (ANKHD1-EIF4EBP3 readthrough) and ANKHD1 (ankyrin repeat and KH domain containing 1); INTERACTS WITH 17beta-estradiol; bisphenol A; chlorohydrocarbon.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: eukaryotic translation initiation factor 4E binding protein 3-like; eukaryotic translation initiation factor 4E-binding protein 3; LOC100365872
RGD Orthologs
Human
Mouse
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,540,324 - 28,542,070 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,540,058 - 28,542,061 (+)EnsemblGRCr8
mRatBN7.21828,263,089 - 28,268,033 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,162,311 - 28,268,024 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,393,432 - 28,395,178 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,155,523 - 29,157,269 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,490,761 - 28,492,507 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,490,981 - 29,492,727 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,386,809 - 29,492,718 (+)Ensemblrn6Rnor6.0
Rnor_5.01829,196,055 - 29,197,801 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1827,993,461 - 27,995,207 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles. Topalidou I, etal., PLoS Genet. 2016 May 18;12(5):e1006074. doi: 10.1371/journal.pgen.1006074. eCollection 2016 May.
Additional References at PubMed
PMID:8889548   PMID:19946888  


Genomics

Comparative Map Data
Eif4ebp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,540,324 - 28,542,070 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,540,058 - 28,542,061 (+)EnsemblGRCr8
mRatBN7.21828,263,089 - 28,268,033 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,162,311 - 28,268,024 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,393,432 - 28,395,178 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,155,523 - 29,157,269 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,490,761 - 28,492,507 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,490,981 - 29,492,727 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,386,809 - 29,492,718 (+)Ensemblrn6Rnor6.0
Rnor_5.01829,196,055 - 29,197,801 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1827,993,461 - 27,995,207 (+)NCBICelera
Cytogenetic Map18p11NCBI
EIF4EBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,547,662 - 140,549,576 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,547,662 - 140,549,576 (+)Ensemblhg38GRCh38
GRCh375139,927,247 - 139,929,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,907,435 - 139,909,347 (+)NCBIBuild 36Build 36hg18NCBI36
Build 345139,907,434 - 139,909,347NCBI
Celera5136,004,002 - 136,005,914 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,072,590 - 135,074,502 (+)NCBIHuRef
CHM1_15139,360,499 - 139,362,411 (+)NCBICHM1_1
T2T-CHM13v2.05141,073,092 - 141,075,006 (+)NCBIT2T-CHM13v2.0
Eif4ebp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,797,113 - 36,799,377 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,797,113 - 36,798,970 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381836,664,060 - 36,666,324 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,664,060 - 36,665,917 (+)Ensemblmm10GRCm38
MGSCv371836,823,714 - 36,825,568 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361836,790,034 - 36,791,888 (+)NCBIMGSCv36mm8
Celera1837,113,150 - 37,115,004 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
EIF4EBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,742,811 - 35,744,749 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,618,282 - 35,744,734 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha232,781,044 - 32,782,982 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0236,193,925 - 36,199,382 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,197,444 - 36,199,367 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,250,315 - 33,252,253 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,117,850 - 34,119,788 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,870,546 - 34,872,484 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Eif4ebp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,093,460 - 152,098,088 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,513,417 - 9,518,037 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,512,252 - 9,518,044 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4EBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,303,859 - 142,305,716 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12142,303,881 - 142,305,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,247,725 - 148,249,563 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Variants

.
Variants in Eif4ebp3
5 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:43
Interacting mature miRNAs:51
Transcripts:ENSRNOT00000032316
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
RH133666  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,267,776 - 28,267,964 (+)MAPPERmRatBN7.2
Rnor_6.01829,492,471 - 29,492,658NCBIRnor6.0
Rnor_5.01829,197,545 - 29,197,732UniSTSRnor5.0
RGSC_v3.41829,305,022 - 29,305,209UniSTSRGSC3.4
Celera1827,994,951 - 27,995,138UniSTS
RH 3.4 Map18393.2UniSTS
Cytogenetic Map18p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 49 65 136 93 11 48 36 32 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024825   ⟹   ENSRNOP00000024825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,162,384 - 28,260,913 (+)Ensembl
Rnor_6.0 Ensembl1829,386,906 - 29,485,607 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000032316   ⟹   ENSRNOP00000033405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,540,058 - 28,542,061 (+)Ensembl
mRatBN7.2 Ensembl1828,266,287 - 28,268,024 (+)Ensembl
Rnor_6.0 Ensembl1829,490,981 - 29,492,718 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000082079   ⟹   ENSRNOP00000074821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,162,311 - 28,268,024 (+)Ensembl
Rnor_6.0 Ensembl1829,386,809 - 29,492,601 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096723   ⟹   ENSRNOP00000089900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,162,384 - 28,260,913 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097192   ⟹   ENSRNOP00000086361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,162,311 - 28,268,024 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109205   ⟹   ENSRNOP00000095587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,162,311 - 28,263,788 (+)Ensembl
RefSeq Acc Id: NM_001202552   ⟹   NP_001189481
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,540,324 - 28,542,070 (+)NCBI
mRatBN7.21828,266,287 - 28,268,033 (+)NCBI
Rnor_6.01829,490,981 - 29,492,727 (+)NCBI
Rnor_5.01829,196,055 - 29,197,801 (+)NCBI
Celera1827,993,461 - 27,995,207 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001189481 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76300 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000033405.3
RefSeq Acc Id: NP_001189481   ⟸   NM_001202552
- UniProtKB: D4AEG8 (UniProtKB/TrEMBL),   A6J318 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074821   ⟸   ENSRNOT00000082079
Ensembl Acc Id: ENSRNOP00000024825   ⟸   ENSRNOT00000024825
Ensembl Acc Id: ENSRNOP00000033405   ⟸   ENSRNOT00000032316
Ensembl Acc Id: ENSRNOP00000086361   ⟸   ENSRNOT00000097192
Ensembl Acc Id: ENSRNOP00000089900   ⟸   ENSRNOT00000096723
Ensembl Acc Id: ENSRNOP00000095587   ⟸   ENSRNOT00000109205

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K916-F1-model_v2 AlphaFold A0A0G2K916 1-2615 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700722
Promoter ID:EPDNEW_R11246
Type:initiation region
Name:Eif4ebp3_2
Description:eukaryotic translation initiation factor 4E binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11245  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01829,490,956 - 29,491,016EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324556 AgrOrtholog
BioCyc Gene G2FUF-7872 BioCyc
Ensembl Genes ENSRNOG00000030247 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032316.6 UniProtKB/TrEMBL
InterPro EIF4EBP UniProtKB/TrEMBL
KEGG Report rno:100365872 UniProtKB/TrEMBL
NCBI Gene 100365872 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN 3 UniProtKB/TrEMBL
Pfam eIF_4EBP UniProtKB/TrEMBL
PhenoGen Eif4ebp3 PhenoGen
RatGTEx ENSRNOG00000030247 RatGTEx
UniProt A6J318 ENTREZGENE, UniProtKB/TrEMBL
  D4AEG8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-02-16 Eif4ebp3   eukaryotic translation initiation factor 4E binding protein 3  LOC100365872  eukaryotic translation initiation factor 4E binding protein 3-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100365872  eukaryotic translation initiation factor 4E binding protein 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL