Bet1 (Bet1 golgi vesicular membrane trafficking protein) - Rat Genome Database

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Gene: Bet1 (Bet1 golgi vesicular membrane trafficking protein) Rattus norvegicus
Analyze
Symbol: Bet1
Name: Bet1 golgi vesicular membrane trafficking protein
RGD ID: 2203
Description: Enables syntaxin binding activity. Involved in vesicle fusion with Golgi apparatus. Acts upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Located in Golgi cis cisterna. Part of SNARE complex. Orthologous to human BET1 (Bet1 golgi vesicular membrane trafficking protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: BET1 homolog; blocked early in transport 1 homolog (S. cerevisiae); blocked early in transport 1 homolog (S.cerevisiae); Golgi vesicular membrane trafficking protein p18; golgi vesicular membrane-trafficking protein p18; MGC72488; rBET1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,070,892 - 33,081,162 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl433,070,891 - 33,081,164 (-)EnsemblGRCr8
mRatBN7.2432,116,232 - 32,126,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,116,235 - 32,126,617 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx437,088,503 - 37,099,809 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,014,624 - 33,025,930 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0431,385,538 - 31,396,616 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,082,368 - 29,092,638 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,082,365 - 29,092,753 (-)Ensemblrn6Rnor6.0
Rnor_5.0428,992,526 - 29,002,852 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4428,941,105 - 28,951,375 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera427,501,409 - 27,511,460 (-)NCBICelera
RGSC_v3.1428,959,601 - 28,970,171 (-)NCBI
Cytogenetic Map4q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzene  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diuron  (ISO)
endosulfan  (EXP)
ethyl methanesulfonate  (ISO)
flavonoids  (EXP)
folic acid  (ISO)
FR900359  (ISO)
inulin  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylmercury(1+)  (EXP)
N,N-diethyl-m-toluamide  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
Nivalenol  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (EXP)
pirinixic acid  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
ursodeoxycholic acid  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Mammalian vesicle trafficking proteins of the endoplasmic reticulum and Golgi apparatus. Hay JC, etal., J Biol Chem 1996 Mar 8;271(10):5671-9.
4. The SNARE motif contributes to rbet1 intracellular targeting and dynamics independently of SNARE interactions. Joglekar AP, etal., J Biol Chem 2003 Apr 18;278(16):14121-33. Epub 2003 Feb 2.
5. Mammalian Bet3 functions as a cytosolic factor participating in transport from the ER to the Golgi apparatus. Loh E, etal., J Cell Sci. 2005 Mar 15;118(Pt 6):1209-22. Epub 2005 Feb 22.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. The identification of a novel endoplasmic reticulum to Golgi SNARE complex used by the prechylomicron transport vesicle. Siddiqi SA, etal., J Biol Chem. 2006 Jul 28;281(30):20974-82. Epub 2006 May 30.
12. Syntaxin 17 is abundant in steroidogenic cells and implicated in smooth endoplasmic reticulum membrane dynamics. Steegmaier M, etal., Mol Biol Cell. 2000 Aug;11(8):2719-31.
13. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
14. Countercurrent distribution of two distinct SNARE complexes mediating transport within the Golgi stack. Volchuk A, etal., Mol Biol Cell. 2004 Apr;15(4):1506-18. doi: 10.1091/mbc.e03-08-0625. Epub 2004 Jan 23.
15. GS15, a 15-kilodalton Golgi soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) homologous to rbet1. Xu Y, etal., J Biol Chem 1997 Aug 8;272(32):20162-6.
Additional References at PubMed
PMID:9094723   PMID:9382863   PMID:12477932   PMID:15489334   PMID:19946888  


Genomics

Comparative Map Data
Bet1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,070,892 - 33,081,162 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl433,070,891 - 33,081,164 (-)EnsemblGRCr8
mRatBN7.2432,116,232 - 32,126,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,116,235 - 32,126,617 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx437,088,503 - 37,099,809 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,014,624 - 33,025,930 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0431,385,538 - 31,396,616 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,082,368 - 29,092,638 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,082,365 - 29,092,753 (-)Ensemblrn6Rnor6.0
Rnor_5.0428,992,526 - 29,002,852 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4428,941,105 - 28,951,375 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera427,501,409 - 27,511,460 (-)NCBICelera
RGSC_v3.1428,959,601 - 28,970,171 (-)NCBI
Cytogenetic Map4q13NCBI
BET1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38793,962,762 - 94,004,355 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl793,962,762 - 94,004,382 (-)Ensemblhg38GRCh38
GRCh37793,592,074 - 93,633,667 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36793,458,936 - 93,471,626 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34793,267,213 - 93,278,341NCBI
Celera788,319,269 - 88,331,959 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,228,528 - 88,241,219 (-)NCBIHuRef
CHM1_1793,551,233 - 93,563,923 (-)NCBICHM1_1
T2T-CHM13v2.0795,198,654 - 95,240,247 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2792,950,170 - 92,962,860 (-)NCBI
Bet1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,076,899 - 4,086,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,076,899 - 4,086,972 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3864,076,899 - 4,086,998 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,076,899 - 4,086,972 (-)Ensemblmm10GRCm38
MGSCv3764,026,904 - 4,036,927 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3664,026,904 - 4,036,927 (-)NCBIMGSCv36mm8
Celera64,223,554 - 4,233,571 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
Bet1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543210,762,903 - 10,774,780 (-)Ensembl
ChiLan1.0NW_00495543210,762,973 - 10,774,744 (-)NCBIChiLan1.0ChiLan1.0
BET1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26111,835,749 - 111,846,933 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,100,388 - 160,111,552 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0785,947,997 - 85,959,151 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1799,508,461 - 99,550,129 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl799,539,001 - 99,550,125 (-)EnsemblpanPan2panpan1.1
BET1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11419,490,556 - 19,499,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1419,491,218 - 19,554,327 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1419,050,097 - 19,059,492 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01419,304,858 - 19,314,241 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,304,862 - 19,368,983 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11419,457,564 - 19,466,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,192,880 - 19,202,265 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01419,450,007 - 19,459,393 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bet1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511832,818,459 - 32,826,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365856,036,472 - 6,043,832 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365856,036,452 - 6,044,827 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BET1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl973,782,168 - 73,792,648 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1973,782,157 - 73,792,653 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2980,823,432 - 80,833,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BET1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12155,014,065 - 55,024,958 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2155,014,079 - 55,024,964 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604249,261,547 - 49,307,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bet1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624813723,892 - 733,730 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624813717,917 - 733,770 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Bet1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16134,439,269 - 134,449,171 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Bet1
32 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:429
Count of miRNA genes:239
Interacting mature miRNAs:286
Transcripts:ENSRNOT00000014810
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4134142783Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4134142783Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42228845340471598Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)4135396961Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)4135396961Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4133538816Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42228845345429897Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000014810   ⟹   ENSRNOP00000014810
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl433,070,891 - 33,081,164 (-)Ensembl
mRatBN7.2 Ensembl432,116,235 - 32,126,617 (-)Ensembl
Rnor_6.0 Ensembl429,082,365 - 29,092,753 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106013   ⟹   ENSRNOP00000090632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl433,070,891 - 33,077,016 (-)Ensembl
mRatBN7.2 Ensembl432,116,235 - 32,122,356 (-)Ensembl
RefSeq Acc Id: NM_019251   ⟹   NP_062124
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8433,070,892 - 33,081,162 (-)NCBI
mRatBN7.2432,116,232 - 32,126,502 (-)NCBI
Rnor_6.0429,082,368 - 29,092,638 (-)NCBI
Rnor_5.0428,992,526 - 29,002,852 (-)NCBI
RGSC_v3.4428,941,105 - 28,951,375 (-)RGD
Celera427,501,409 - 27,511,460 (-)RGD
Sequence:
RefSeq Acc Id: NP_062124   ⟸   NM_019251
- UniProtKB: Q62896 (UniProtKB/Swiss-Prot),   A6K2B6 (UniProtKB/TrEMBL),   A0A8I6ANQ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014810   ⟸   ENSRNOT00000014810
Ensembl Acc Id: ENSRNOP00000090632   ⟸   ENSRNOT00000106013
Protein Domains
t-SNARE coiled-coil homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62896-F1-model_v2 AlphaFold Q62896 1-118 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692856
Promoter ID:EPDNEW_R3380
Type:initiation region
Name:Bet1_1
Description:Bet1 golgi vesicular membrane trafficking protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0429,092,685 - 29,092,745EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2203 AgrOrtholog
BioCyc Gene G2FUF-45725 BioCyc
Ensembl Genes ENSRNOG00000011008 Ensembl
Gene3D-CATH 1.20.5.110 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5621977 IMAGE-MGC_LOAD
InterPro BET1_SNARE UniProtKB/Swiss-Prot
  T_SNARE_dom UniProtKB/Swiss-Prot
KEGG Report rno:29631 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72488 IMAGE-MGC_LOAD
NCBI Gene 29631 ENTREZGENE
PANTHER PTHR12791 UniProtKB/Swiss-Prot
PhenoGen Bet1 PhenoGen
PROSITE T_SNARE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011008 RatGTEx
SMART t_SNARE UniProtKB/Swiss-Prot
Superfamily-SCOP SNARE fusion complex UniProtKB/Swiss-Prot
TIGR TC207385
  TC211218
UniProt A0A8I6ANQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UIR4_RAT UniProtKB/TrEMBL
  A6K2B6 ENTREZGENE, UniProtKB/TrEMBL
  A6K2B7_RAT UniProtKB/TrEMBL
  A6K2B8_RAT UniProtKB/TrEMBL
  BET1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-20 Bet1  Bet1 golgi vesicular membrane trafficking protein  Bet1  blocked early in transport 1 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Bet1  blocked early in transport 1 homolog (S. cerevisiae)       Symbol and Name status set to approved 70586 APPROVED
2001-10-23 Bet1  blocked early in transport 1 homolog (S.cerevisiae)      Name updated to reflect Human and Mouse nomenclature 68913 APPROVED

RGD Curation Notes
Note Type Note Reference